HEADER GENE REGULATION 22-APR-14 4CZW TITLE STRUCTURE OF THE NEUROSPORA CRASSA PAN2 CATALYTIC UNIT (PROTEASE AND TITLE 2 NUCLEASE DOMAIN) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UBIQUITIN SPECIFIC PROTEASE DOMAIN AND EXORIBONUCLEASE COMPND 5 DOMAIN, RESIDUES 456-1100; COMPND 6 SYNONYM: PAB1P-DEPENDENT POLY(A)-NUCLEASE, PAN DEADENYLATION COMPND 7 COMPLEX CATALYTIC SUBUNIT 2, A-SPECIFIC RIBONUCLEASE SUBUNIT PAN2; COMPND 8 EC: 3.1.13.4; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEUROSPORA CRASSA; SOURCE 3 ORGANISM_TAXID: 5141; SOURCE 4 ATCC: 24698; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETMCN (PNYC) KEYWDS GENE REGULATION, DEED EXORIBONUCLEASE, UBIQUITIN SPECIFIC PROTEASE, KEYWDS 2 DEADENYLATION, MRNA DECAY, PAN2-PAN3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.CHRISTIE,E.IZAURRALDE,O.WEICHENRIEDER REVDAT 3 16-JUL-14 4CZW 1 JRNL REVDAT 2 11-JUN-14 4CZW 1 JRNL REVDAT 1 04-JUN-14 4CZW 0 JRNL AUTH S.JONAS,M.CHRISTIE,D.PETER,D.BHANDARI,B.LOH,E.HUNTZINGER, JRNL AUTH 2 O.WEICHENRIEDER,E.IZAURRALDE JRNL TITL AN ASYMMETRIC PAN3 DIMER RECRUITS A SINGLE PAN2 EXONUCLEASE JRNL TITL 2 TO MEDIATE MRNA DEADENYLATION AND DECAY. JRNL REF NAT.STRUCT.MOL.BIOL. V. 21 599 2014 JRNL REFN ISSN 1545-9993 JRNL PMID 24880343 JRNL DOI 10.1038/NSMB.2837 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.04 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.90 REMARK 3 NUMBER OF REFLECTIONS : 32764 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.2108 REMARK 3 R VALUE (WORKING SET) : 0.2086 REMARK 3 FREE R VALUE : 0.2535 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT : 1660 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.1514 - 5.9582 1.00 2909 145 0.1878 0.2247 REMARK 3 2 5.9582 - 4.7307 1.00 2680 138 0.1818 0.1987 REMARK 3 3 4.7307 - 4.1331 1.00 2636 146 0.1649 0.2244 REMARK 3 4 4.1331 - 3.7554 1.00 2598 137 0.1881 0.2144 REMARK 3 5 3.7554 - 3.4864 1.00 2572 146 0.2221 0.2791 REMARK 3 6 3.4864 - 3.2809 1.00 2550 123 0.2328 0.2696 REMARK 3 7 3.2809 - 3.1166 1.00 2560 141 0.2487 0.3281 REMARK 3 8 3.1166 - 2.9810 1.00 2546 129 0.2517 0.3342 REMARK 3 9 2.9810 - 2.8662 1.00 2525 117 0.2695 0.3113 REMARK 3 10 2.8662 - 2.7673 1.00 2548 133 0.2743 0.3585 REMARK 3 11 2.7673 - 2.6808 1.00 2500 136 0.2788 0.3040 REMARK 3 12 2.6808 - 2.6042 1.00 2480 169 0.3061 0.3457 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.38 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.49 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 58.2 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4996 REMARK 3 ANGLE : 0.540 6785 REMARK 3 CHIRALITY : 0.022 762 REMARK 3 PLANARITY : 0.002 871 REMARK 3 DIHEDRAL : 10.208 1844 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUES 668-677, 771-772, 908- -924 REMARK 3 AND 1094-1100 ARE DISORDERED. SIDE-CHAINS OF RESIDUES 476-478 REMARK 3 WERE TRUNCATED AT CB ATOMS. REMARK 4 REMARK 4 4CZW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-APR-14. REMARK 100 THE PDBE ID CODE IS EBI-60388. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99999, 0.97978, 1.28082, REMARK 200 1.28639 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : DYNAMICALLY BENDABLE MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL (PILATUS 6M) REMARK 200 DETECTOR MANUFACTURER : DECTRIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32906 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.60 REMARK 200 RESOLUTION RANGE LOW (A) : 47.18 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.4 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09 REMARK 200 FOR THE DATA SET : 13.40 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.5 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.85 REMARK 200 FOR SHELL : 1.90 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.7 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4M SODIUM FORMATE, 100MM SODIUM REMARK 280 ACETATE, 100MM SODIUM CITRATE (PH5.5) REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 157.26433 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 314.52867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 235.89650 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 393.16083 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 78.63217 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 157.26433 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 314.52867 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 393.16083 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 235.89650 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 78.63217 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2100 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 668 REMARK 465 LYS A 669 REMARK 465 PRO A 670 REMARK 465 ASN A 671 REMARK 465 ILE A 672 REMARK 465 ARG A 673 REMARK 465 GLY A 674 REMARK 465 MSE A 675 REMARK 465 LYS A 676 REMARK 465 ALA A 677 REMARK 465 GLY A 771 REMARK 465 ILE A 772 REMARK 465 GLU A 908 REMARK 465 ARG A 909 REMARK 465 GLU A 910 REMARK 465 ILE A 911 REMARK 465 HIS A 912 REMARK 465 ILE A 913 REMARK 465 ASP A 914 REMARK 465 GLU A 915 REMARK 465 ASP A 916 REMARK 465 GLY A 917 REMARK 465 LYS A 918 REMARK 465 SER A 919 REMARK 465 LYS A 920 REMARK 465 THR A 921 REMARK 465 ILE A 922 REMARK 465 ARG A 923 REMARK 465 PRO A 924 REMARK 465 LYS A 1094 REMARK 465 THR A 1095 REMARK 465 LEU A 1096 REMARK 465 ASN A 1097 REMARK 465 PHE A 1098 REMARK 465 LYS A 1099 REMARK 465 PRO A 1100 REMARK 465 ALA A 1101 REMARK 465 SER A 1102 REMARK 465 PRO A 1103 REMARK 465 ARG A 1104 REMARK 465 ARG A 1105 REMARK 465 SER A 1106 REMARK 465 GLY A 1107 REMARK 465 CYS A 1108 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 476 OG REMARK 470 LYS A 477 CG CD CE NZ REMARK 470 PHE A 478 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 557 50.59 -110.85 REMARK 500 HIS A 647 -60.45 -107.64 REMARK 500 ASN A 774 79.53 -67.97 REMARK 500 LYS A 794 -157.00 -163.97 REMARK 500 SER A 795 146.60 -170.89 REMARK 500 PHE A 819 78.99 -102.87 REMARK 500 ASP A 821 -121.25 55.57 REMARK 500 TRP A 839 -21.66 -150.69 REMARK 500 ARG A 863 46.66 -109.24 REMARK 500 GLU A 889 59.01 -113.55 REMARK 500 ARG A 941 40.60 -98.66 REMARK 500 ASN A1014 63.41 64.70 REMARK 500 PHE A1029 51.59 -90.40 REMARK 500 LYS A1091 -42.61 -133.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A3094 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 535 SG REMARK 620 2 HIS A 525 NE2 108.4 REMARK 620 3 CYS A 538 SG 109.4 107.2 REMARK 620 4 CYS A 530 SG 113.5 111.3 106.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A3095 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 703 SG REMARK 620 2 CYS A 645 SG 112.1 REMARK 620 3 CYS A 648 SG 111.8 109.8 REMARK 620 4 CYS A 700 SG 105.7 108.4 109.0 REMARK 620 N 1 2 3 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A3094 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A3095 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CZV RELATED DB: PDB REMARK 900 STRUCTURE OF THE NEUROSPORA CRASSA PAN2 WD40 DOMAIN REMARK 900 RELATED ID: 4CZX RELATED DB: PDB REMARK 900 COMPLEX OF NEUROSPORA CRASSA PAN2 (WD40) WITH PAN3 (C-TERM) REMARK 900 RELATED ID: 4CZY RELATED DB: PDB REMARK 900 COMPLEX OF NEUROSPORA CRASSA PAN2 (WD40-CS1) WITH PAN3 REMARK 900 (PSEUDOKINASE AND C-TERM) REMARK 900 RELATED ID: 4D0K RELATED DB: PDB REMARK 900 COMPLEX OF CHAETOMIUM THERMOPHILUM PAN2 (WD40-CS1) WITH REMARK 900 PAN3 (C-TERM) REMARK 999 REMARK 999 SEQUENCE REMARK 999 ORIGINALLY THE CONSTRUCT COMPRISED RESIDUES 342-1100 BUT REMARK 999 THE N-TERMINUS HYDROLYZED DURING PURIFICATION AND IS NOT REMARK 999 PART OF THE CRYSTAL. REMARK 999 THE 8 C-TERMINAL RESIUDES OF CHAIN A STEM FROM THE MULTIPLE REMARK 999 CLONING SITE OF THE EXPRESSION VECTOR. DBREF 4CZW A 456 1100 UNP P0C581 PAN2_NEUCR 456 1100 SEQADV 4CZW ALA A 1101 UNP P0C581 EXPRESSION TAG SEQADV 4CZW SER A 1102 UNP P0C581 EXPRESSION TAG SEQADV 4CZW PRO A 1103 UNP P0C581 EXPRESSION TAG SEQADV 4CZW ARG A 1104 UNP P0C581 EXPRESSION TAG SEQADV 4CZW ARG A 1105 UNP P0C581 EXPRESSION TAG SEQADV 4CZW SER A 1106 UNP P0C581 EXPRESSION TAG SEQADV 4CZW GLY A 1107 UNP P0C581 EXPRESSION TAG SEQADV 4CZW CYS A 1108 UNP P0C581 EXPRESSION TAG SEQRES 1 A 653 ASP HIS TRP SER LEU ARG PRO GLU ALA PRO PRO GLU TYR SEQRES 2 A 653 ARG ILE CYS GLU ILE LYS TYR SER LYS PHE GLY VAL ASP SEQRES 3 A 653 ASP PHE ASP PHE GLY PHE PHE ASN ASN THR PRO TYR PRO SEQRES 4 A 653 GLY LEU GLU ASN ASN ILE THR ASN SER TYR ALA ASN SER SEQRES 5 A 653 LEU LEU GLN VAL MSE HIS TYR THR PRO LEU LEU ARG ASN SEQRES 6 A 653 MSE ALA LEU GLN HIS ALA ALA THR ALA CYS LEU ALA ASP SEQRES 7 A 653 PRO CYS LEU LEU CYS GLU LEU GLY TYR VAL PHE ASP MSE SEQRES 8 A 653 LEU GLN LYS GLY GLU GLY PRO SER CYS HIS ALA THR ASN SEQRES 9 A 653 MSE LEU ARG ALA LEU ASN HIS THR SER ASN ALA SER VAL SEQRES 10 A 653 SER GLY VAL LEU GLU ASP ILE ALA LYS ASP LYS ASN PRO SEQRES 11 A 653 SER THR LEU VAL LYS ASN LEU THR MSE PHE LEU PHE ASP SEQRES 12 A 653 LYS ILE SER GLN ASP TYR LYS GLY THR PRO PRO ILE SER SEQRES 13 A 653 THR GLU LEU GLU ARG THR LEU PHE LYS LEU ASN GLN PRO SEQRES 14 A 653 PRO ASN PRO LEU ASP LEU VAL LYS ARG LEU LEU GLU THR SEQRES 15 A 653 ASP ALA ARG TYR GLN ILE LYS CYS MSE HIS CYS GLN HIS SEQRES 16 A 653 VAL SER PRO ARG THR ALA THR THR PHE VAL ASN LYS LEU SEQRES 17 A 653 CYS TYR PRO ALA ALA LYS PRO ASN ILE ARG GLY MSE LYS SEQRES 18 A 653 ALA GLN ARG ILE THR PHE SER GLN VAL LEU LYS ALA GLY SEQRES 19 A 653 LEU GLU ASN GLU ALA VAL ASN LYS GLY TYR CYS THR LYS SEQRES 20 A 653 CYS GLN ARG TYR GLN ASN LEU ASP GLN ARG LYS ILE ILE SEQRES 21 A 653 PHE ASN ILE PRO ALA VAL LEU ALA LEU CYS THR GLU ILE SEQRES 22 A 653 THR THR ALA GLU HIS ARG LYS LEU TRP SER THR PRO GLY SEQRES 23 A 653 TRP LEU PRO GLU GLU ILE GLY ILE ILE VAL ASP GLN GLY SEQRES 24 A 653 HIS VAL TYR CYS TYR GLU GLY ASP ASP LEU LYS LEU HIS SEQRES 25 A 653 LEU ASN ARG GLY ILE HIS ASN ILE THR VAL TYR SER LEU SEQRES 26 A 653 VAL GLY THR VAL VAL ASN VAL GLU THR LYS SER PRO GLN SEQRES 27 A 653 LYS SER HIS LEU VAL ALA THR VAL ASN VAL GLY ARG ALA SEQRES 28 A 653 GLU PRO GLU SER LYS ASP GLN ASP ARG TRP HIS LEU PHE SEQRES 29 A 653 ASN ASP PHE SER VAL ARG GLY ILE SER LYS VAL GLU ALA SEQRES 30 A 653 LEU THR PHE ASN ALA ALA TRP LYS MSE PRO VAL VAL VAL SEQRES 31 A 653 MSE PHE GLN VAL LYS ALA ALA ASN HIS ARG PHE ASN MSE SEQRES 32 A 653 ASP TRP LYS THR ARG LEU ASP THR SER VAL LEU PHE ARG SEQRES 33 A 653 ASP ASN ASN PRO HIS ALA LEU LYS THR TYR GLU LEU LEU SEQRES 34 A 653 ASP ARG GLU THR GLU ILE PRO GLY PRO ASP THR VAL ILE SEQRES 35 A 653 ALA ILE ASP THR GLU PHE ILE ARG LEU LYS GLU ARG GLU SEQRES 36 A 653 ILE HIS ILE ASP GLU ASP GLY LYS SER LYS THR ILE ARG SEQRES 37 A 653 PRO ILE SER HIS ALA ILE ALA ARG ALA SER VAL VAL ARG SEQRES 38 A 653 GLY GLN GLY SER ARG GLU GLY VAL ALA PHE ILE ASP ASP SEQRES 39 A 653 TYR ILE HIS ILE LYS GLU THR ILE VAL ASP TYR LEU THR SEQRES 40 A 653 GLU TRP SER GLY ILE THR PRO THR ASP LEU ASP PRO ILE SEQRES 41 A 653 ASN SER GLN ARG ASN LEU VAL SER PRO LYS THR ALA TYR SEQRES 42 A 653 LYS LYS LEU TRP VAL LEU VAL ASN LEU GLY CYS LYS PHE SEQRES 43 A 653 LEU GLY HIS GLY LEU SER GLN ASP PHE ARG VAL ILE ASN SEQRES 44 A 653 ILE GLN VAL PRO ARG ASN GLN VAL ILE ASP THR SER ILE SEQRES 45 A 653 ILE PHE MSE LYS PRO PRO SER GLN ARG LYS ILE SER LEU SEQRES 46 A 653 ALA PHE LEU ALA TRP TYR LEU LEU LYS GLU ASP ILE GLN SEQRES 47 A 653 GLN ASN THR HIS ASP SER ILE GLU ASP ALA GLN THR ALA SEQRES 48 A 653 LEU LYS LEU TYR ARG LYS TYR GLU GLU PHE MSE ALA ASN SEQRES 49 A 653 GLY SER PHE HIS ASP VAL LEU GLU ALA LEU TYR LYS LYS SEQRES 50 A 653 GLY LYS THR LEU ASN PHE LYS PRO ALA SER PRO ARG ARG SEQRES 51 A 653 SER GLY CYS MODRES 4CZW MSE A 512 MET SELENOMETHIONINE MODRES 4CZW MSE A 521 MET SELENOMETHIONINE MODRES 4CZW MSE A 546 MET SELENOMETHIONINE MODRES 4CZW MSE A 560 MET SELENOMETHIONINE MODRES 4CZW MSE A 594 MET SELENOMETHIONINE MODRES 4CZW MSE A 646 MET SELENOMETHIONINE MODRES 4CZW MSE A 841 MET SELENOMETHIONINE MODRES 4CZW MSE A 846 MET SELENOMETHIONINE MODRES 4CZW MSE A 858 MET SELENOMETHIONINE MODRES 4CZW MSE A 1030 MET SELENOMETHIONINE MODRES 4CZW MSE A 1077 MET SELENOMETHIONINE HET MSE A 512 8 HET MSE A 521 8 HET MSE A 546 8 HET MSE A 560 8 HET MSE A 594 8 HET MSE A 646 8 HET MSE A 841 8 HET MSE A 846 8 HET MSE A 858 8 HET MSE A1030 8 HET MSE A1077 8 HET ZN A3094 1 HET ZN A3095 1 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 2 ZN 2(ZN 2+) FORMUL 4 HOH *108(H2 O) HELIX 1 1 ASN A 506 HIS A 513 1 8 HELIX 2 2 PRO A 516 ALA A 526 1 11 HELIX 3 3 LEU A 536 LYS A 549 1 14 HELIX 4 4 THR A 558 LEU A 564 1 7 HELIX 5 5 PRO A 585 TYR A 604 1 20 HELIX 6 6 GLU A 613 LEU A 618 1 6 HELIX 7 7 PRO A 627 LEU A 635 1 9 HELIX 8 8 PHE A 682 LEU A 690 1 9 HELIX 9 9 ALA A 731 TRP A 737 1 7 HELIX 10 10 GLY A 761 ASN A 769 1 9 HELIX 11 11 LYS A 829 ALA A 832 1 4 HELIX 12 12 ASP A 859 THR A 862 1 4 HELIX 13 13 SER A 867 PHE A 870 1 4 HELIX 14 14 THR A 962 SER A 965 1 4 HELIX 15 15 PRO A 969 LEU A 972 1 4 HELIX 16 16 PRO A 984 ASN A 996 1 13 HELIX 17 17 LEU A 1006 ILE A 1013 1 8 HELIX 18 18 THR A 1025 ILE A 1028 1 4 HELIX 19 19 LEU A 1040 LEU A 1047 1 8 HELIX 20 20 SER A 1059 ALA A 1078 1 20 HELIX 21 21 PHE A 1082 LEU A 1089 1 8 SHEET 1 AA 2 GLY A 495 LEU A 496 0 SHEET 2 AA 2 SER A 554 CYS A 555 1 N CYS A 555 O GLY A 495 SHEET 1 AB 4 VAL A 651 ALA A 656 0 SHEET 2 AB 4 ASP A 638 CYS A 645 -1 O ALA A 639 N ALA A 656 SHEET 3 AB 4 ARG A 705 ASN A 717 -1 O ASP A 710 N LYS A 644 SHEET 4 AB 4 GLU A 693 CYS A 700 -1 O ALA A 694 N GLN A 711 SHEET 1 AC 7 ASN A 661 LYS A 662 0 SHEET 2 AC 7 VAL A 721 CYS A 725 1 O ALA A 723 N ASN A 661 SHEET 3 AC 7 LYS A 840 VAL A 849 -1 O VAL A 845 N LEU A 724 SHEET 4 AC 7 THR A 776 THR A 789 1 O SER A 779 N GLN A 848 SHEET 5 AC 7 LYS A 794 ASN A 802 -1 O LYS A 794 N THR A 789 SHEET 6 AC 7 TRP A 816 ASN A 820 -1 O HIS A 817 N VAL A 801 SHEET 7 AC 7 SER A 823 GLY A 826 -1 O SER A 823 N ASN A 820 SHEET 1 AD 6 ASN A 661 LYS A 662 0 SHEET 2 AD 6 VAL A 721 CYS A 725 1 O ALA A 723 N ASN A 661 SHEET 3 AD 6 LYS A 840 VAL A 849 -1 O VAL A 845 N LEU A 724 SHEET 4 AD 6 THR A 776 THR A 789 1 O SER A 779 N GLN A 848 SHEET 5 AD 6 GLU A 746 ASP A 752 -1 O ILE A 747 N TYR A 778 SHEET 6 AD 6 HIS A 755 GLU A 760 -1 O HIS A 755 N ASP A 752 SHEET 1 AE 2 ILE A 957 ASP A 959 0 SHEET 2 AE 2 VAL A 896 LEU A 906 -1 O ARG A 905 N VAL A 958 SHEET 1 AF 5 ASN A 980 VAL A 982 0 SHEET 2 AF 5 ALA A 945 ILE A 951 1 O ASP A 948 N ASN A 980 SHEET 3 AF 5 SER A 926 ARG A 936 -1 O ALA A 930 N ILE A 951 SHEET 4 AF 5 VAL A 896 LEU A 906 -1 O ALA A 898 N VAL A 935 SHEET 5 AF 5 ILE A 957 ASP A 959 -1 N VAL A 958 O ARG A 905 SHEET 1 AG 6 ASN A 980 VAL A 982 0 SHEET 2 AG 6 ALA A 945 ILE A 951 1 O ASP A 948 N ASN A 980 SHEET 3 AG 6 SER A 926 ARG A 936 -1 O ALA A 930 N ILE A 951 SHEET 4 AG 6 VAL A 896 LEU A 906 -1 O ALA A 898 N VAL A 935 SHEET 5 AG 6 LYS A1000 GLY A1003 1 O LYS A1000 N ILE A 897 SHEET 6 AG 6 VAL A1022 ASP A1024 -1 O ILE A1023 N GLY A1003 LINK C VAL A 511 N MSE A 512 1555 1555 1.33 LINK C MSE A 512 N HIS A 513 1555 1555 1.33 LINK C ASN A 520 N MSE A 521 1555 1555 1.33 LINK C MSE A 521 N ALA A 522 1555 1555 1.33 LINK C ASP A 545 N MSE A 546 1555 1555 1.33 LINK C MSE A 546 N LEU A 547 1555 1555 1.33 LINK C ASN A 559 N MSE A 560 1555 1555 1.33 LINK C MSE A 560 N LEU A 561 1555 1555 1.33 LINK C THR A 593 N MSE A 594 1555 1555 1.33 LINK C MSE A 594 N PHE A 595 1555 1555 1.33 LINK C CYS A 645 N MSE A 646 1555 1555 1.33 LINK C MSE A 646 N HIS A 647 1555 1555 1.33 LINK C LYS A 840 N MSE A 841 1555 1555 1.33 LINK C MSE A 841 N PRO A 842 1555 1555 1.34 LINK C VAL A 845 N MSE A 846 1555 1555 1.33 LINK C MSE A 846 N PHE A 847 1555 1555 1.33 LINK C ASN A 857 N MSE A 858 1555 1555 1.33 LINK C MSE A 858 N ASP A 859 1555 1555 1.33 LINK C PHE A1029 N MSE A1030 1555 1555 1.33 LINK C MSE A1030 N LYS A1031 1555 1555 1.33 LINK C PHE A1076 N MSE A1077 1555 1555 1.33 LINK C MSE A1077 N ALA A1078 1555 1555 1.33 LINK ZN ZN A3094 SG CYS A 535 1555 1555 2.30 LINK ZN ZN A3094 NE2 HIS A 525 1555 1555 2.04 LINK ZN ZN A3094 SG CYS A 538 1555 1555 2.32 LINK ZN ZN A3094 SG CYS A 530 1555 1555 2.34 LINK ZN ZN A3095 SG CYS A 703 1555 1555 2.32 LINK ZN ZN A3095 SG CYS A 645 1555 1555 2.33 LINK ZN ZN A3095 SG CYS A 648 1555 1555 2.25 LINK ZN ZN A3095 SG CYS A 700 1555 1555 2.28 CISPEP 1 ASP A 533 PRO A 534 0 3.51 CISPEP 2 SER A 791 PRO A 792 0 -2.71 SITE 1 AC1 4 HIS A 525 CYS A 530 CYS A 535 CYS A 538 SITE 1 AC2 4 CYS A 645 CYS A 648 CYS A 700 CYS A 703 CRYST1 85.565 85.565 471.793 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011687 0.006748 0.000000 0.00000 SCALE2 0.000000 0.013495 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002120 0.00000