HEADER MEMBRANE PROTEIN 16-APR-14 4CZB TITLE STRUCTURE OF THE SODIUM PROTON ANTIPORTER MJNHAP1 FROM TITLE 2 METHANOCALDOCOCCUS JANNASCHII AT PH 8. COMPND MOL_ID: 1; COMPND 2 MOLECULE: NA(+)/H(+) ANTIPORTER 1; COMPND 3 CHAIN: A, B, D; COMPND 4 FRAGMENT: TRANSPORTER DOMAIN, RESIDUES 1-426; COMPND 5 SYNONYM: MJNHAP1, MJNHAP1 ANTIPORTER; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NA(+)/H(+) ANTIPORTER 1; COMPND 9 CHAIN: C; COMPND 10 FRAGMENT: TRANSPORTER DOMAIN, RESIDUES 1-426; COMPND 11 SYNONYM: MJNHAP1, MJNHAP1 ANTIPORTER; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 2190; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET21A; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 11 ORGANISM_TAXID: 2190; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_VECTOR: PET21A KEYWDS MEMBRANE PROTEIN, ANTIPORTER, TRANSPORTER, EXCHANGER, CPA EXPDTA X-RAY DIFFRACTION AUTHOR D.WOEHLERT,C.PAULINO,E.KAPOTOVA,W.KUHLBRANDT,O.YILDIZ REVDAT 2 20-DEC-23 4CZB 1 REMARK LINK REVDAT 1 10-DEC-14 4CZB 0 JRNL AUTH C.PAULINO,D.WOEHLERT,O.YILDIZ,W.KUHLBRANDT JRNL TITL 3D EM MAP OF THE SODIUM PROTON ANTIPORTER MJNHAP1 FROM JRNL TITL 2 METHANOCALDOCOCCUS JANNASCHII JRNL REF ELIFE V. 3 2014 JRNL REFN ESSN 2050-084X JRNL PMID 25426803 JRNL DOI 10.7554/ELIFE.03583 REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 6.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 58249 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.252 REMARK 3 FREE R VALUE : 0.302 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3115 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4CZB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-APR-14. REMARK 100 THE DEPOSITION ID IS D_1290060384. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58249 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500 REMARK 200 RESOLUTION RANGE LOW (A) : 32.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.700 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.57000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4CZ8 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 8.2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 51.27200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 5410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -79.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 416 REMARK 465 LYS A 417 REMARK 465 PRO A 418 REMARK 465 LYS A 419 REMARK 465 TYR A 420 REMARK 465 LYS A 421 REMARK 465 GLU A 422 REMARK 465 GLU A 423 REMARK 465 SER A 424 REMARK 465 HIS A 425 REMARK 465 HIS A 426 REMARK 465 TYR B 420 REMARK 465 LYS B 421 REMARK 465 GLU B 422 REMARK 465 GLU B 423 REMARK 465 SER B 424 REMARK 465 HIS B 425 REMARK 465 HIS B 426 REMARK 465 ALA C 405 REMARK 465 GLY C 406 REMARK 465 MET C 407 REMARK 465 LEU C 408 REMARK 465 ALA C 409 REMARK 465 LEU C 410 REMARK 465 LYS C 411 REMARK 465 LEU C 412 REMARK 465 LEU C 413 REMARK 465 GLY C 414 REMARK 465 GLU C 415 REMARK 465 TYR C 416 REMARK 465 LYS C 417 REMARK 465 PRO C 418 REMARK 465 LYS C 419 REMARK 465 TYR C 420 REMARK 465 LYS C 421 REMARK 465 GLU C 422 REMARK 465 GLU C 423 REMARK 465 SER C 424 REMARK 465 HIS C 425 REMARK 465 HIS C 426 REMARK 465 PRO D 418 REMARK 465 LYS D 419 REMARK 465 TYR D 420 REMARK 465 LYS D 421 REMARK 465 GLU D 422 REMARK 465 GLU D 423 REMARK 465 SER D 424 REMARK 465 HIS D 425 REMARK 465 HIS D 426 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 148 OG1 THR A 152 2.17 REMARK 500 OG SER B 334 OE2 GLU B 415 2.18 REMARK 500 O ARG D 142 N ARG D 144 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 94 -91.00 -107.12 REMARK 500 VAL A 196 -70.05 -59.31 REMARK 500 HIS A 215 -114.39 54.70 REMARK 500 TYR A 217 6.19 -69.67 REMARK 500 ASP A 235 -71.61 -158.81 REMARK 500 ILE A 240 -80.20 -95.20 REMARK 500 PHE A 245 122.08 -173.61 REMARK 500 TYR A 304 10.05 -141.03 REMARK 500 ALA A 319 -75.89 -58.39 REMARK 500 LEU A 328 33.75 -99.50 REMARK 500 LEU A 412 -59.68 -139.90 REMARK 500 GLU B 2 106.49 -59.40 REMARK 500 THR B 94 -65.64 -107.03 REMARK 500 THR B 145 -175.74 -62.08 REMARK 500 ASN B 146 108.12 -51.29 REMARK 500 SER B 179 -94.53 -148.23 REMARK 500 HIS B 215 -118.92 54.87 REMARK 500 CYS B 241 -14.25 -141.11 REMARK 500 PHE B 305 -70.25 -65.28 REMARK 500 GLU B 344 -82.20 -101.80 REMARK 500 ALA B 405 -79.03 -29.48 REMARK 500 GLU B 415 -73.05 -69.46 REMARK 500 TYR B 416 73.17 41.53 REMARK 500 LYS C 28 -0.71 59.24 REMARK 500 GLN C 47 37.76 37.79 REMARK 500 THR C 94 -70.42 -52.39 REMARK 500 LEU C 112 54.91 -113.86 REMARK 500 THR C 131 -155.24 -125.23 REMARK 500 ASN C 146 76.30 54.52 REMARK 500 LEU C 177 -100.49 -140.89 REMARK 500 SER C 179 77.41 53.48 REMARK 500 GLU C 216 -47.43 63.12 REMARK 500 ASP C 235 -75.63 -160.57 REMARK 500 ASP C 266 78.22 54.14 REMARK 500 LEU C 318 -61.57 -120.75 REMARK 500 LYS C 368 -110.37 -89.69 REMARK 500 LEU C 395 -71.18 -59.36 REMARK 500 VAL D 85 18.33 -140.02 REMARK 500 THR D 94 -78.36 -109.17 REMARK 500 THR D 128 40.34 -89.25 REMARK 500 VAL D 143 -43.46 36.98 REMARK 500 SER D 180 -111.69 53.57 REMARK 500 SER D 181 -166.75 58.66 REMARK 500 ALA D 191 -71.57 -53.55 REMARK 500 HIS D 215 -101.69 57.89 REMARK 500 ASP D 235 -75.00 -122.70 REMARK 500 ASP D 266 75.84 51.79 REMARK 500 LEU D 318 -61.22 -124.72 REMARK 500 GLU D 344 58.16 -98.52 REMARK 500 ALA D 405 -64.94 -27.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A1416 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 209 O REMARK 620 2 ILE A 210 O 76.1 REMARK 620 3 CYS A 212 O 54.6 101.9 REMARK 620 4 ASP A 267 OD1 104.7 123.1 125.2 REMARK 620 5 ASP A 267 OD2 61.7 98.5 104.1 44.9 REMARK 620 6 ASP A 269 OD2 63.2 138.8 60.1 65.4 57.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K C1405 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE C 209 O REMARK 620 2 ILE C 210 O 75.1 REMARK 620 3 CYS C 212 O 59.6 71.2 REMARK 620 4 ASP C 267 OD1 125.8 125.5 162.5 REMARK 620 5 ASP C 267 OD2 79.3 110.1 137.6 47.3 REMARK 620 6 ASP C 269 OD2 65.1 140.1 89.6 79.8 61.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TAM B 1420 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K C 1405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 1416 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CZ8 RELATED DB: PDB REMARK 900 STRUCTURE OF THE SODIUM PROTON ANTIPORTER PANHAP FROM PYROCOCCUS REMARK 900 ABYSSII AT PH 8. REMARK 900 RELATED ID: 4CZ9 RELATED DB: PDB REMARK 900 STRUCTURE OF THE SODIUM PROTON ANTIPORTER PANHAP FROM PYROCOCCUS REMARK 900 ABYSSII AT PH 4. REMARK 900 RELATED ID: 4CZA RELATED DB: PDB REMARK 900 STRUCTURE OF THE SODIUM PROTON ANTIPORTER PANHAP FROM PYROCOCCUS REMARK 900 ABYSSII WITH BOUND THALLIUM ION. DBREF 4CZB A 1 426 UNP Q60362 NAH1_METJA 1 426 DBREF 4CZB B 1 426 UNP Q60362 NAH1_METJA 1 426 DBREF 4CZB C 1 426 UNP Q60362 NAH1_METJA 1 426 DBREF 4CZB D 1 426 UNP Q60362 NAH1_METJA 1 426 SEQADV 4CZB GLU C 367 UNP Q60362 ASP 367 CONFLICT SEQRES 1 A 426 MET GLU LEU MET MET ALA ILE GLY TYR LEU GLY LEU ALA SEQRES 2 A 426 LEU VAL LEU GLY SER LEU VAL ALA LYS ILE ALA GLU LYS SEQRES 3 A 426 LEU LYS ILE PRO ASP ILE PRO LEU LEU LEU LEU LEU GLY SEQRES 4 A 426 LEU ILE ILE GLY PRO PHE LEU GLN ILE ILE PRO SER ASP SEQRES 5 A 426 SER ALA MET GLU ILE PHE GLU TYR ALA GLY PRO ILE GLY SEQRES 6 A 426 LEU ILE PHE ILE LEU LEU GLY GLY ALA PHE THR MET ARG SEQRES 7 A 426 ILE SER LEU LEU LYS ARG VAL ILE LYS THR VAL VAL ARG SEQRES 8 A 426 LEU ASP THR ILE THR PHE LEU ILE THR LEU LEU ILE SER SEQRES 9 A 426 GLY PHE ILE PHE ASN MET VAL LEU ASN LEU PRO TYR THR SEQRES 10 A 426 SER PRO VAL GLY TYR LEU PHE GLY ALA ILE THR ALA ALA SEQRES 11 A 426 THR ASP PRO ALA THR LEU ILE PRO VAL PHE SER ARG VAL SEQRES 12 A 426 ARG THR ASN PRO GLU VAL ALA ILE THR LEU GLU ALA GLU SEQRES 13 A 426 SER ILE PHE ASN ASP PRO LEU GLY ILE VAL SER THR SER SEQRES 14 A 426 VAL ILE LEU GLY LEU PHE GLY LEU PHE SER SER SER ASN SEQRES 15 A 426 PRO LEU ILE ASP LEU ILE THR LEU ALA GLY GLY ALA ILE SEQRES 16 A 426 VAL VAL GLY LEU LEU LEU ALA LYS ILE TYR GLU LYS ILE SEQRES 17 A 426 ILE ILE HIS CYS ASP PHE HIS GLU TYR VAL ALA PRO LEU SEQRES 18 A 426 VAL LEU GLY GLY ALA MET LEU LEU LEU TYR VAL GLY ASP SEQRES 19 A 426 ASP LEU LEU PRO SER ILE CYS GLY TYR GLY PHE SER GLY SEQRES 20 A 426 TYR MET ALA VAL ALA ILE MET GLY LEU TYR LEU GLY ASP SEQRES 21 A 426 ALA LEU PHE ARG ALA ASP ASP ILE ASP TYR LYS TYR ILE SEQRES 22 A 426 VAL SER PHE CYS ASP ASP LEU SER LEU LEU ALA ARG VAL SEQRES 23 A 426 PHE ILE PHE VAL PHE LEU GLY ALA CYS ILE LYS LEU SER SEQRES 24 A 426 MET LEU GLU ASN TYR PHE ILE PRO GLY LEU LEU VAL ALA SEQRES 25 A 426 LEU GLY SER ILE PHE LEU ALA ARG PRO LEU GLY VAL PHE SEQRES 26 A 426 LEU GLY LEU ILE GLY SER LYS HIS SER PHE LYS GLU LYS SEQRES 27 A 426 LEU TYR PHE ALA LEU GLU GLY PRO ARG GLY VAL VAL PRO SEQRES 28 A 426 ALA ALA LEU ALA VAL THR VAL GLY ILE GLU ILE LEU LYS SEQRES 29 A 426 ASN ALA ASP LYS ILE PRO ALA SER ILE THR LYS TYR ILE SEQRES 30 A 426 THR PRO THR ASP ILE ALA GLY THR ILE ILE ILE GLY THR SEQRES 31 A 426 PHE MET THR ILE LEU LEU SER VAL ILE LEU GLU ALA SER SEQRES 32 A 426 TRP ALA GLY MET LEU ALA LEU LYS LEU LEU GLY GLU TYR SEQRES 33 A 426 LYS PRO LYS TYR LYS GLU GLU SER HIS HIS SEQRES 1 B 426 MET GLU LEU MET MET ALA ILE GLY TYR LEU GLY LEU ALA SEQRES 2 B 426 LEU VAL LEU GLY SER LEU VAL ALA LYS ILE ALA GLU LYS SEQRES 3 B 426 LEU LYS ILE PRO ASP ILE PRO LEU LEU LEU LEU LEU GLY SEQRES 4 B 426 LEU ILE ILE GLY PRO PHE LEU GLN ILE ILE PRO SER ASP SEQRES 5 B 426 SER ALA MET GLU ILE PHE GLU TYR ALA GLY PRO ILE GLY SEQRES 6 B 426 LEU ILE PHE ILE LEU LEU GLY GLY ALA PHE THR MET ARG SEQRES 7 B 426 ILE SER LEU LEU LYS ARG VAL ILE LYS THR VAL VAL ARG SEQRES 8 B 426 LEU ASP THR ILE THR PHE LEU ILE THR LEU LEU ILE SER SEQRES 9 B 426 GLY PHE ILE PHE ASN MET VAL LEU ASN LEU PRO TYR THR SEQRES 10 B 426 SER PRO VAL GLY TYR LEU PHE GLY ALA ILE THR ALA ALA SEQRES 11 B 426 THR ASP PRO ALA THR LEU ILE PRO VAL PHE SER ARG VAL SEQRES 12 B 426 ARG THR ASN PRO GLU VAL ALA ILE THR LEU GLU ALA GLU SEQRES 13 B 426 SER ILE PHE ASN ASP PRO LEU GLY ILE VAL SER THR SER SEQRES 14 B 426 VAL ILE LEU GLY LEU PHE GLY LEU PHE SER SER SER ASN SEQRES 15 B 426 PRO LEU ILE ASP LEU ILE THR LEU ALA GLY GLY ALA ILE SEQRES 16 B 426 VAL VAL GLY LEU LEU LEU ALA LYS ILE TYR GLU LYS ILE SEQRES 17 B 426 ILE ILE HIS CYS ASP PHE HIS GLU TYR VAL ALA PRO LEU SEQRES 18 B 426 VAL LEU GLY GLY ALA MET LEU LEU LEU TYR VAL GLY ASP SEQRES 19 B 426 ASP LEU LEU PRO SER ILE CYS GLY TYR GLY PHE SER GLY SEQRES 20 B 426 TYR MET ALA VAL ALA ILE MET GLY LEU TYR LEU GLY ASP SEQRES 21 B 426 ALA LEU PHE ARG ALA ASP ASP ILE ASP TYR LYS TYR ILE SEQRES 22 B 426 VAL SER PHE CYS ASP ASP LEU SER LEU LEU ALA ARG VAL SEQRES 23 B 426 PHE ILE PHE VAL PHE LEU GLY ALA CYS ILE LYS LEU SER SEQRES 24 B 426 MET LEU GLU ASN TYR PHE ILE PRO GLY LEU LEU VAL ALA SEQRES 25 B 426 LEU GLY SER ILE PHE LEU ALA ARG PRO LEU GLY VAL PHE SEQRES 26 B 426 LEU GLY LEU ILE GLY SER LYS HIS SER PHE LYS GLU LYS SEQRES 27 B 426 LEU TYR PHE ALA LEU GLU GLY PRO ARG GLY VAL VAL PRO SEQRES 28 B 426 ALA ALA LEU ALA VAL THR VAL GLY ILE GLU ILE LEU LYS SEQRES 29 B 426 ASN ALA ASP LYS ILE PRO ALA SER ILE THR LYS TYR ILE SEQRES 30 B 426 THR PRO THR ASP ILE ALA GLY THR ILE ILE ILE GLY THR SEQRES 31 B 426 PHE MET THR ILE LEU LEU SER VAL ILE LEU GLU ALA SER SEQRES 32 B 426 TRP ALA GLY MET LEU ALA LEU LYS LEU LEU GLY GLU TYR SEQRES 33 B 426 LYS PRO LYS TYR LYS GLU GLU SER HIS HIS SEQRES 1 C 426 MET GLU LEU MET MET ALA ILE GLY TYR LEU GLY LEU ALA SEQRES 2 C 426 LEU VAL LEU GLY SER LEU VAL ALA LYS ILE ALA GLU LYS SEQRES 3 C 426 LEU LYS ILE PRO ASP ILE PRO LEU LEU LEU LEU LEU GLY SEQRES 4 C 426 LEU ILE ILE GLY PRO PHE LEU GLN ILE ILE PRO SER ASP SEQRES 5 C 426 SER ALA MET GLU ILE PHE GLU TYR ALA GLY PRO ILE GLY SEQRES 6 C 426 LEU ILE PHE ILE LEU LEU GLY GLY ALA PHE THR MET ARG SEQRES 7 C 426 ILE SER LEU LEU LYS ARG VAL ILE LYS THR VAL VAL ARG SEQRES 8 C 426 LEU ASP THR ILE THR PHE LEU ILE THR LEU LEU ILE SER SEQRES 9 C 426 GLY PHE ILE PHE ASN MET VAL LEU ASN LEU PRO TYR THR SEQRES 10 C 426 SER PRO VAL GLY TYR LEU PHE GLY ALA ILE THR ALA ALA SEQRES 11 C 426 THR ASP PRO ALA THR LEU ILE PRO VAL PHE SER ARG VAL SEQRES 12 C 426 ARG THR ASN PRO GLU VAL ALA ILE THR LEU GLU ALA GLU SEQRES 13 C 426 SER ILE PHE ASN ASP PRO LEU GLY ILE VAL SER THR SER SEQRES 14 C 426 VAL ILE LEU GLY LEU PHE GLY LEU PHE SER SER SER ASN SEQRES 15 C 426 PRO LEU ILE ASP LEU ILE THR LEU ALA GLY GLY ALA ILE SEQRES 16 C 426 VAL VAL GLY LEU LEU LEU ALA LYS ILE TYR GLU LYS ILE SEQRES 17 C 426 ILE ILE HIS CYS ASP PHE HIS GLU TYR VAL ALA PRO LEU SEQRES 18 C 426 VAL LEU GLY GLY ALA MET LEU LEU LEU TYR VAL GLY ASP SEQRES 19 C 426 ASP LEU LEU PRO SER ILE CYS GLY TYR GLY PHE SER GLY SEQRES 20 C 426 TYR MET ALA VAL ALA ILE MET GLY LEU TYR LEU GLY ASP SEQRES 21 C 426 ALA LEU PHE ARG ALA ASP ASP ILE ASP TYR LYS TYR ILE SEQRES 22 C 426 VAL SER PHE CYS ASP ASP LEU SER LEU LEU ALA ARG VAL SEQRES 23 C 426 PHE ILE PHE VAL PHE LEU GLY ALA CYS ILE LYS LEU SER SEQRES 24 C 426 MET LEU GLU ASN TYR PHE ILE PRO GLY LEU LEU VAL ALA SEQRES 25 C 426 LEU GLY SER ILE PHE LEU ALA ARG PRO LEU GLY VAL PHE SEQRES 26 C 426 LEU GLY LEU ILE GLY SER LYS HIS SER PHE LYS GLU LYS SEQRES 27 C 426 LEU TYR PHE ALA LEU GLU GLY PRO ARG GLY VAL VAL PRO SEQRES 28 C 426 ALA ALA LEU ALA VAL THR VAL GLY ILE GLU ILE LEU LYS SEQRES 29 C 426 ASN ALA GLU LYS ILE PRO ALA SER ILE THR LYS TYR ILE SEQRES 30 C 426 THR PRO THR ASP ILE ALA GLY THR ILE ILE ILE GLY THR SEQRES 31 C 426 PHE MET THR ILE LEU LEU SER VAL ILE LEU GLU ALA SER SEQRES 32 C 426 TRP ALA GLY MET LEU ALA LEU LYS LEU LEU GLY GLU TYR SEQRES 33 C 426 LYS PRO LYS TYR LYS GLU GLU SER HIS HIS SEQRES 1 D 426 MET GLU LEU MET MET ALA ILE GLY TYR LEU GLY LEU ALA SEQRES 2 D 426 LEU VAL LEU GLY SER LEU VAL ALA LYS ILE ALA GLU LYS SEQRES 3 D 426 LEU LYS ILE PRO ASP ILE PRO LEU LEU LEU LEU LEU GLY SEQRES 4 D 426 LEU ILE ILE GLY PRO PHE LEU GLN ILE ILE PRO SER ASP SEQRES 5 D 426 SER ALA MET GLU ILE PHE GLU TYR ALA GLY PRO ILE GLY SEQRES 6 D 426 LEU ILE PHE ILE LEU LEU GLY GLY ALA PHE THR MET ARG SEQRES 7 D 426 ILE SER LEU LEU LYS ARG VAL ILE LYS THR VAL VAL ARG SEQRES 8 D 426 LEU ASP THR ILE THR PHE LEU ILE THR LEU LEU ILE SER SEQRES 9 D 426 GLY PHE ILE PHE ASN MET VAL LEU ASN LEU PRO TYR THR SEQRES 10 D 426 SER PRO VAL GLY TYR LEU PHE GLY ALA ILE THR ALA ALA SEQRES 11 D 426 THR ASP PRO ALA THR LEU ILE PRO VAL PHE SER ARG VAL SEQRES 12 D 426 ARG THR ASN PRO GLU VAL ALA ILE THR LEU GLU ALA GLU SEQRES 13 D 426 SER ILE PHE ASN ASP PRO LEU GLY ILE VAL SER THR SER SEQRES 14 D 426 VAL ILE LEU GLY LEU PHE GLY LEU PHE SER SER SER ASN SEQRES 15 D 426 PRO LEU ILE ASP LEU ILE THR LEU ALA GLY GLY ALA ILE SEQRES 16 D 426 VAL VAL GLY LEU LEU LEU ALA LYS ILE TYR GLU LYS ILE SEQRES 17 D 426 ILE ILE HIS CYS ASP PHE HIS GLU TYR VAL ALA PRO LEU SEQRES 18 D 426 VAL LEU GLY GLY ALA MET LEU LEU LEU TYR VAL GLY ASP SEQRES 19 D 426 ASP LEU LEU PRO SER ILE CYS GLY TYR GLY PHE SER GLY SEQRES 20 D 426 TYR MET ALA VAL ALA ILE MET GLY LEU TYR LEU GLY ASP SEQRES 21 D 426 ALA LEU PHE ARG ALA ASP ASP ILE ASP TYR LYS TYR ILE SEQRES 22 D 426 VAL SER PHE CYS ASP ASP LEU SER LEU LEU ALA ARG VAL SEQRES 23 D 426 PHE ILE PHE VAL PHE LEU GLY ALA CYS ILE LYS LEU SER SEQRES 24 D 426 MET LEU GLU ASN TYR PHE ILE PRO GLY LEU LEU VAL ALA SEQRES 25 D 426 LEU GLY SER ILE PHE LEU ALA ARG PRO LEU GLY VAL PHE SEQRES 26 D 426 LEU GLY LEU ILE GLY SER LYS HIS SER PHE LYS GLU LYS SEQRES 27 D 426 LEU TYR PHE ALA LEU GLU GLY PRO ARG GLY VAL VAL PRO SEQRES 28 D 426 ALA ALA LEU ALA VAL THR VAL GLY ILE GLU ILE LEU LYS SEQRES 29 D 426 ASN ALA ASP LYS ILE PRO ALA SER ILE THR LYS TYR ILE SEQRES 30 D 426 THR PRO THR ASP ILE ALA GLY THR ILE ILE ILE GLY THR SEQRES 31 D 426 PHE MET THR ILE LEU LEU SER VAL ILE LEU GLU ALA SER SEQRES 32 D 426 TRP ALA GLY MET LEU ALA LEU LYS LEU LEU GLY GLU TYR SEQRES 33 D 426 LYS PRO LYS TYR LYS GLU GLU SER HIS HIS HET K A1416 1 HET TAM B1420 11 HET K C1405 1 HETNAM K POTASSIUM ION HETNAM TAM TRIS(HYDROXYETHYL)AMINOMETHANE FORMUL 5 K 2(K 1+) FORMUL 6 TAM C7 H17 N O3 HELIX 1 1 MET A 1 LEU A 27 1 27 HELIX 2 2 ASP A 31 GLY A 43 1 13 HELIX 3 3 PRO A 50 MET A 77 1 28 HELIX 4 4 LEU A 81 ARG A 84 5 4 HELIX 5 5 VAL A 85 THR A 94 1 10 HELIX 6 6 THR A 94 LEU A 112 1 19 HELIX 7 7 SER A 118 ALA A 129 1 12 HELIX 8 8 LEU A 136 SER A 141 1 6 HELIX 9 9 ASN A 146 PHE A 175 1 30 HELIX 10 10 ASN A 182 CYS A 212 1 31 HELIX 11 11 PHE A 214 GLU A 216 5 3 HELIX 12 12 TYR A 217 ASP A 234 1 18 HELIX 13 13 ASP A 235 CYS A 241 1 7 HELIX 14 14 GLY A 247 ALA A 265 1 19 HELIX 15 15 ILE A 268 ILE A 296 1 29 HELIX 16 16 LYS A 297 LEU A 328 1 32 HELIX 17 17 SER A 334 GLU A 344 1 11 HELIX 18 18 GLY A 348 ASN A 365 1 18 HELIX 19 19 THR A 378 LYS A 411 1 34 HELIX 20 20 GLU B 2 LEU B 27 1 26 HELIX 21 21 PRO B 30 GLY B 43 1 14 HELIX 22 22 PRO B 50 THR B 76 1 27 HELIX 23 23 VAL B 85 LEU B 112 1 28 HELIX 24 24 SER B 118 ALA B 129 1 12 HELIX 25 25 ASP B 132 ARG B 142 1 11 HELIX 26 26 ASN B 146 GLY B 173 1 28 HELIX 27 27 LEU B 174 GLY B 176 5 3 HELIX 28 28 ASN B 182 HIS B 211 1 30 HELIX 29 29 PHE B 214 GLU B 216 5 3 HELIX 30 30 TYR B 217 ASP B 234 1 18 HELIX 31 31 ASP B 235 GLY B 242 1 8 HELIX 32 32 SER B 246 ALA B 265 1 20 HELIX 33 33 ASP B 269 CYS B 295 1 27 HELIX 34 34 LYS B 297 TYR B 304 1 8 HELIX 35 35 TYR B 304 LEU B 318 1 15 HELIX 36 36 LEU B 318 LEU B 328 1 11 HELIX 37 37 SER B 334 LEU B 343 1 10 HELIX 38 38 GLY B 348 ALA B 366 1 19 HELIX 39 39 ALA B 371 TYR B 376 1 6 HELIX 40 40 THR B 378 LEU B 413 1 36 HELIX 41 41 GLU C 2 LEU C 27 1 26 HELIX 42 42 ASP C 31 ILE C 42 1 12 HELIX 43 43 PRO C 50 PHE C 75 1 26 HELIX 44 44 VAL C 85 LEU C 112 1 28 HELIX 45 45 PRO C 119 ALA C 129 1 11 HELIX 46 46 ASP C 132 SER C 141 1 10 HELIX 47 47 ASN C 146 PHE C 175 1 30 HELIX 48 48 ASN C 182 ILE C 208 1 27 HELIX 49 49 TYR C 217 ASP C 234 1 18 HELIX 50 50 ASP C 235 CYS C 241 1 7 HELIX 51 51 SER C 246 ASP C 266 1 21 HELIX 52 52 ILE C 268 ILE C 296 1 29 HELIX 53 53 LYS C 297 LEU C 328 1 32 HELIX 54 54 SER C 334 GLY C 345 1 12 HELIX 55 55 GLY C 348 ALA C 366 1 19 HELIX 56 56 THR C 378 ALA C 402 1 25 HELIX 57 57 GLU D 2 LEU D 27 1 26 HELIX 58 58 PRO D 30 GLY D 43 1 14 HELIX 59 59 PRO D 50 THR D 76 1 27 HELIX 60 60 LEU D 81 ARG D 84 5 4 HELIX 61 61 VAL D 85 LEU D 112 1 28 HELIX 62 62 SER D 118 THR D 128 1 11 HELIX 63 63 ASP D 132 ALA D 134 5 3 HELIX 64 64 THR D 135 VAL D 143 1 9 HELIX 65 65 ASN D 146 LEU D 174 1 29 HELIX 66 66 ASN D 182 CYS D 212 1 31 HELIX 67 67 TYR D 217 ASP D 235 1 19 HELIX 68 68 ASP D 235 CYS D 241 1 7 HELIX 69 69 SER D 246 ALA D 265 1 20 HELIX 70 70 ASP D 267 ALA D 294 1 28 HELIX 71 71 LYS D 297 LEU D 328 1 32 HELIX 72 72 SER D 334 GLU D 344 1 11 HELIX 73 73 GLY D 348 LYS D 364 1 17 HELIX 74 74 ILE D 373 ILE D 377 5 5 HELIX 75 75 THR D 378 GLY D 414 1 37 LINK O ILE A 209 K K A1416 1555 1555 2.86 LINK O ILE A 210 K K A1416 1555 1555 2.80 LINK O CYS A 212 K K A1416 1555 1555 2.92 LINK OD1 ASP A 267 K K A1416 1555 1555 2.81 LINK OD2 ASP A 267 K K A1416 1555 1555 2.94 LINK OD2 ASP A 269 K K A1416 1555 1555 2.99 LINK O ILE C 209 K K C1405 1555 1555 2.85 LINK O ILE C 210 K K C1405 1555 1555 3.35 LINK O CYS C 212 K K C1405 1555 1555 2.67 LINK OD1 ASP C 267 K K C1405 1555 1555 2.69 LINK OD2 ASP C 267 K K C1405 1555 1555 2.79 LINK OD2 ASP C 269 K K C1405 1555 1555 2.94 SITE 1 AC1 2 LYS B 28 ALA B 402 SITE 1 AC2 5 ILE C 209 ILE C 210 CYS C 212 ASP C 267 SITE 2 AC2 5 ASP C 269 SITE 1 AC3 6 ILE A 209 ILE A 210 CYS A 212 ASP A 213 SITE 2 AC3 6 ASP A 267 ASP A 269 CRYST1 98.437 102.544 132.096 90.00 105.63 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010159 0.000000 0.002842 0.00000 SCALE2 0.000000 0.009752 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007861 0.00000