data_4CYC # _entry.id 4CYC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4CYC PDBE EBI-60299 WWPDB D_1290060299 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4CYC _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2014-04-10 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Foos, N.' 1 'Mate, M.J.' 2 'Ortiz-Lombardia, M.' 3 # _citation.id primary _citation.title 'A Flexible Extension of the Drosophila Ultrabithorax Homeodomain Defines a Novel Hox/Pbc Interaction Mode.' _citation.journal_abbrev Structure _citation.journal_volume 23 _citation.page_first 270 _citation.page_last ? _citation.year 2015 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25651060 _citation.pdbx_database_id_DOI 10.1016/J.STR.2014.12.011 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Foos, N.' 1 primary 'Maurel-Zaffran, C.' 2 primary 'Mate, M.J.' 3 primary 'Vincentelli, R.' 4 primary 'Hainaut, M.' 5 primary 'Berenger, H.' 6 primary 'Pradel, J.' 7 primary 'Saurin, A.J.' 8 primary 'Ortiz-Lombardia, M.' 9 primary 'Graba, Y.' 10 # _cell.entry_id 4CYC _cell.length_a 97.707 _cell.length_b 97.707 _cell.length_c 73.735 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CYC _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'HOMEOTIC PROTEIN ULTRABITHORAX' 11459.246 1 ? ? 'HOMEODOMAIN WITH HX AND UBDA, RESIDUES 233-367' ? 2 polymer man 'HOMEOBOX PROTEIN EXTRADENTICLE' 8857.946 1 ? ? 'HOMEODOMAIN RESIDUES 238-312' ? 3 polymer syn "5'-D(*GP*TP*CP*GP*CP*CP*AP*TP*AP*AP*AP*TP*CP*AP*CP)-3'" 4537.975 1 ? ? ? ? 4 polymer syn "5'-D(*AP*CP*GP*TP*GP*AP*TP*TP*TP*AP*TP*GP*GP*CP*GP)-3'" 4640.020 1 ? ? ? ? 5 water nat water 18.015 68 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name 'DPBX, HOMEOTIC PROTEIN EXTRADENTICLE' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MQASNHTFYPWMAIAGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI QAIKELNEQEKQA ; ;MQASNHTFYPWMAIAGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI QAIKELNEQEKQA ; A ? 2 'polypeptide(L)' no no GARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCGITVSQVSNWFGNKRIRYKKNIGKAQEEANLYAA GARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCGITVSQVSNWFGNKRIRYKKNIGKAQEEANLYAA B ? 3 polydeoxyribonucleotide no no '(DG)(DT)(DC)(DG)(DC)(DC)(DA)(DT)(DA)(DA)(DA)(DT)(DC)(DA)(DC)' GTCGCCATAAATCAC C ? 4 polydeoxyribonucleotide no no '(DA)(DC)(DG)(DT)(DG)(DA)(DT)(DT)(DT)(DA)(DT)(DG)(DG)(DC)(DG)' ACGTGATTTATGGCG D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLN n 1 3 ALA n 1 4 SER n 1 5 ASN n 1 6 HIS n 1 7 THR n 1 8 PHE n 1 9 TYR n 1 10 PRO n 1 11 TRP n 1 12 MET n 1 13 ALA n 1 14 ILE n 1 15 ALA n 1 16 GLY n 1 17 THR n 1 18 ASN n 1 19 GLY n 1 20 LEU n 1 21 ARG n 1 22 ARG n 1 23 ARG n 1 24 GLY n 1 25 ARG n 1 26 GLN n 1 27 THR n 1 28 TYR n 1 29 THR n 1 30 ARG n 1 31 TYR n 1 32 GLN n 1 33 THR n 1 34 LEU n 1 35 GLU n 1 36 LEU n 1 37 GLU n 1 38 LYS n 1 39 GLU n 1 40 PHE n 1 41 HIS n 1 42 THR n 1 43 ASN n 1 44 HIS n 1 45 TYR n 1 46 LEU n 1 47 THR n 1 48 ARG n 1 49 ARG n 1 50 ARG n 1 51 ARG n 1 52 ILE n 1 53 GLU n 1 54 MET n 1 55 ALA n 1 56 HIS n 1 57 ALA n 1 58 LEU n 1 59 CYS n 1 60 LEU n 1 61 THR n 1 62 GLU n 1 63 ARG n 1 64 GLN n 1 65 ILE n 1 66 LYS n 1 67 ILE n 1 68 TRP n 1 69 PHE n 1 70 GLN n 1 71 ASN n 1 72 ARG n 1 73 ARG n 1 74 MET n 1 75 LYS n 1 76 LEU n 1 77 LYS n 1 78 LYS n 1 79 GLU n 1 80 ILE n 1 81 GLN n 1 82 ALA n 1 83 ILE n 1 84 LYS n 1 85 GLU n 1 86 LEU n 1 87 ASN n 1 88 GLU n 1 89 GLN n 1 90 GLU n 1 91 LYS n 1 92 GLN n 1 93 ALA n 2 1 GLY n 2 2 ALA n 2 3 ARG n 2 4 ARG n 2 5 LYS n 2 6 ARG n 2 7 ARG n 2 8 ASN n 2 9 PHE n 2 10 SER n 2 11 LYS n 2 12 GLN n 2 13 ALA n 2 14 SER n 2 15 GLU n 2 16 ILE n 2 17 LEU n 2 18 ASN n 2 19 GLU n 2 20 TYR n 2 21 PHE n 2 22 TYR n 2 23 SER n 2 24 HIS n 2 25 LEU n 2 26 SER n 2 27 ASN n 2 28 PRO n 2 29 TYR n 2 30 PRO n 2 31 SER n 2 32 GLU n 2 33 GLU n 2 34 ALA n 2 35 LYS n 2 36 GLU n 2 37 GLU n 2 38 LEU n 2 39 ALA n 2 40 ARG n 2 41 LYS n 2 42 CYS n 2 43 GLY n 2 44 ILE n 2 45 THR n 2 46 VAL n 2 47 SER n 2 48 GLN n 2 49 VAL n 2 50 SER n 2 51 ASN n 2 52 TRP n 2 53 PHE n 2 54 GLY n 2 55 ASN n 2 56 LYS n 2 57 ARG n 2 58 ILE n 2 59 ARG n 2 60 TYR n 2 61 LYS n 2 62 LYS n 2 63 ASN n 2 64 ILE n 2 65 GLY n 2 66 LYS n 2 67 ALA n 2 68 GLN n 2 69 GLU n 2 70 GLU n 2 71 ALA n 2 72 ASN n 2 73 LEU n 2 74 TYR n 2 75 ALA n 2 76 ALA n 3 1 DG n 3 2 DT n 3 3 DC n 3 4 DG n 3 5 DC n 3 6 DC n 3 7 DA n 3 8 DT n 3 9 DA n 3 10 DA n 3 11 DA n 3 12 DT n 3 13 DC n 3 14 DA n 3 15 DC n 4 1 DA n 4 2 DC n 4 3 DG n 4 4 DT n 4 5 DG n 4 6 DA n 4 7 DT n 4 8 DT n 4 9 DT n 4 10 DA n 4 11 DT n 4 12 DG n 4 13 DG n 4 14 DC n 4 15 DG n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? 'FRUIT FLY' ? ? ? ? ? ? ? ? 'DROSOPHILA MELANOGASTER' 7227 ? ? ? ? ? ? ? ? 'ESCHERICHIA COLI' 469008 ? ? ? ? ? ? 'BL21(DE3)' 'ROSETTA PLYSS' ? ? ? ? ? ? PLASMID ? ? ? 'UBXIVA PDEST14' ? ? 2 1 sample ? ? ? 'FRUIT FLY' ? ? ? ? ? ? ? ? 'DROSOPHILA MELANOGASTER' 7227 ? ? ? ? ? ? ? ? 'ESCHERICHIA COLI' 469008 ? ? ? ? ? ? 'BL21(DE3)' 'ROSETTA PLYSS' ? ? ? ? ? ? ? ? ? ? 'EXD2 PETG20A' ? ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 3 1 sample ? ? 'DROSOPHILA MELANOGASTER' 'FRUIT FLY' 7227 ? 4 1 sample ? ? 'DROSOPHILA MELANOGASTER' 'FRUIT FLY' 7227 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP UBX_DROME 1 ? ? P83949 ? 2 UNP EXD_DROME 2 ? ? P40427 ? 3 PDB 4CYC 3 ? ? 4CYC ? 4 PDB 4CYC 4 ? ? 4CYC ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4CYC A 2 ? 93 ? P83949 233 ? 324 ? -18 73 2 2 4CYC B 2 ? 76 ? P40427 238 ? 312 ? -2 72 3 3 4CYC C 1 ? 15 ? 4CYC 1 ? 15 ? 1 15 4 4 4CYC D 1 ? 15 ? 4CYC 16 ? 30 ? 16 30 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4CYC MET A 1 ? UNP P83949 ? ? 'expression tag' -19 1 2 4CYC GLY B 1 ? UNP P40427 ? ? 'expression tag' -3 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4CYC _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.48 _exptl_crystal.density_percent_sol 68.5 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.1 M AMMONIUM PHOSPHATE, pH 7.5' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2012-02-03 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.38530 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SOLEIL BEAMLINE PROXIMA 1' _diffrn_source.pdbx_synchrotron_site SOLEIL _diffrn_source.pdbx_synchrotron_beamline 'PROXIMA 1' _diffrn_source.pdbx_wavelength 1.38530 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4CYC _reflns.observed_criterion_sigma_I -3.7 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 84.62 _reflns.d_resolution_high 2.36 _reflns.number_obs 17094 _reflns.number_all ? _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.04 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 41.20 _reflns.B_iso_Wilson_estimate 83.97 _reflns.pdbx_redundancy 10.8 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.36 _reflns_shell.d_res_low 2.37 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.97 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.40 _reflns_shell.pdbx_redundancy 10.8 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4CYC _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 17038 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 25.00 _refine.ls_d_res_high 2.36 _refine.ls_percent_reflns_obs 99.94 _refine.ls_R_factor_obs 0.2128 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2121 _refine.ls_R_factor_R_free 0.2268 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.07 _refine.ls_number_reflns_R_free 863 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.9425 _refine.correlation_coeff_Fo_to_Fc_free 0.9429 _refine.B_iso_mean 87.18 _refine.aniso_B[1][1] -3.8322 _refine.aniso_B[2][2] -3.8322 _refine.aniso_B[3][3] 7.6643 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 4BZL' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI 0.210 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI 0.171 _refine.pdbx_overall_SU_R_Blow_DPI 0.218 _refine.pdbx_overall_SU_R_free_Blow_DPI 0.174 # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 4CYC _refine_analyze.Luzzati_coordinate_error_obs 0.828 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1079 _refine_hist.pdbx_number_atoms_nucleic_acid 609 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 68 _refine_hist.number_atoms_total 1756 _refine_hist.d_res_high 2.36 _refine_hist.d_res_low 25.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function t_bond_d 0.009 ? 2.00 1807 'X-RAY DIFFRACTION' HARMONIC t_angle_deg 0.88 ? 2.00 2556 'X-RAY DIFFRACTION' HARMONIC t_dihedral_angle_d ? ? 2.00 572 'X-RAY DIFFRACTION' SINUSOIDAL t_incorr_chiral_ct ? ? ? ? 'X-RAY DIFFRACTION' ? t_pseud_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_trig_c_planes ? ? 2.00 28 'X-RAY DIFFRACTION' HARMONIC t_gen_planes ? ? 5.00 190 'X-RAY DIFFRACTION' HARMONIC t_it ? ? 20.00 1807 'X-RAY DIFFRACTION' HARMONIC t_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? t_omega_torsion 2.02 ? ? ? 'X-RAY DIFFRACTION' ? t_other_torsion 21.77 ? ? ? 'X-RAY DIFFRACTION' ? t_improper_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_chiral_improper_torsion ? ? 5.00 230 'X-RAY DIFFRACTION' SEMIHARMONIC t_sum_occupancies ? ? 1.00 2 'X-RAY DIFFRACTION' HARMONIC t_utility_distance ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_ideal_dist_contact ? ? 4.00 1909 'X-RAY DIFFRACTION' SEMIHARMONIC # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 9 _refine_ls_shell.d_res_high 2.36 _refine_ls_shell.d_res_low 2.50 _refine_ls_shell.number_reflns_R_work 2579 _refine_ls_shell.R_factor_R_work 0.2472 _refine_ls_shell.percent_reflns_obs 99.94 _refine_ls_shell.R_factor_R_free 0.2745 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 5.18 _refine_ls_shell.number_reflns_R_free 141 _refine_ls_shell.number_reflns_all 2720 _refine_ls_shell.R_factor_all 0.2487 # _struct.entry_id 4CYC _struct.title 'CRYSTAL STRUCTURE OF A UBX-EXD-DNA COMPLEX INCLUDING THE HEXAPEPTIDE AND UBDA MOTIFS' _struct.pdbx_descriptor 'HOMEOTIC PROTEIN ULTRABITHORAX, HOMEOBOX PROTEIN EXTRADENTICLE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4CYC _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text 'TRANSCRIPTION, HOX, PBC, DNA PROTEIN COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? H N N 5 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 TYR A 9 ? ALA A 13 ? TYR A -11 ALA A -7 5 ? 5 HELX_P HELX_P2 2 THR A 29 ? ASN A 43 ? THR A 9 ASN A 23 1 ? 15 HELX_P HELX_P3 3 THR A 47 ? CYS A 59 ? THR A 27 CYS A 39 1 ? 13 HELX_P HELX_P4 4 THR A 61 ? ALA A 82 ? THR A 41 ALA A 62 1 ? 22 HELX_P HELX_P5 5 SER B 10 ? HIS B 24 ? SER B 6 HIS B 20 1 ? 15 HELX_P HELX_P6 6 SER B 31 ? GLY B 43 ? SER B 27 GLY B 39 1 ? 13 HELX_P HELX_P7 7 THR B 45 ? ASN B 63 ? THR B 41 ASN B 59 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog1 hydrog ? ? C DC 3 N3 ? ? ? 1_555 D DG 15 N1 ? ? C DC 3 D DG 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? C DC 3 N4 ? ? ? 1_555 D DG 15 O6 ? ? C DC 3 D DG 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? C DC 3 O2 ? ? ? 1_555 D DG 15 N2 ? ? C DC 3 D DG 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? C DG 4 N1 ? ? ? 1_555 D DC 14 N3 ? ? C DG 4 D DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? C DG 4 N2 ? ? ? 1_555 D DC 14 O2 ? ? C DG 4 D DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? C DG 4 O6 ? ? ? 1_555 D DC 14 N4 ? ? C DG 4 D DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? C DC 5 N3 ? ? ? 1_555 D DG 13 N1 ? ? C DC 5 D DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? C DC 5 N4 ? ? ? 1_555 D DG 13 O6 ? ? C DC 5 D DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? C DC 5 O2 ? ? ? 1_555 D DG 13 N2 ? ? C DC 5 D DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? C DC 6 N3 ? ? ? 1_555 D DG 12 N1 ? ? C DC 6 D DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? C DC 6 N4 ? ? ? 1_555 D DG 12 O6 ? ? C DC 6 D DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? C DC 6 O2 ? ? ? 1_555 D DG 12 N2 ? ? C DC 6 D DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? C DA 7 N1 ? ? ? 1_555 D DT 11 N3 ? ? C DA 7 D DT 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? C DA 7 N6 ? ? ? 1_555 D DT 11 O4 ? ? C DA 7 D DT 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? C DT 8 N3 ? ? ? 1_555 D DA 10 N1 ? ? C DT 8 D DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? C DT 8 O4 ? ? ? 1_555 D DA 10 N6 ? ? C DT 8 D DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? C DA 9 N1 ? ? ? 1_555 D DT 9 N3 ? ? C DA 9 D DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? C DA 9 N6 ? ? ? 1_555 D DT 9 O4 ? ? C DA 9 D DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? C DA 10 N1 ? ? ? 1_555 D DT 8 N3 ? ? C DA 10 D DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? C DA 10 N6 ? ? ? 1_555 D DT 8 O4 ? ? C DA 10 D DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? C DA 11 N1 ? ? ? 1_555 D DT 7 N3 ? ? C DA 11 D DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? C DA 11 N6 ? ? ? 1_555 D DT 7 O4 ? ? C DA 11 D DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? C DT 12 N3 ? ? ? 1_555 D DA 6 N1 ? ? C DT 12 D DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? C DT 12 O4 ? ? ? 1_555 D DA 6 N6 ? ? C DT 12 D DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? C DC 13 N3 ? ? ? 1_555 D DG 5 N1 ? ? C DC 13 D DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? C DC 13 N4 ? ? ? 1_555 D DG 5 O6 ? ? C DC 13 D DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? C DC 13 O2 ? ? ? 1_555 D DG 5 N2 ? ? C DC 13 D DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? C DA 14 N1 ? ? ? 1_555 D DT 4 N3 ? ? C DA 14 D DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? C DA 14 N6 ? ? ? 1_555 D DT 4 O4 ? ? C DA 14 D DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? C DC 15 N3 ? ? ? 1_555 D DG 3 N1 ? ? C DC 15 D DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? C DC 15 N4 ? ? ? 1_555 D DG 3 O6 ? ? C DC 15 D DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? C DC 15 O2 ? ? ? 1_555 D DG 3 N2 ? ? C DC 15 D DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 4CYC _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4CYC _atom_sites.fract_transf_matrix[1][1] 0.010235 _atom_sites.fract_transf_matrix[1][2] 0.005909 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011818 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013562 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -19 ? ? ? A . n A 1 2 GLN 2 -18 ? ? ? A . n A 1 3 ALA 3 -17 ? ? ? A . n A 1 4 SER 4 -16 ? ? ? A . n A 1 5 ASN 5 -15 ? ? ? A . n A 1 6 HIS 6 -14 ? ? ? A . n A 1 7 THR 7 -13 ? ? ? A . n A 1 8 PHE 8 -12 -12 PHE PHE A . n A 1 9 TYR 9 -11 -11 TYR TYR A . n A 1 10 PRO 10 -10 -10 PRO PRO A . n A 1 11 TRP 11 -9 -9 TRP TRP A . n A 1 12 MET 12 -8 -8 MET MET A . n A 1 13 ALA 13 -7 -7 ALA ALA A . n A 1 14 ILE 14 -6 ? ? ? A . n A 1 15 ALA 15 -5 ? ? ? A . n A 1 16 GLY 16 -4 ? ? ? A . n A 1 17 THR 17 -3 ? ? ? A . n A 1 18 ASN 18 -2 ? ? ? A . n A 1 19 GLY 19 -1 ? ? ? A . n A 1 20 LEU 20 0 ? ? ? A . n A 1 21 ARG 21 1 ? ? ? A . n A 1 22 ARG 22 2 ? ? ? A . n A 1 23 ARG 23 3 ? ? ? A . n A 1 24 GLY 24 4 ? ? ? A . n A 1 25 ARG 25 5 5 ARG ARG A . n A 1 26 GLN 26 6 6 GLN GLN A . n A 1 27 THR 27 7 7 THR THR A . n A 1 28 TYR 28 8 8 TYR TYR A . n A 1 29 THR 29 9 9 THR THR A . n A 1 30 ARG 30 10 10 ARG ARG A . n A 1 31 TYR 31 11 11 TYR TYR A . n A 1 32 GLN 32 12 12 GLN GLN A . n A 1 33 THR 33 13 13 THR THR A . n A 1 34 LEU 34 14 14 LEU LEU A . n A 1 35 GLU 35 15 15 GLU GLU A . n A 1 36 LEU 36 16 16 LEU LEU A . n A 1 37 GLU 37 17 17 GLU GLU A . n A 1 38 LYS 38 18 18 LYS LYS A . n A 1 39 GLU 39 19 19 GLU GLU A . n A 1 40 PHE 40 20 20 PHE PHE A . n A 1 41 HIS 41 21 21 HIS HIS A . n A 1 42 THR 42 22 22 THR THR A . n A 1 43 ASN 43 23 23 ASN ASN A . n A 1 44 HIS 44 24 24 HIS HIS A . n A 1 45 TYR 45 25 25 TYR TYR A . n A 1 46 LEU 46 26 26 LEU LEU A . n A 1 47 THR 47 27 27 THR THR A . n A 1 48 ARG 48 28 28 ARG ARG A . n A 1 49 ARG 49 29 29 ARG ARG A . n A 1 50 ARG 50 30 30 ARG ARG A . n A 1 51 ARG 51 31 31 ARG ARG A . n A 1 52 ILE 52 32 32 ILE ILE A . n A 1 53 GLU 53 33 33 GLU GLU A . n A 1 54 MET 54 34 34 MET MET A . n A 1 55 ALA 55 35 35 ALA ALA A . n A 1 56 HIS 56 36 36 HIS HIS A . n A 1 57 ALA 57 37 37 ALA ALA A . n A 1 58 LEU 58 38 38 LEU LEU A . n A 1 59 CYS 59 39 39 CYS CYS A . n A 1 60 LEU 60 40 40 LEU LEU A . n A 1 61 THR 61 41 41 THR THR A . n A 1 62 GLU 62 42 42 GLU GLU A . n A 1 63 ARG 63 43 43 ARG ARG A . n A 1 64 GLN 64 44 44 GLN GLN A . n A 1 65 ILE 65 45 45 ILE ILE A . n A 1 66 LYS 66 46 46 LYS LYS A . n A 1 67 ILE 67 47 47 ILE ILE A . n A 1 68 TRP 68 48 48 TRP TRP A . n A 1 69 PHE 69 49 49 PHE PHE A . n A 1 70 GLN 70 50 50 GLN GLN A . n A 1 71 ASN 71 51 51 ASN ASN A . n A 1 72 ARG 72 52 52 ARG ARG A . n A 1 73 ARG 73 53 53 ARG ARG A . n A 1 74 MET 74 54 54 MET MET A . n A 1 75 LYS 75 55 55 LYS LYS A . n A 1 76 LEU 76 56 56 LEU LEU A . n A 1 77 LYS 77 57 57 LYS LYS A . n A 1 78 LYS 78 58 58 LYS LYS A . n A 1 79 GLU 79 59 59 GLU GLU A . n A 1 80 ILE 80 60 60 ILE ILE A . n A 1 81 GLN 81 61 61 GLN GLN A . n A 1 82 ALA 82 62 62 ALA ALA A . n A 1 83 ILE 83 63 63 ILE ILE A . n A 1 84 LYS 84 64 64 LYS LYS A . n A 1 85 GLU 85 65 ? ? ? A . n A 1 86 LEU 86 66 ? ? ? A . n A 1 87 ASN 87 67 ? ? ? A . n A 1 88 GLU 88 68 ? ? ? A . n A 1 89 GLN 89 69 ? ? ? A . n A 1 90 GLU 90 70 ? ? ? A . n A 1 91 LYS 91 71 ? ? ? A . n A 1 92 GLN 92 72 ? ? ? A . n A 1 93 ALA 93 73 ? ? ? A . n B 2 1 GLY 1 -3 ? ? ? B . n B 2 2 ALA 2 -2 ? ? ? B . n B 2 3 ARG 3 -1 ? ? ? B . n B 2 4 ARG 4 0 ? ? ? B . n B 2 5 LYS 5 1 ? ? ? B . n B 2 6 ARG 6 2 ? ? ? B . n B 2 7 ARG 7 3 3 ARG ARG B . n B 2 8 ASN 8 4 4 ASN ASN B . n B 2 9 PHE 9 5 5 PHE PHE B . n B 2 10 SER 10 6 6 SER SER B . n B 2 11 LYS 11 7 7 LYS LYS B . n B 2 12 GLN 12 8 8 GLN GLN B . n B 2 13 ALA 13 9 9 ALA ALA B . n B 2 14 SER 14 10 10 SER SER B . n B 2 15 GLU 15 11 11 GLU GLU B . n B 2 16 ILE 16 12 12 ILE ILE B . n B 2 17 LEU 17 13 13 LEU LEU B . n B 2 18 ASN 18 14 14 ASN ASN B . n B 2 19 GLU 19 15 15 GLU GLU B . n B 2 20 TYR 20 16 16 TYR TYR B . n B 2 21 PHE 21 17 17 PHE PHE B . n B 2 22 TYR 22 18 18 TYR TYR B . n B 2 23 SER 23 19 19 SER SER B . n B 2 24 HIS 24 20 20 HIS HIS B . n B 2 25 LEU 25 21 21 LEU LEU B . n B 2 26 SER 26 22 22 SER SER B . n B 2 27 ASN 27 23 23 ASN ASN B . n B 2 28 PRO 28 24 24 PRO PRO B . n B 2 29 TYR 29 25 25 TYR TYR B . n B 2 30 PRO 30 26 26 PRO PRO B . n B 2 31 SER 31 27 27 SER SER B . n B 2 32 GLU 32 28 28 GLU GLU B . n B 2 33 GLU 33 29 29 GLU GLU B . n B 2 34 ALA 34 30 30 ALA ALA B . n B 2 35 LYS 35 31 31 LYS LYS B . n B 2 36 GLU 36 32 32 GLU GLU B . n B 2 37 GLU 37 33 33 GLU GLU B . n B 2 38 LEU 38 34 34 LEU LEU B . n B 2 39 ALA 39 35 35 ALA ALA B . n B 2 40 ARG 40 36 36 ARG ARG B . n B 2 41 LYS 41 37 37 LYS LYS B . n B 2 42 CYS 42 38 38 CYS CYS B . n B 2 43 GLY 43 39 39 GLY GLY B . n B 2 44 ILE 44 40 40 ILE ILE B . n B 2 45 THR 45 41 41 THR THR B . n B 2 46 VAL 46 42 42 VAL VAL B . n B 2 47 SER 47 43 43 SER SER B . n B 2 48 GLN 48 44 44 GLN GLN B . n B 2 49 VAL 49 45 45 VAL VAL B . n B 2 50 SER 50 46 46 SER SER B . n B 2 51 ASN 51 47 47 ASN ASN B . n B 2 52 TRP 52 48 48 TRP TRP B . n B 2 53 PHE 53 49 49 PHE PHE B . n B 2 54 GLY 54 50 50 GLY GLY B . n B 2 55 ASN 55 51 51 ASN ASN B . n B 2 56 LYS 56 52 52 LYS LYS B . n B 2 57 ARG 57 53 53 ARG ARG B . n B 2 58 ILE 58 54 54 ILE ILE B . n B 2 59 ARG 59 55 55 ARG ARG B . n B 2 60 TYR 60 56 56 TYR TYR B . n B 2 61 LYS 61 57 57 LYS LYS B . n B 2 62 LYS 62 58 58 LYS LYS B . n B 2 63 ASN 63 59 59 ASN ASN B . n B 2 64 ILE 64 60 60 ILE ILE B . n B 2 65 GLY 65 61 ? ? ? B . n B 2 66 LYS 66 62 ? ? ? B . n B 2 67 ALA 67 63 ? ? ? B . n B 2 68 GLN 68 64 ? ? ? B . n B 2 69 GLU 69 65 ? ? ? B . n B 2 70 GLU 70 66 ? ? ? B . n B 2 71 ALA 71 67 ? ? ? B . n B 2 72 ASN 72 68 ? ? ? B . n B 2 73 LEU 73 69 ? ? ? B . n B 2 74 TYR 74 70 ? ? ? B . n B 2 75 ALA 75 71 ? ? ? B . n B 2 76 ALA 76 72 ? ? ? B . n C 3 1 DG 1 1 1 DG DG C . n C 3 2 DT 2 2 2 DT DT C . n C 3 3 DC 3 3 3 DC DC C . n C 3 4 DG 4 4 4 DG DG C . n C 3 5 DC 5 5 5 DC DC C . n C 3 6 DC 6 6 6 DC DC C . n C 3 7 DA 7 7 7 DA DA C . n C 3 8 DT 8 8 8 DT DT C . n C 3 9 DA 9 9 9 DA DA C . n C 3 10 DA 10 10 10 DA DA C . n C 3 11 DA 11 11 11 DA DA C . n C 3 12 DT 12 12 12 DT DT C . n C 3 13 DC 13 13 13 DC DC C . n C 3 14 DA 14 14 14 DA DA C . n C 3 15 DC 15 15 15 DC DC C . n D 4 1 DA 1 16 16 DA DA D . n D 4 2 DC 2 17 17 DC DC D . n D 4 3 DG 3 18 18 DG DG D . n D 4 4 DT 4 19 19 DT DT D . n D 4 5 DG 5 20 20 DG DG D . n D 4 6 DA 6 21 21 DA DA D . n D 4 7 DT 7 22 22 DT DT D . n D 4 8 DT 8 23 23 DT DT D . n D 4 9 DT 9 24 24 DT DT D . n D 4 10 DA 10 25 25 DA DA D . n D 4 11 DT 11 26 26 DT DT D . n D 4 12 DG 12 27 27 DG DG D . n D 4 13 DG 13 28 28 DG DG D . n D 4 14 DC 14 29 29 DC DC D . n D 4 15 DG 15 30 30 DG DG D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 HOH 1 2001 2001 HOH HOH A . E 5 HOH 2 2002 2002 HOH HOH A . E 5 HOH 3 2003 2003 HOH HOH A . E 5 HOH 4 2004 2004 HOH HOH A . E 5 HOH 5 2005 2005 HOH HOH A . E 5 HOH 6 2006 2006 HOH HOH A . E 5 HOH 7 2007 2007 HOH HOH A . E 5 HOH 8 2008 2008 HOH HOH A . E 5 HOH 9 2009 2009 HOH HOH A . E 5 HOH 10 2010 2010 HOH HOH A . E 5 HOH 11 2011 2011 HOH HOH A . E 5 HOH 12 2012 2012 HOH HOH A . E 5 HOH 13 2013 2013 HOH HOH A . E 5 HOH 14 2014 2014 HOH HOH A . E 5 HOH 15 2015 2015 HOH HOH A . E 5 HOH 16 2016 2016 HOH HOH A . E 5 HOH 17 2017 2017 HOH HOH A . E 5 HOH 18 2018 2018 HOH HOH A . E 5 HOH 19 2019 2019 HOH HOH A . E 5 HOH 20 2020 2020 HOH HOH A . E 5 HOH 21 2021 2021 HOH HOH A . E 5 HOH 22 2022 2022 HOH HOH A . F 5 HOH 1 2001 2001 HOH HOH B . F 5 HOH 2 2002 2002 HOH HOH B . F 5 HOH 3 2003 2003 HOH HOH B . F 5 HOH 4 2004 2004 HOH HOH B . F 5 HOH 5 2005 2005 HOH HOH B . F 5 HOH 6 2006 2006 HOH HOH B . F 5 HOH 7 2007 2007 HOH HOH B . F 5 HOH 8 2008 2008 HOH HOH B . F 5 HOH 9 2009 2009 HOH HOH B . F 5 HOH 10 2010 2010 HOH HOH B . F 5 HOH 11 2011 2011 HOH HOH B . F 5 HOH 12 2012 2012 HOH HOH B . F 5 HOH 13 2013 2013 HOH HOH B . F 5 HOH 14 2014 2014 HOH HOH B . F 5 HOH 15 2015 2015 HOH HOH B . F 5 HOH 16 2016 2016 HOH HOH B . F 5 HOH 17 2017 2017 HOH HOH B . F 5 HOH 18 2018 2018 HOH HOH B . F 5 HOH 19 2019 2019 HOH HOH B . F 5 HOH 20 2020 2020 HOH HOH B . G 5 HOH 1 2001 2001 HOH HOH C . G 5 HOH 2 2002 2002 HOH HOH C . G 5 HOH 3 2003 2003 HOH HOH C . G 5 HOH 4 2004 2004 HOH HOH C . G 5 HOH 5 2005 2005 HOH HOH C . G 5 HOH 6 2006 2006 HOH HOH C . G 5 HOH 7 2007 2007 HOH HOH C . G 5 HOH 8 2008 2008 HOH HOH C . G 5 HOH 9 2009 2009 HOH HOH C . G 5 HOH 10 2010 2010 HOH HOH C . G 5 HOH 11 2011 2011 HOH HOH C . G 5 HOH 12 2012 2012 HOH HOH C . G 5 HOH 13 2013 2013 HOH HOH C . G 5 HOH 14 2014 2014 HOH HOH C . G 5 HOH 15 2015 2015 HOH HOH C . H 5 HOH 1 2001 2001 HOH HOH D . H 5 HOH 2 2002 2002 HOH HOH D . H 5 HOH 3 2003 2003 HOH HOH D . H 5 HOH 4 2004 2004 HOH HOH D . H 5 HOH 5 2005 2005 HOH HOH D . H 5 HOH 6 2006 2006 HOH HOH D . H 5 HOH 7 2007 2007 HOH HOH D . H 5 HOH 8 2008 2008 HOH HOH D . H 5 HOH 9 2009 2009 HOH HOH D . H 5 HOH 10 2010 2010 HOH HOH D . H 5 HOH 11 2011 2011 HOH HOH D . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5210 ? 1 MORE -28.5 ? 1 'SSA (A^2)' 12250 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2015-02-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -41.3016 15.9532 8.9342 0.1030 -0.4696 -0.1948 -0.1121 -0.1088 -0.0142 4.6769 5.6381 11.0884 -0.6148 -1.6676 -1.3876 -0.1314 -0.0629 0.7313 0.7699 0.3419 -0.2977 -1.4859 0.3990 -0.2105 'X-RAY DIFFRACTION' 2 ? refined -46.6448 5.8180 -16.1441 0.2836 -0.2435 -0.1770 -0.1484 -0.0454 0.0368 3.8978 3.0977 16.4234 -1.0262 0.8795 0.2988 0.1224 0.4397 -0.0097 -0.4562 -0.1423 0.0803 -0.6765 0.0587 0.0199 'X-RAY DIFFRACTION' 3 ? refined -39.2996 13.2077 0.0095 0.0777 -0.2972 -0.0396 -0.2833 -0.1139 0.0059 4.0814 13.6297 14.6098 3.3726 -1.6477 -4.8019 -0.4335 0.0603 0.4909 -0.5141 0.1258 -0.5250 -1.1238 0.5396 0.3077 'X-RAY DIFFRACTION' 4 ? refined -41.9668 7.5963 -2.0011 0.2032 -0.2509 0.0554 -0.2147 -0.0137 0.0246 -0.0594 4.4397 12.8131 -1.2302 -0.4757 -3.3009 0.0611 -0.0513 -0.0593 -0.3246 -0.2167 -0.4859 -0.3239 0.2974 0.1556 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? 'CHAIN A' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? 'CHAIN B' 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? 'CHAIN C' 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? 'CHAIN D' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal BUSTER refinement 2.11.5 ? 1 XDS 'data reduction' . ? 2 TRUNCATE 'data scaling' . ? 3 PHASER phasing . ? 4 # _pdbx_entry_details.entry_id 4CYC _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;FIRST METHIONINE FROM EXPRESSION VECTOR FIRST GLYCINE FROM EXPRESSION VECTOR ; # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" C DG 1 ? ? "C1'" C DG 1 ? ? N9 C DG 1 ? ? 110.75 108.30 2.45 0.30 N 2 1 "O4'" C DT 8 ? ? "C1'" C DT 8 ? ? N1 C DT 8 ? ? 111.01 108.30 2.71 0.30 N 3 1 "O4'" D DG 20 ? ? "C1'" D DG 20 ? ? N9 D DG 20 ? ? 110.58 108.30 2.28 0.30 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASN _pdbx_validate_torsion.auth_asym_id B _pdbx_validate_torsion.auth_seq_id 59 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -81.83 _pdbx_validate_torsion.psi 46.55 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id DT _pdbx_validate_planes.auth_asym_id D _pdbx_validate_planes.auth_seq_id 23 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.057 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -19 ? A MET 1 2 1 Y 1 A GLN -18 ? A GLN 2 3 1 Y 1 A ALA -17 ? A ALA 3 4 1 Y 1 A SER -16 ? A SER 4 5 1 Y 1 A ASN -15 ? A ASN 5 6 1 Y 1 A HIS -14 ? A HIS 6 7 1 Y 1 A THR -13 ? A THR 7 8 1 Y 1 A ILE -6 ? A ILE 14 9 1 Y 1 A ALA -5 ? A ALA 15 10 1 Y 1 A GLY -4 ? A GLY 16 11 1 Y 1 A THR -3 ? A THR 17 12 1 Y 1 A ASN -2 ? A ASN 18 13 1 Y 1 A GLY -1 ? A GLY 19 14 1 Y 1 A LEU 0 ? A LEU 20 15 1 Y 1 A ARG 1 ? A ARG 21 16 1 Y 1 A ARG 2 ? A ARG 22 17 1 Y 1 A ARG 3 ? A ARG 23 18 1 Y 1 A GLY 4 ? A GLY 24 19 1 Y 1 A GLU 65 ? A GLU 85 20 1 Y 1 A LEU 66 ? A LEU 86 21 1 Y 1 A ASN 67 ? A ASN 87 22 1 Y 1 A GLU 68 ? A GLU 88 23 1 Y 1 A GLN 69 ? A GLN 89 24 1 Y 1 A GLU 70 ? A GLU 90 25 1 Y 1 A LYS 71 ? A LYS 91 26 1 Y 1 A GLN 72 ? A GLN 92 27 1 Y 1 A ALA 73 ? A ALA 93 28 1 Y 1 B GLY -3 ? B GLY 1 29 1 Y 1 B ALA -2 ? B ALA 2 30 1 Y 1 B ARG -1 ? B ARG 3 31 1 Y 1 B ARG 0 ? B ARG 4 32 1 Y 1 B LYS 1 ? B LYS 5 33 1 Y 1 B ARG 2 ? B ARG 6 34 1 Y 1 B GLY 61 ? B GLY 65 35 1 Y 1 B LYS 62 ? B LYS 66 36 1 Y 1 B ALA 63 ? B ALA 67 37 1 Y 1 B GLN 64 ? B GLN 68 38 1 Y 1 B GLU 65 ? B GLU 69 39 1 Y 1 B GLU 66 ? B GLU 70 40 1 Y 1 B ALA 67 ? B ALA 71 41 1 Y 1 B ASN 68 ? B ASN 72 42 1 Y 1 B LEU 69 ? B LEU 73 43 1 Y 1 B TYR 70 ? B TYR 74 44 1 Y 1 B ALA 71 ? B ALA 75 45 1 Y 1 B ALA 72 ? B ALA 76 # _ndb_struct_conf_na.entry_id 4CYC _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C DC 3 1_555 D DG 15 1_555 0.575 -0.007 -0.216 -5.362 -12.185 6.340 1 C_DC3:DG30_D C 3 ? D 30 ? 19 1 1 C DG 4 1_555 D DC 14 1_555 -0.837 -0.193 0.167 -3.638 -14.987 -3.134 2 C_DG4:DC29_D C 4 ? D 29 ? 19 1 1 C DC 5 1_555 D DG 13 1_555 0.172 -0.211 0.341 -4.691 -8.214 -2.091 3 C_DC5:DG28_D C 5 ? D 28 ? 19 1 1 C DC 6 1_555 D DG 12 1_555 0.338 -0.238 0.041 -6.291 -10.657 -1.270 4 C_DC6:DG27_D C 6 ? D 27 ? 19 1 1 C DA 7 1_555 D DT 11 1_555 0.154 -0.210 0.108 3.518 -14.291 0.900 5 C_DA7:DT26_D C 7 ? D 26 ? 20 1 1 C DT 8 1_555 D DA 10 1_555 0.297 -0.052 0.191 7.441 -12.395 11.479 6 C_DT8:DA25_D C 8 ? D 25 ? 20 1 1 C DA 9 1_555 D DT 9 1_555 0.143 -0.130 -0.046 10.716 -13.726 8.453 7 C_DA9:DT24_D C 9 ? D 24 ? 20 1 1 C DA 10 1_555 D DT 8 1_555 0.143 -0.060 0.147 12.521 -21.553 6.811 8 C_DA10:DT23_D C 10 ? D 23 ? 20 1 1 C DA 11 1_555 D DT 7 1_555 0.086 -0.180 0.268 8.646 -15.168 4.811 9 C_DA11:DT22_D C 11 ? D 22 ? 20 1 1 C DT 12 1_555 D DA 6 1_555 -0.072 -0.134 -0.126 7.276 -14.146 6.158 10 C_DT12:DA21_D C 12 ? D 21 ? 20 1 1 C DC 13 1_555 D DG 5 1_555 0.273 -0.150 -0.036 -0.799 -17.885 0.628 11 C_DC13:DG20_D C 13 ? D 20 ? 19 1 1 C DA 14 1_555 D DT 4 1_555 0.094 -0.098 0.065 -5.718 -13.793 5.009 12 C_DA14:DT19_D C 14 ? D 19 ? 20 1 1 C DC 15 1_555 D DG 3 1_555 -0.107 -0.031 0.151 1.988 -7.864 0.878 13 C_DC15:DG18_D C 15 ? D 18 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C DC 3 1_555 D DG 15 1_555 C DG 4 1_555 D DC 14 1_555 -0.089 0.243 3.256 -2.337 8.755 28.049 -1.411 -0.329 3.182 17.495 4.670 29.449 1 CC_DC3DG4:DC29DG30_DD C 3 ? D 30 ? C 4 ? D 29 ? 1 C DG 4 1_555 D DC 14 1_555 C DC 5 1_555 D DG 13 1_555 -0.622 -0.131 3.349 -2.551 0.476 39.215 -0.253 0.612 3.380 0.708 3.796 39.297 2 CC_DG4DC5:DG28DC29_DD C 4 ? D 29 ? C 5 ? D 28 ? 1 C DC 5 1_555 D DG 13 1_555 C DC 6 1_555 D DG 12 1_555 0.385 0.102 3.332 4.483 2.355 37.175 -0.158 0.004 3.354 3.672 -6.992 37.506 3 CC_DC5DC6:DG27DG28_DD C 5 ? D 28 ? C 6 ? D 27 ? 1 C DC 6 1_555 D DG 12 1_555 C DA 7 1_555 D DT 11 1_555 -0.030 0.554 3.099 -1.013 8.057 30.940 -0.408 -0.124 3.139 14.785 1.859 31.962 4 CC_DC6DA7:DT26DG27_DD C 6 ? D 27 ? C 7 ? D 26 ? 1 C DA 7 1_555 D DT 11 1_555 C DT 8 1_555 D DA 10 1_555 1.108 -0.725 3.217 -1.327 1.100 30.766 -1.573 -2.337 3.140 2.070 2.498 30.813 5 CC_DA7DT8:DA25DT26_DD C 7 ? D 26 ? C 8 ? D 25 ? 1 C DT 8 1_555 D DA 10 1_555 C DA 9 1_555 D DT 9 1_555 -0.934 -0.243 3.121 -0.325 9.770 35.558 -1.640 1.437 2.962 15.636 0.520 36.835 6 CC_DT8DA9:DT24DA25_DD C 8 ? D 25 ? C 9 ? D 24 ? 1 C DA 9 1_555 D DT 9 1_555 C DA 10 1_555 D DT 8 1_555 0.275 0.363 3.212 0.137 5.929 33.969 -0.301 -0.443 3.229 10.053 -0.232 34.468 7 CC_DA9DA10:DT23DT24_DD C 9 ? D 24 ? C 10 ? D 23 ? 1 C DA 10 1_555 D DT 8 1_555 C DA 11 1_555 D DT 7 1_555 0.152 0.018 3.262 -0.909 1.287 38.395 -0.132 -0.344 3.256 1.956 1.381 38.427 8 CC_DA10DA11:DT22DT23_DD C 10 ? D 23 ? C 11 ? D 22 ? 1 C DA 11 1_555 D DT 7 1_555 C DT 12 1_555 D DA 6 1_555 0.517 -0.612 3.334 3.182 -3.628 32.106 -0.434 -0.346 3.415 -6.513 -5.713 32.457 9 CC_DA11DT12:DA21DT22_DD C 11 ? D 22 ? C 12 ? D 21 ? 1 C DT 12 1_555 D DA 6 1_555 C DC 13 1_555 D DG 5 1_555 -0.231 -0.474 3.374 0.274 4.808 40.851 -1.208 0.359 3.298 6.860 -0.391 41.122 10 CC_DT12DC13:DG20DA21_DD C 12 ? D 21 ? C 13 ? D 20 ? 1 C DC 13 1_555 D DG 5 1_555 C DA 14 1_555 D DT 4 1_555 0.388 0.660 3.455 0.603 8.650 32.911 -0.369 -0.559 3.517 14.948 -1.042 34.004 11 CC_DC13DA14:DT19DG20_DD C 13 ? D 20 ? C 14 ? D 19 ? 1 C DA 14 1_555 D DT 4 1_555 C DC 15 1_555 D DG 3 1_555 -1.084 1.524 3.139 -4.052 -5.886 40.081 2.808 1.136 2.987 -8.505 5.856 40.687 12 CC_DA14DC15:DG18DT19_DD C 14 ? D 19 ? C 15 ? D 18 ? # _pdbx_entity_nonpoly.entity_id 5 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #