HEADER OXIDOREDUCTASE 21-APR-14 4CZN TITLE CRYSTAL STRUCTURE OF THE EXTRALONG FUNGAL MANGANESE PEROXIDASE FROM TITLE 2 CERIPORIOPSIS SUBVERMISPORA COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXTRALONG MANGANESE PEROXIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.11.1.13; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CERIPORIOPSIS SUBVERMISPORA; SOURCE 3 ORGANISM_TAXID: 42742; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 316407; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: K-12 SUBSTR. W3110; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PFLAG1-CSMNP6 KEYWDS CLASS II (FUNGAL) PEROXIDASES, PROTOPORPHYRIN IX, ELECTRON TRANSFER, KEYWDS 2 LIGNIN PEROXIDASE, LIGNIN DEGRADATION, MANGANESE PEROXIDASE, MNII KEYWDS 3 OXIDATION, PEROXIDASE, OXIDOREDUCTASE, HYDROGEN PEROXIDE, METAL- KEYWDS 4 BINDING, SECRETED EXPDTA X-RAY DIFFRACTION AUTHOR F.J.MEDRANO,A.ROMERO REVDAT 3 20-DEC-23 4CZN 1 REMARK LINK REVDAT 2 17-DEC-14 4CZN 1 JRNL REVDAT 1 10-DEC-14 4CZN 0 JRNL AUTH E.FERNANDEZ-FUEYO,S.ACEBES,F.J.RUIZ-DUENAS,M.J.MARTINEZ, JRNL AUTH 2 A.ROMERO,F.J.MEDRANO,V.GUALLAR,A.T.MARTINEZ JRNL TITL STRUCTURAL IMPLICATIONS OF THE C-TERMINAL TAIL IN THE JRNL TITL 2 CATALYTIC AND STABILITY PROPERTIES OF MANGANESE PEROXIDASES JRNL TITL 3 FROM LIGNINOLYTIC FUNGI JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 70 3253 2014 JRNL REFN ISSN 0907-4449 JRNL PMID 25478843 JRNL DOI 10.1107/S1399004714022755 REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 127105 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.135 REMARK 3 R VALUE (WORKING SET) : 0.134 REMARK 3 FREE R VALUE : 0.151 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6362 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.6530 - 3.7255 1.00 4383 231 0.1491 0.1565 REMARK 3 2 3.7255 - 2.9573 1.00 4201 220 0.1356 0.1540 REMARK 3 3 2.9573 - 2.5835 1.00 4125 217 0.1292 0.1264 REMARK 3 4 2.5835 - 2.3473 1.00 4133 219 0.1200 0.1246 REMARK 3 5 2.3473 - 2.1791 1.00 4087 215 0.1109 0.1207 REMARK 3 6 2.1791 - 2.0506 1.00 4094 215 0.1134 0.1275 REMARK 3 7 2.0506 - 1.9479 1.00 4061 214 0.1115 0.1241 REMARK 3 8 1.9479 - 1.8631 1.00 4063 214 0.1127 0.1242 REMARK 3 9 1.8631 - 1.7914 1.00 4076 213 0.1121 0.1361 REMARK 3 10 1.7914 - 1.7296 1.00 4041 213 0.1122 0.1440 REMARK 3 11 1.7296 - 1.6755 1.00 4022 212 0.1090 0.1557 REMARK 3 12 1.6755 - 1.6276 1.00 4037 214 0.1069 0.1496 REMARK 3 13 1.6276 - 1.5848 1.00 4035 210 0.1058 0.1330 REMARK 3 14 1.5848 - 1.5461 1.00 4025 212 0.1074 0.1346 REMARK 3 15 1.5461 - 1.5109 0.99 4000 211 0.1055 0.1362 REMARK 3 16 1.5109 - 1.4788 0.99 4009 212 0.1115 0.1214 REMARK 3 17 1.4788 - 1.4492 0.99 3999 211 0.1230 0.1517 REMARK 3 18 1.4492 - 1.4219 0.99 4015 212 0.1325 0.1564 REMARK 3 19 1.4219 - 1.3965 0.99 3960 210 0.1463 0.1834 REMARK 3 20 1.3965 - 1.3728 0.99 3999 209 0.1493 0.1769 REMARK 3 21 1.3728 - 1.3506 0.99 3978 211 0.1629 0.1801 REMARK 3 22 1.3506 - 1.3299 0.99 3993 209 0.1777 0.2081 REMARK 3 23 1.3299 - 1.3103 0.98 3945 207 0.1869 0.2181 REMARK 3 24 1.3103 - 1.2918 0.98 3961 210 0.1881 0.2048 REMARK 3 25 1.2918 - 1.2744 0.99 3934 208 0.2074 0.2343 REMARK 3 26 1.2744 - 1.2578 0.98 3959 210 0.2126 0.2332 REMARK 3 27 1.2578 - 1.2421 0.98 3972 209 0.2313 0.2473 REMARK 3 28 1.2421 - 1.2271 0.98 3915 205 0.2374 0.2643 REMARK 3 29 1.2271 - 1.2129 0.98 3924 205 0.2451 0.2398 REMARK 3 30 1.2129 - 1.1992 0.95 3797 204 0.2717 0.2679 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.05 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2819 REMARK 3 ANGLE : 1.244 3859 REMARK 3 CHIRALITY : 0.073 438 REMARK 3 PLANARITY : 0.007 516 REMARK 3 DIHEDRAL : 12.299 988 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4CZN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-APR-14. REMARK 100 THE DEPOSITION ID IS D_1290060409. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933400 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 128076 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 8.60 REMARK 200 R MERGE FOR SHELL (I) : 1.20000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.020 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3M5Q REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 4000, 100MM NA-ACETATE PH 4.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.42500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 54.28000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 54.28000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.63750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 54.28000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 54.28000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 17.21250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 54.28000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.28000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 51.63750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 54.28000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.28000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 17.21250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 34.42500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2152 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2200 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2438 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -3 REMARK 465 ALA A -2 REMARK 465 PRO A 365 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 8 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2100 O HOH A 2595 2.09 REMARK 500 O HOH A 2411 O HOH A 2412 2.10 REMARK 500 O HOH A 2259 O HOH A 2531 2.13 REMARK 500 O HOH A 2032 O HOH A 2153 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 28 -60.40 -132.55 REMARK 500 VAL A 73 -84.47 -111.03 REMARK 500 THR A 133 -166.19 -163.23 REMARK 500 THR A 313 -0.11 76.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2014 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH A2040 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH A2058 DISTANCE = 6.72 ANGSTROMS REMARK 525 HOH A2066 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH A2067 DISTANCE = 6.36 ANGSTROMS REMARK 525 HOH A2075 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH A2092 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH A2186 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH A2187 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A2207 DISTANCE = 6.80 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1371 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 35 OE2 REMARK 620 2 ASP A 179 OD2 94.7 REMARK 620 3 HEM A1372 O1D 96.7 159.8 REMARK 620 4 HOH A2097 O 86.4 79.1 118.1 REMARK 620 5 HOH A2352 O 178.3 86.6 81.8 94.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1370 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 47 O REMARK 620 2 ASP A 47 OD1 81.6 REMARK 620 3 GLY A 62 O 68.1 96.6 REMARK 620 4 ASP A 64 OD1 133.9 85.0 69.9 REMARK 620 5 SER A 66 OG 146.8 89.5 145.0 76.4 REMARK 620 6 HOH A2114 O 73.4 90.7 139.2 150.9 74.7 REMARK 620 7 HOH A2122 O 102.6 172.5 90.7 96.2 83.6 84.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A1372 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 173 NE2 REMARK 620 2 HEM A1372 NA 94.4 REMARK 620 3 HEM A1372 NB 93.3 89.6 REMARK 620 4 HEM A1372 NC 96.7 168.9 89.6 REMARK 620 5 HEM A1372 ND 97.3 89.1 169.4 89.6 REMARK 620 6 HOH A2103 O 177.6 85.5 84.3 83.4 85.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1369 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 174 O REMARK 620 2 THR A 174 OG1 73.5 REMARK 620 3 ASP A 191 OD2 93.0 77.2 REMARK 620 4 ASP A 191 OD1 78.1 118.3 50.7 REMARK 620 5 THR A 193 OG1 146.0 140.2 91.7 79.0 REMARK 620 6 THR A 193 O 80.9 146.8 125.7 75.4 69.1 REMARK 620 7 THR A 196 O 84.2 79.3 156.1 149.5 103.8 77.4 REMARK 620 8 ASP A 198 OD1 141.1 68.9 88.2 129.0 72.7 128.4 79.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1369 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1370 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1371 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 1372 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CZO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE EXTRALONG FUNGAL MANGANESE PEROXIDASE FROM REMARK 900 CERIPORIOPSIS SUBVERMISPORA IN COMPLEX WITH MANGANESE REMARK 900 RELATED ID: 4CZP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE EXTRALONG FUNGAL MANGANESE PEROXIDASE FROM REMARK 900 CERIPORIOPSIS SUBVERMISPORA IN COMPLEX WITH MANGANESE (ANOMALOUS REMARK 900 DATA) REMARK 900 RELATED ID: 4CZQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE EXTRALONG FUNGAL MANGANESE PEROXIDASE FROM REMARK 900 CERIPORIOPSIS SUBVERMISPORA IN COMPLEX WITH CADMIUM REMARK 900 RELATED ID: 4CZR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE EXTRALONG FUNGAL MANGANESE PEROXIDASE FROM REMARK 900 CERIPORIOPSIS SUBVERMISPORA IN COMPLEX WITH CADMIUM (ANOMALOUS DATA) DBREF 4CZN A -3 365 PDB 4CZN 4CZN -3 365 SEQRES 1 A 369 MET ALA PRO THR ALA VAL CYS SER ASP GLY THR ARG VAL SEQRES 2 A 369 SER ASN ALA VAL CYS CYS ASP PHE VAL SER LEU GLY GLN SEQRES 3 A 369 ASP LEU GLN SER MET VAL LEU GLN GLY ASP CYS GLY GLU SEQRES 4 A 369 ASP ALA HIS GLU ILE ILE ARG LEU THR PHE HIS ASP ALA SEQRES 5 A 369 VAL ALA ILE SER ARG LYS LEU GLY PRO SER ALA GLY GLY SEQRES 6 A 369 GLY ALA ASP GLY SER MET LEU LEU PHE PRO LEU VAL GLU SEQRES 7 A 369 PRO GLU PHE ALA ALA SER ASN GLY ILE ASP ASP SER VAL SEQRES 8 A 369 ASN ASN LEU ILE PRO PHE LEU SER LEU HIS PRO THR ILE SEQRES 9 A 369 SER ALA GLY ASP LEU VAL GLN PHE ALA GLY ALA VAL ALA SEQRES 10 A 369 LEU SER ASN CYS PRO GLY ALA PRO ARG VAL GLN PHE LEU SEQRES 11 A 369 ALA GLY ARG PRO ASN HIS THR ILE ALA ALA ILE ASP GLY SEQRES 12 A 369 LEU ILE PRO GLU PRO GLN ASP ASN VAL THR SER ILE LEU SEQRES 13 A 369 GLU ARG PHE ASP ASP ALA GLY GLY PHE THR PRO PHE GLU SEQRES 14 A 369 VAL VAL SER LEU LEU ALA SER HIS THR ILE ALA ARG ALA SEQRES 15 A 369 ASP LYS VAL ASP PRO THR LEU ASP ALA ALA PRO PHE ASP SEQRES 16 A 369 THR THR PRO PHE THR PHE ASP SER GLN ILE PHE LEU GLU SEQRES 17 A 369 VAL LEU LEU LYS GLY VAL GLY PHE PRO GLY LEU ASP ASN SEQRES 18 A 369 ASN THR GLY GLU VAL SER SER PRO LEU PRO LEU GLY ASP SEQRES 19 A 369 THR SER THR GLY GLY LYS ASP THR GLY LEU MET ARG LEU SEQRES 20 A 369 GLN SER ASP PHE ALA LEU ALA HIS ASP PRO ARG THR ALA SEQRES 21 A 369 CYS PHE TRP GLN GLY PHE VAL ASP GLN GLN GLU PHE MET SEQRES 22 A 369 SER GLN SER PHE ALA SER ALA PHE ALA LYS LEU ALA VAL SEQRES 23 A 369 LEU GLY HIS ASN THR ASP ASP LEU ILE ASP CYS SER GLU SEQRES 24 A 369 VAL VAL PRO VAL PRO LYS PRO ALA VAL ASP LYS PRO THR SEQRES 25 A 369 THR PHE PRO ALA THR THR GLY PRO GLN ASP LEU GLU LEU SEQRES 26 A 369 SER CYS LEU ALA GLU ARG PHE PRO THR LEU SER VAL ASP SEQRES 27 A 369 PRO GLY ALA GLN GLU THR LEU ILE PRO HIS CYS SER ASP SEQRES 28 A 369 GLY LEU GLU ASN CYS THR SER VAL GLN PHE SER GLY PRO SEQRES 29 A 369 ALA THR ASP SER PRO HET CA A1369 1 HET CA A1370 1 HET NA A1371 1 HET HEM A1372 73 HETNAM CA CALCIUM ION HETNAM NA SODIUM ION HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 2 CA 2(CA 2+) FORMUL 4 NA NA 1+ FORMUL 5 HEM C34 H32 FE N4 O4 FORMUL 6 HOH *595(H2 O) HELIX 1 1 ASN A 11 CYS A 14 5 4 HELIX 2 2 CYS A 15 VAL A 28 1 14 HELIX 3 3 GLY A 34 VAL A 49 1 16 HELIX 4 4 GLY A 56 GLY A 60 5 5 HELIX 5 5 GLY A 65 PHE A 70 1 6 HELIX 6 6 VAL A 73 PHE A 77 5 5 HELIX 7 7 PHE A 77 ASN A 81 5 5 HELIX 8 8 ILE A 83 HIS A 97 1 15 HELIX 9 9 SER A 101 ASN A 116 1 16 HELIX 10 10 ASN A 147 GLY A 160 1 14 HELIX 11 11 THR A 162 LEU A 170 1 9 HELIX 12 12 ALA A 171 ILE A 175 5 5 HELIX 13 13 SER A 199 LEU A 206 1 8 HELIX 14 14 ASP A 230 GLY A 234 5 5 HELIX 15 15 GLN A 244 ASP A 252 1 9 HELIX 16 16 THR A 255 PHE A 262 1 8 HELIX 17 17 GLN A 265 VAL A 282 1 18 HELIX 18 18 ASN A 286 LEU A 290 5 5 HELIX 19 19 SER A 294 VAL A 297 5 4 HELIX 20 20 GLY A 315 ASP A 318 5 4 SHEET 1 AA 2 ALA A 1 VAL A 2 0 SHEET 2 AA 2 ARG A 8 VAL A 9 -1 O VAL A 9 N ALA A 1 SHEET 1 AB 2 LEU A 126 ALA A 127 0 SHEET 2 AB 2 ILE A 291 ASP A 292 -1 O ILE A 291 N ALA A 127 SHEET 1 AC 2 ARG A 177 ALA A 178 0 SHEET 2 AC 2 ALA A 188 PRO A 189 -1 O ALA A 188 N ALA A 178 SHEET 1 AD 2 GLU A 221 VAL A 222 0 SHEET 2 AD 2 ARG A 242 LEU A 243 -1 O ARG A 242 N VAL A 222 SSBOND 1 CYS A 3 CYS A 15 1555 1555 2.05 SSBOND 2 CYS A 14 CYS A 293 1555 1555 2.03 SSBOND 3 CYS A 33 CYS A 117 1555 1555 2.03 SSBOND 4 CYS A 257 CYS A 323 1555 1555 2.04 SSBOND 5 CYS A 345 CYS A 352 1555 1555 2.04 LINK OE2 GLU A 35 NA NA A1371 1555 1555 2.40 LINK O ASP A 47 CA CA A1370 1555 1555 2.42 LINK OD1 ASP A 47 CA CA A1370 1555 1555 2.32 LINK O GLY A 62 CA CA A1370 1555 1555 2.43 LINK OD1 ASP A 64 CA CA A1370 1555 1555 2.42 LINK OG SER A 66 CA CA A1370 1555 1555 2.49 LINK NE2 HIS A 173 FE HEM A1372 1555 1555 2.15 LINK O THR A 174 CA CA A1369 1555 1555 2.36 LINK OG1 THR A 174 CA CA A1369 1555 1555 2.46 LINK OD2 ASP A 179 NA NA A1371 1555 1555 2.44 LINK OD2 ASP A 191 CA CA A1369 1555 1555 2.43 LINK OD1 ASP A 191 CA CA A1369 1555 1555 2.69 LINK OG1 THR A 193 CA CA A1369 1555 1555 2.48 LINK O THR A 193 CA CA A1369 1555 1555 2.37 LINK O THR A 196 CA CA A1369 1555 1555 2.53 LINK OD1 ASP A 198 CA CA A1369 1555 1555 2.47 LINK CA CA A1370 O HOH A2114 1555 1555 2.42 LINK CA CA A1370 O HOH A2122 1555 1555 2.32 LINK NA NA A1371 O1D HEM A1372 1555 1555 2.23 LINK NA NA A1371 O HOH A2097 1555 1555 2.32 LINK NA NA A1371 O HOH A2352 1555 1555 2.36 LINK FE HEM A1372 O HOH A2103 1555 1555 2.18 SITE 1 AC1 5 THR A 174 ASP A 191 THR A 193 THR A 196 SITE 2 AC1 5 ASP A 198 SITE 1 AC2 6 ASP A 47 GLY A 62 ASP A 64 SER A 66 SITE 2 AC2 6 HOH A2114 HOH A2122 SITE 1 AC3 5 GLU A 35 ASP A 179 HEM A1372 HOH A2097 SITE 2 AC3 5 HOH A2352 SITE 1 AC4 23 GLU A 35 HIS A 38 GLU A 39 ARG A 42 SITE 2 AC4 23 PHE A 45 GLU A 143 PRO A 144 LEU A 170 SITE 3 AC4 23 SER A 172 HIS A 173 ALA A 176 ARG A 177 SITE 4 AC4 23 ALA A 178 ASP A 179 LYS A 180 VAL A 181 SITE 5 AC4 23 SER A 245 NA A1371 HOH A2096 HOH A2103 SITE 6 AC4 23 HOH A2352 HOH A2593 HOH A2594 CRYST1 108.560 108.560 68.850 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009211 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009211 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014524 0.00000