HEADER OXIDOREDUCTASE 21-APR-14 4CZQ TITLE CRYSTAL STRUCTURE OF THE EXTRALONG FUNGAL MANGANESE PEROXIDASE FROM TITLE 2 CERIPORIOPSIS SUBVERMISPORA IN COMPLEX WITH CADMIUM CAVEAT 4CZQ LEU A 228 C-ALPHA IS PLANAR COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXTRALONG MANGANESE PEROXIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.11.1.13; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CERIPORIOPSIS SUBVERMISPORA; SOURCE 3 ORGANISM_TAXID: 42742; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 316407; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: K-12 SUBSTR. W3110; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PFLAG1-CSMNP6 KEYWDS CLASS II (FUNGAL) PEROXIDASES, PROTOPORPHYRIN IX, ELECTRON T LIGNIN KEYWDS 2 PEROXIDASE, LIGNIN DEGRADATION, MANGANESE PEROXIDASE, OXIDATION, KEYWDS 3 PEROXIDASE, OXIDOREDUCTASE, HYDROGEN PEROXIDE, METAL-BINDING, KEYWDS 4 SECRETED EXPDTA X-RAY DIFFRACTION AUTHOR F.J.MEDRANO,A.ROMERO REVDAT 3 20-DEC-23 4CZQ 1 REMARK LINK REVDAT 2 17-DEC-14 4CZQ 1 JRNL REVDAT 1 10-DEC-14 4CZQ 0 JRNL AUTH E.FERNANDEZ-FUEYO,S.ACEBES,F.J.RUIZ-DUENAS,M.J.MARTINEZ, JRNL AUTH 2 A.ROMERO,F.J.MEDRANO,V.GUALLAR,A.T.MARTINEZ JRNL TITL STRUCTURAL IMPLICATIONS OF THE C-TERMINAL TAIL IN THE JRNL TITL 2 CATALYTIC AND STABILITY PROPERTIES OF MANGANESE PEROXIDASES JRNL TITL 3 FROM LIGNINOLYTIC FUNGI JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 70 3253 2014 JRNL REFN ISSN 0907-4449 JRNL PMID 25478843 JRNL DOI 10.1107/S1399004714022755 REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 127474 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.162 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6374 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.3628 - 3.7223 1.00 4367 231 0.1691 0.1698 REMARK 3 2 3.7223 - 2.9550 1.00 4176 218 0.1613 0.1596 REMARK 3 3 2.9550 - 2.5816 1.00 4115 218 0.1593 0.1788 REMARK 3 4 2.5816 - 2.3457 1.00 4117 216 0.1445 0.1642 REMARK 3 5 2.3457 - 2.1776 1.00 4066 214 0.1356 0.1272 REMARK 3 6 2.1776 - 2.0492 1.00 4069 214 0.1355 0.1381 REMARK 3 7 2.0492 - 1.9466 1.00 4052 214 0.1351 0.1419 REMARK 3 8 1.9466 - 1.8619 1.00 4077 215 0.1353 0.1432 REMARK 3 9 1.8619 - 1.7902 1.00 4046 213 0.1321 0.1534 REMARK 3 10 1.7902 - 1.7284 1.00 4029 212 0.1267 0.1511 REMARK 3 11 1.7284 - 1.6744 1.00 4035 211 0.1196 0.1400 REMARK 3 12 1.6744 - 1.6265 1.00 4021 212 0.1155 0.1319 REMARK 3 13 1.6265 - 1.5837 1.00 4021 212 0.1156 0.1458 REMARK 3 14 1.5837 - 1.5450 1.00 4040 213 0.1149 0.1341 REMARK 3 15 1.5450 - 1.5099 1.00 4002 211 0.1142 0.1435 REMARK 3 16 1.5099 - 1.4778 1.00 4002 209 0.1156 0.1381 REMARK 3 17 1.4778 - 1.4482 1.00 4016 212 0.1215 0.1408 REMARK 3 18 1.4482 - 1.4209 1.00 4033 213 0.1213 0.1658 REMARK 3 19 1.4209 - 1.3955 1.00 3987 209 0.1368 0.1593 REMARK 3 20 1.3955 - 1.3719 1.00 4014 212 0.1458 0.1794 REMARK 3 21 1.3719 - 1.3497 1.00 4005 211 0.1554 0.1942 REMARK 3 22 1.3497 - 1.3290 1.00 4030 212 0.1632 0.1771 REMARK 3 23 1.3290 - 1.3094 1.00 3955 208 0.1725 0.1727 REMARK 3 24 1.3094 - 1.2910 1.00 4013 211 0.1808 0.2300 REMARK 3 25 1.2910 - 1.2735 1.00 3990 209 0.2028 0.2582 REMARK 3 26 1.2735 - 1.2570 1.00 4011 212 0.2117 0.2272 REMARK 3 27 1.2570 - 1.2413 1.00 3997 210 0.2302 0.2663 REMARK 3 28 1.2413 - 1.2263 1.00 3990 211 0.2530 0.2727 REMARK 3 29 1.2263 - 1.2121 1.00 3973 209 0.2726 0.2868 REMARK 3 30 1.2121 - 1.1984 0.96 3851 202 0.3113 0.3428 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.13 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2839 REMARK 3 ANGLE : 1.379 3888 REMARK 3 CHIRALITY : 0.164 444 REMARK 3 PLANARITY : 0.010 518 REMARK 3 DIHEDRAL : 12.980 996 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4CZQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-APR-14. REMARK 100 THE DEPOSITION ID IS D_1290060415. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.980110 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 128714 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 1.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 0.1900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 1.29000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3MQ5 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 4000, 100MM NA-ACETATE PH 4.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.16000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 54.31000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 54.31000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.24000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 54.31000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 54.31000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 17.08000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 54.31000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.31000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 51.24000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 54.31000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.31000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 17.08000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 34.16000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -3 REMARK 465 ALA A -2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 8 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 295 O HOH A 2356 1.83 REMARK 500 O HOH A 2036 O HOH A 2180 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2323 O HOH A 2387 7556 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 365 C - N - CD ANGL. DEV. = -17.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 28 -59.91 -131.85 REMARK 500 VAL A 73 -83.15 -111.56 REMARK 500 THR A 133 -168.05 -162.22 REMARK 500 THR A 313 -0.56 80.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 364 PRO A 365 116.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2023 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH A2039 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH A2040 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH A2048 DISTANCE = 6.79 ANGSTROMS REMARK 525 HOH A2062 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH A2088 DISTANCE = 6.99 ANGSTROMS REMARK 525 HOH A2445 DISTANCE = 5.90 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1373 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 35 OE2 REMARK 620 2 GLU A 39 OE2 90.4 REMARK 620 3 ASP A 179 OD2 96.5 89.9 REMARK 620 4 HEM A1372 O1D 93.6 88.0 169.6 REMARK 620 5 HOH A2068 O 86.9 173.3 84.3 98.3 REMARK 620 6 HOH A2075 O 176.3 90.4 87.2 82.7 92.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1371 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 47 O REMARK 620 2 ASP A 47 OD1 82.4 REMARK 620 3 GLY A 62 O 68.8 97.1 REMARK 620 4 ASP A 64 OD1 135.3 84.6 70.7 REMARK 620 5 SER A 66 OG 145.9 89.4 145.3 76.1 REMARK 620 6 HOH A2086 O 72.8 90.9 139.2 150.1 74.3 REMARK 620 7 HOH A2095 O 101.4 172.9 89.9 96.6 84.1 84.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1374 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 85 OD2 REMARK 620 2 HOH A2070 O 92.4 REMARK 620 3 HOH A2076 O 81.0 79.4 REMARK 620 4 HOH A2151 O 96.4 167.1 92.7 REMARK 620 5 HOH A2262 O 170.6 87.8 108.2 85.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A1372 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 173 NE2 REMARK 620 2 HEM A1372 NA 96.4 REMARK 620 3 HEM A1372 NB 96.7 88.8 REMARK 620 4 HEM A1372 NC 101.5 162.0 89.4 REMARK 620 5 HEM A1372 ND 101.0 87.8 162.2 88.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1370 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 174 O REMARK 620 2 THR A 174 OG1 74.0 REMARK 620 3 ASP A 191 OD1 77.6 118.7 REMARK 620 4 ASP A 191 OD2 92.0 77.3 50.6 REMARK 620 5 THR A 193 O 80.8 146.9 75.1 125.4 REMARK 620 6 THR A 193 OG1 145.8 139.8 78.7 91.7 69.4 REMARK 620 7 THR A 196 O 86.1 79.7 149.9 156.5 77.4 103.0 REMARK 620 8 ASP A 198 OD1 141.9 69.0 128.5 88.4 128.4 72.2 79.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1375 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 363 OD1 REMARK 620 2 ASP A 363 OD2 53.2 REMARK 620 3 HOH A2152 O 90.9 81.3 REMARK 620 4 HOH A2263 O 131.8 79.0 74.8 REMARK 620 5 HOH A2442 O 84.1 89.1 170.4 102.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1370 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1371 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 1372 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 1373 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 1374 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 1375 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1376 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CZN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE EXTRALONG FUNGAL MANGANESE PEROXIDASE FROM REMARK 900 CERIPORIOPSIS SUBVERMISPORA REMARK 900 RELATED ID: 4CZO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE EXTRALONG FUNGAL MANGANESE PEROXIDASE FROM REMARK 900 CERIPORIOPSIS SUBVERMISPORA IN COMPLEX WITH MANGANESE REMARK 900 RELATED ID: 4CZP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE EXTRALONG FUNGAL MANGANESE PEROXIDASE FROM REMARK 900 CERIPORIOPSIS SUBVERMISPORA IN COMPLEX WITH MANGANESE (ANOMALOUS REMARK 900 DATA) REMARK 900 RELATED ID: 4CZR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE EXTRALONG FUNGAL MANGANESE PEROXIDASE FROM REMARK 900 CERIPORIOPSIS SUBVERMISPORA IN COMPLEX WITH CADMIUM (ANOMALOUS DATA) DBREF 4CZQ A -3 365 PDB 4CZQ 4CZQ -3 365 SEQRES 1 A 369 MET ALA PRO THR ALA VAL CYS SER ASP GLY THR ARG VAL SEQRES 2 A 369 SER ASN ALA VAL CYS CYS ASP PHE VAL SER LEU GLY GLN SEQRES 3 A 369 ASP LEU GLN SER MET VAL LEU GLN GLY ASP CYS GLY GLU SEQRES 4 A 369 ASP ALA HIS GLU ILE ILE ARG LEU THR PHE HIS ASP ALA SEQRES 5 A 369 VAL ALA ILE SER ARG LYS LEU GLY PRO SER ALA GLY GLY SEQRES 6 A 369 GLY ALA ASP GLY SER MET LEU LEU PHE PRO LEU VAL GLU SEQRES 7 A 369 PRO GLU PHE ALA ALA SER ASN GLY ILE ASP ASP SER VAL SEQRES 8 A 369 ASN ASN LEU ILE PRO PHE LEU SER LEU HIS PRO THR ILE SEQRES 9 A 369 SER ALA GLY ASP LEU VAL GLN PHE ALA GLY ALA VAL ALA SEQRES 10 A 369 LEU SER ASN CYS PRO GLY ALA PRO ARG VAL GLN PHE LEU SEQRES 11 A 369 ALA GLY ARG PRO ASN HIS THR ILE ALA ALA ILE ASP GLY SEQRES 12 A 369 LEU ILE PRO GLU PRO GLN ASP ASN VAL THR SER ILE LEU SEQRES 13 A 369 GLU ARG PHE ASP ASP ALA GLY GLY PHE THR PRO PHE GLU SEQRES 14 A 369 VAL VAL SER LEU LEU ALA SER HIS THR ILE ALA ARG ALA SEQRES 15 A 369 ASP LYS VAL ASP PRO THR LEU ASP ALA ALA PRO PHE ASP SEQRES 16 A 369 THR THR PRO PHE THR PHE ASP SER GLN ILE PHE LEU GLU SEQRES 17 A 369 VAL LEU LEU LYS GLY VAL GLY PHE PRO GLY LEU ASP ASN SEQRES 18 A 369 ASN THR GLY GLU VAL SER SER PRO LEU PRO LEU GLY ASP SEQRES 19 A 369 THR SER THR GLY GLY LYS ASP THR GLY LEU MET ARG LEU SEQRES 20 A 369 GLN SER ASP PHE ALA LEU ALA HIS ASP PRO ARG THR ALA SEQRES 21 A 369 CYS PHE TRP GLN GLY PHE VAL ASP GLN GLN GLU PHE MET SEQRES 22 A 369 SER GLN SER PHE ALA SER ALA PHE ALA LYS LEU ALA VAL SEQRES 23 A 369 LEU GLY HIS ASN THR ASP ASP LEU ILE ASP CYS SER GLU SEQRES 24 A 369 VAL VAL PRO VAL PRO LYS PRO ALA VAL ASP LYS PRO THR SEQRES 25 A 369 THR PHE PRO ALA THR THR GLY PRO GLN ASP LEU GLU LEU SEQRES 26 A 369 SER CYS LEU ALA GLU ARG PHE PRO THR LEU SER VAL ASP SEQRES 27 A 369 PRO GLY ALA GLN GLU THR LEU ILE PRO HIS CYS SER ASP SEQRES 28 A 369 GLY LEU GLU ASN CYS THR SER VAL GLN PHE SER GLY PRO SEQRES 29 A 369 ALA THR ASP SER PRO HET CA A1370 1 HET CA A1371 1 HET HEM A1372 73 HET CD A1373 1 HET CD A1374 1 HET CD A1375 1 HET GOL A1376 14 HETNAM CA CALCIUM ION HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM CD CADMIUM ION HETNAM GOL GLYCEROL HETSYN HEM HEME HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CA 2(CA 2+) FORMUL 4 HEM C34 H32 FE N4 O4 FORMUL 5 CD 3(CD 2+) FORMUL 8 GOL C3 H8 O3 FORMUL 9 HOH *445(H2 O) HELIX 1 1 ASN A 11 CYS A 14 5 4 HELIX 2 2 CYS A 15 VAL A 28 1 14 HELIX 3 3 GLY A 34 VAL A 49 1 16 HELIX 4 4 GLY A 56 GLY A 60 5 5 HELIX 5 5 GLY A 65 PHE A 70 1 6 HELIX 6 6 VAL A 73 PHE A 77 5 5 HELIX 7 7 PHE A 77 ASN A 81 5 5 HELIX 8 8 ILE A 83 HIS A 97 1 15 HELIX 9 9 SER A 101 ASN A 116 1 16 HELIX 10 10 ASN A 147 GLY A 160 1 14 HELIX 11 11 THR A 162 LEU A 170 1 9 HELIX 12 12 ALA A 171 ILE A 175 5 5 HELIX 13 13 SER A 199 LEU A 206 1 8 HELIX 14 14 ASP A 230 GLY A 234 5 5 HELIX 15 15 GLN A 244 ASP A 252 1 9 HELIX 16 16 THR A 255 PHE A 262 1 8 HELIX 17 17 GLN A 265 VAL A 282 1 18 HELIX 18 18 ASN A 286 LEU A 290 5 5 HELIX 19 19 SER A 294 VAL A 297 5 4 HELIX 20 20 GLY A 315 ASP A 318 5 4 SHEET 1 AA 2 ALA A 1 VAL A 2 0 SHEET 2 AA 2 ARG A 8 VAL A 9 -1 O VAL A 9 N ALA A 1 SHEET 1 AB 2 LEU A 126 ALA A 127 0 SHEET 2 AB 2 ILE A 291 ASP A 292 -1 O ILE A 291 N ALA A 127 SHEET 1 AC 2 ARG A 177 ALA A 178 0 SHEET 2 AC 2 ALA A 188 PRO A 189 -1 O ALA A 188 N ALA A 178 SHEET 1 AD 2 GLU A 221 VAL A 222 0 SHEET 2 AD 2 ARG A 242 LEU A 243 -1 O ARG A 242 N VAL A 222 SSBOND 1 CYS A 3 CYS A 15 1555 1555 2.05 SSBOND 2 CYS A 14 CYS A 293 1555 1555 2.05 SSBOND 3 CYS A 33 CYS A 117 1555 1555 2.07 SSBOND 4 CYS A 257 CYS A 323 1555 1555 2.14 SSBOND 5 CYS A 345 CYS A 352 1555 1555 2.04 LINK OE2 GLU A 35 CD CD A1373 1555 1555 2.31 LINK OE2 GLU A 39 CD CD A1373 1555 1555 2.28 LINK O ASP A 47 CA CA A1371 1555 1555 2.43 LINK OD1 ASP A 47 CA CA A1371 1555 1555 2.31 LINK O GLY A 62 CA CA A1371 1555 1555 2.44 LINK OD1 ASP A 64 CA CA A1371 1555 1555 2.41 LINK OG SER A 66 CA CA A1371 1555 1555 2.49 LINK OD2 ASP A 85 CD CD A1374 1555 1555 2.26 LINK NE2 HIS A 173 FE HEM A1372 1555 1555 2.15 LINK O THR A 174 CA CA A1370 1555 1555 2.36 LINK OG1 THR A 174 CA CA A1370 1555 1555 2.46 LINK OD2 ASP A 179 CD CD A1373 1555 1555 2.29 LINK OD1 ASP A 191 CA CA A1370 1555 1555 2.68 LINK OD2 ASP A 191 CA CA A1370 1555 1555 2.46 LINK O THR A 193 CA CA A1370 1555 1555 2.38 LINK OG1 THR A 193 CA CA A1370 1555 1555 2.48 LINK O THR A 196 CA CA A1370 1555 1555 2.54 LINK OD1 ASP A 198 CA CA A1370 1555 1555 2.47 LINK OD1 ASP A 363 CD CD A1375 1555 1555 2.50 LINK OD2 ASP A 363 CD CD A1375 1555 1555 2.43 LINK CA CA A1371 O HOH A2086 1555 1555 2.44 LINK CA CA A1371 O HOH A2095 1555 1555 2.30 LINK O1D HEM A1372 CD CD A1373 1555 1555 2.26 LINK CD CD A1373 O HOH A2068 1555 1555 2.42 LINK CD CD A1373 O HOH A2075 1555 1555 2.37 LINK CD CD A1374 O HOH A2070 1555 1555 2.54 LINK CD CD A1374 O HOH A2076 1555 1555 2.55 LINK CD CD A1374 O HOH A2151 1555 1555 2.45 LINK CD CD A1374 O HOH A2262 1555 1555 2.70 LINK CD CD A1375 O HOH A2152 1555 1555 3.06 LINK CD CD A1375 O HOH A2263 1555 1555 2.74 LINK CD CD A1375 O HOH A2442 1555 1555 2.58 SITE 1 AC1 5 THR A 174 ASP A 191 THR A 193 THR A 196 SITE 2 AC1 5 ASP A 198 SITE 1 AC2 6 ASP A 47 GLY A 62 ASP A 64 SER A 66 SITE 2 AC2 6 HOH A2086 HOH A2095 SITE 1 AC3 21 GLU A 35 HIS A 38 GLU A 39 ARG A 42 SITE 2 AC3 21 PHE A 45 GLU A 143 PRO A 144 SER A 172 SITE 3 AC3 21 HIS A 173 ALA A 176 ARG A 177 ALA A 178 SITE 4 AC3 21 ASP A 179 LYS A 180 VAL A 181 SER A 245 SITE 5 AC3 21 CD A1373 HOH A2067 HOH A2075 HOH A2080 SITE 6 AC3 21 HOH A2443 SITE 1 AC4 6 GLU A 35 GLU A 39 ASP A 179 HEM A1372 SITE 2 AC4 6 HOH A2068 HOH A2075 SITE 1 AC5 5 ASP A 85 HOH A2070 HOH A2076 HOH A2151 SITE 2 AC5 5 HOH A2262 SITE 1 AC6 4 ASP A 363 HOH A2152 HOH A2263 HOH A2442 SITE 1 AC7 7 GLU A 35 ASP A 186 HIS A 344 HOH A2070 SITE 2 AC7 7 HOH A2414 HOH A2430 HOH A2444 CRYST1 108.620 108.620 68.320 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009206 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009206 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014637 0.00000