HEADER GENE REGULATION 22-APR-14 4CZX TITLE COMPLEX OF NEUROSPORA CRASSA PAN2 (WD40) WITH PAN3 (C-TERM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: WD40 DOMAIN, RESIDUES 1-321; COMPND 5 SYNONYM: PAB1P-DEPENDENT POLY(A)-NUCLEASE, PAN DEADENYLATION COMPLEX COMPND 6 CATALYTIC SUBUNIT 2, A-SPECIFIC RIBONUCLEASE SUBUNIT PAN2; COMPND 7 EC: 3.1.13.4; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN3; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: C-TERM, RESIDUES 538-656; COMPND 13 SYNONYM: PAB1P-DEPENDENT POLY(A)-NUCLEASE, PAN DEADENYLATION COMPLEX COMPND 14 SUBUNIT 3, A-SPECIFIC RIBONUCLEASE SUBUNIT PAN3; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEUROSPORA CRASSA; SOURCE 3 ORGANISM_TAXID: 5141; SOURCE 4 ATCC: 24698; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETMCN (PNYC); SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: NEUROSPORA CRASSA; SOURCE 13 ORGANISM_TAXID: 5141; SOURCE 14 ATCC: 24698; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PETMCN (PNEA) KEYWDS GENE REGULATION, WD40 DOMAIN, C-TERMINAL KNOB DOMAIN, DEADENYLATION, KEYWDS 2 MRNA DECAY, PAN2-PAN3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.JONAS,E.IZAURRALDE,O.WEICHENRIEDER REVDAT 5 20-DEC-23 4CZX 1 REMARK REVDAT 4 29-APR-15 4CZX 1 REMARK REVDAT 3 16-JUL-14 4CZX 1 JRNL REVDAT 2 11-JUN-14 4CZX 1 JRNL REVDAT 1 04-JUN-14 4CZX 0 JRNL AUTH S.JONAS,M.CHRISTIE,D.PETER,D.BHANDARI,B.LOH,E.HUNTZINGER, JRNL AUTH 2 O.WEICHENRIEDER,E.IZAURRALDE JRNL TITL AN ASYMMETRIC PAN3 DIMER RECRUITS A SINGLE PAN2 EXONUCLEASE JRNL TITL 2 TO MEDIATE MRNA DEADENYLATION AND DECAY. JRNL REF NAT.STRUCT.MOL.BIOL. V. 21 599 2014 JRNL REFN ISSN 1545-9993 JRNL PMID 24880343 JRNL DOI 10.1038/NSMB.2837 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX PHENIX.REFINE 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 48015 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2431 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.2251 - 4.7576 0.99 2859 156 0.1483 0.1761 REMARK 3 2 4.7576 - 3.7766 1.00 2737 152 0.1362 0.1505 REMARK 3 3 3.7766 - 3.2994 1.00 2717 148 0.1576 0.1790 REMARK 3 4 3.2994 - 2.9978 1.00 2697 151 0.1734 0.2119 REMARK 3 5 2.9978 - 2.7829 1.00 2680 145 0.1819 0.1941 REMARK 3 6 2.7829 - 2.6188 1.00 2710 142 0.1799 0.2294 REMARK 3 7 2.6188 - 2.4877 1.00 2703 127 0.1789 0.2215 REMARK 3 8 2.4877 - 2.3794 1.00 2699 122 0.1713 0.2364 REMARK 3 9 2.3794 - 2.2878 1.00 2664 155 0.1665 0.1934 REMARK 3 10 2.2878 - 2.2089 1.00 2642 162 0.1756 0.2227 REMARK 3 11 2.2089 - 2.1398 1.00 2685 134 0.1715 0.2082 REMARK 3 12 2.1398 - 2.0786 1.00 2644 148 0.1758 0.2068 REMARK 3 13 2.0786 - 2.0239 1.00 2683 137 0.1949 0.2394 REMARK 3 14 2.0239 - 1.9745 1.00 2636 127 0.2066 0.2532 REMARK 3 15 1.9745 - 1.9296 1.00 2654 143 0.2300 0.2943 REMARK 3 16 1.9296 - 1.8886 0.99 2650 137 0.2677 0.3062 REMARK 3 17 1.8886 - 1.8508 0.96 2524 145 0.3034 0.2802 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3534 REMARK 3 ANGLE : 1.055 4807 REMARK 3 CHIRALITY : 0.041 533 REMARK 3 PLANARITY : 0.005 619 REMARK 3 DIHEDRAL : 13.722 1314 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID -2 THROUGH 321) REMARK 3 ORIGIN FOR THE GROUP (A): 1.2306 62.8157 -6.0920 REMARK 3 T TENSOR REMARK 3 T11: 0.2457 T22: 0.1399 REMARK 3 T33: 0.1404 T12: 0.0079 REMARK 3 T13: -0.0411 T23: -0.0513 REMARK 3 L TENSOR REMARK 3 L11: 1.2298 L22: 2.1366 REMARK 3 L33: 1.9241 L12: -0.3337 REMARK 3 L13: -0.5677 L23: 0.0142 REMARK 3 S TENSOR REMARK 3 S11: 0.0555 S12: 0.1610 S13: -0.1269 REMARK 3 S21: -0.3868 S22: -0.1072 S23: 0.0325 REMARK 3 S31: -0.1722 S32: -0.1331 S33: -0.0170 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 539 THROUGH 645) REMARK 3 ORIGIN FOR THE GROUP (A): -1.1160 40.0520 21.4267 REMARK 3 T TENSOR REMARK 3 T11: 0.2317 T22: 0.2649 REMARK 3 T33: 0.2547 T12: -0.0164 REMARK 3 T13: 0.0279 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 1.2594 L22: 0.8763 REMARK 3 L33: 1.5969 L12: 0.0123 REMARK 3 L13: 0.6685 L23: -0.6172 REMARK 3 S TENSOR REMARK 3 S11: -0.0472 S12: -0.0543 S13: 0.0661 REMARK 3 S21: -0.0318 S22: -0.1113 S23: -0.0089 REMARK 3 S31: -0.1215 S32: 0.0742 S33: -0.0010 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE FOLLOWING RESIDUES WERE DISORDERED, REMARK 3 CHAIN B 538, 560-563, 646-656. THE FOLLOWING RESIDUES WERE REMARK 3 TRUNCATED AT CB, CHAIN A 316, 318, 321, CHAIN B 564. THE REMARK 3 FOLLOWING RESIDUES WERE REFINED WITH DOUBLE CONFORMATIONS CHAIN REMARK 3 A 11, 23, 85, 122, 131, 133, 134, 184, CHAIN B 603, 617, 635. REMARK 4 REMARK 4 4CZX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-APR-14. REMARK 100 THE DEPOSITION ID IS D_1290060425. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-SEP-13; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; NULL REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SLS; SLS REMARK 200 BEAMLINE : X10SA; X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979380; 1.039960 REMARK 200 MONOCHROMATOR : SI(111); NULL REMARK 200 OPTICS : DYNAMICALLY BENDABLE MIRROR; REMARK 200 NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL; PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M; DECTRIS REMARK 200 PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48059 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 49.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05000 REMARK 200 FOR THE DATA SET : 19.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.57000 REMARK 200 FOR SHELL : 2.950 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER EP REMARK 200 STARTING MODEL: PDB ENTRY 4BWX REMARK 200 REMARK 200 REMARK: MOLECULAR REPLACEMENT PHASES WERE USED FOR AU-SITE REMARK 200 IDENTIFICATION REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 4000, 20% GLYCEROL, 0.1M REMARK 280 MES/IMIDAZOLE (PH 6.5), 30MM SODIUM NITRATE, 30MM DI-SODIUM REMARK 280 HYDROGEN PHOSPHATE, 30MM AMMONIUM SULFATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.25750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.25750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 27.96250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 80.32550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 27.96250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 80.32550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 62.25750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 27.96250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 80.32550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 62.25750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 27.96250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 80.32550 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 62.25750 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2085 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 510 REMARK 465 GLY B 511 REMARK 465 SER B 512 REMARK 465 SER B 513 REMARK 465 HIS B 514 REMARK 465 HIS B 515 REMARK 465 HIS B 516 REMARK 465 HIS B 517 REMARK 465 HIS B 518 REMARK 465 HIS B 519 REMARK 465 SER B 520 REMARK 465 SER B 521 REMARK 465 GLY B 522 REMARK 465 THR B 523 REMARK 465 GLY B 524 REMARK 465 SER B 525 REMARK 465 GLY B 526 REMARK 465 GLU B 527 REMARK 465 ASN B 528 REMARK 465 LEU B 529 REMARK 465 TYR B 530 REMARK 465 PHE B 531 REMARK 465 GLN B 532 REMARK 465 GLY B 533 REMARK 465 HIS B 534 REMARK 465 MET B 535 REMARK 465 LEU B 536 REMARK 465 GLU B 537 REMARK 465 GLU B 538 REMARK 465 SER B 560 REMARK 465 CYS B 561 REMARK 465 GLY B 562 REMARK 465 VAL B 563 REMARK 465 GLU B 646 REMARK 465 SER B 647 REMARK 465 LYS B 648 REMARK 465 PRO B 649 REMARK 465 SER B 650 REMARK 465 ALA B 651 REMARK 465 THR B 652 REMARK 465 GLY B 653 REMARK 465 ALA B 654 REMARK 465 THR B 655 REMARK 465 ILE B 656 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 316 CG CD CE NZ REMARK 470 GLN A 318 CG CD OE1 NE2 REMARK 470 GLU A 321 CG CD OE1 OE2 REMARK 470 HIS B 564 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 59 -81.99 -114.33 REMARK 500 ASP A 110 65.16 -153.45 REMARK 500 THR A 117 -137.95 -129.41 REMARK 500 SER A 159 -99.19 -128.90 REMARK 500 PRO A 221 36.22 -81.60 REMARK 500 PRO A 241 2.45 -66.73 REMARK 500 LEU A 242 118.50 76.30 REMARK 500 LYS A 316 81.10 16.57 REMARK 500 GLU B 556 65.84 32.87 REMARK 500 ARG B 557 -151.17 -89.58 REMARK 500 ASP B 589 5.90 82.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CZV RELATED DB: PDB REMARK 900 STRUCTURE OF THE NEUROSPORA CRASSA PAN2 WD40 DOMAIN REMARK 900 RELATED ID: 4CZW RELATED DB: PDB REMARK 900 STRUCTURE OF THE NEUROSPORA CRASSA PAN2 CATALYTIC UNIT (PROTEASE REMARK 900 AND NUCLEASE DOMAIN) REMARK 900 RELATED ID: 4CZY RELATED DB: PDB REMARK 900 COMPLEX OF NEUROSPORA CRASSA PAN2 (WD40-CS1) WITH PAN3 REMARK 900 (PSEUDOKINASE AND C-TERM) REMARK 900 RELATED ID: 4D0K RELATED DB: PDB REMARK 900 COMPLEX OF CHAETOMIUM THERMOPHILUM PAN2 (WD40-CS1) WITH PAN3 (C- REMARK 900 TERM) REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE 3 N-TERMINAL RESIDUES OF CHAIN A REMAIN FROM THE REMARK 999 PURIFICATION TAG REMARK 999 THE N-TERMINAL 28 RESIDUES OF CHAIN B CORRESPOND TO THE REMARK 999 HIS-TAG AND TEV SITE. DBREF 4CZX A 1 321 UNP P0C581 PAN2_NEUCR 1 321 DBREF 4CZX B 538 656 UNP Q7SDP4 PAN3_NEUCR 538 656 SEQADV 4CZX PRO A -2 UNP P0C581 EXPRESSION TAG SEQADV 4CZX HIS A -1 UNP P0C581 EXPRESSION TAG SEQADV 4CZX MET A 0 UNP P0C581 EXPRESSION TAG SEQADV 4CZX MET B 510 UNP Q7SDP4 EXPRESSION TAG SEQADV 4CZX GLY B 511 UNP Q7SDP4 EXPRESSION TAG SEQADV 4CZX SER B 512 UNP Q7SDP4 EXPRESSION TAG SEQADV 4CZX SER B 513 UNP Q7SDP4 EXPRESSION TAG SEQADV 4CZX HIS B 514 UNP Q7SDP4 EXPRESSION TAG SEQADV 4CZX HIS B 515 UNP Q7SDP4 EXPRESSION TAG SEQADV 4CZX HIS B 516 UNP Q7SDP4 EXPRESSION TAG SEQADV 4CZX HIS B 517 UNP Q7SDP4 EXPRESSION TAG SEQADV 4CZX HIS B 518 UNP Q7SDP4 EXPRESSION TAG SEQADV 4CZX HIS B 519 UNP Q7SDP4 EXPRESSION TAG SEQADV 4CZX SER B 520 UNP Q7SDP4 EXPRESSION TAG SEQADV 4CZX SER B 521 UNP Q7SDP4 EXPRESSION TAG SEQADV 4CZX GLY B 522 UNP Q7SDP4 EXPRESSION TAG SEQADV 4CZX THR B 523 UNP Q7SDP4 EXPRESSION TAG SEQADV 4CZX GLY B 524 UNP Q7SDP4 EXPRESSION TAG SEQADV 4CZX SER B 525 UNP Q7SDP4 EXPRESSION TAG SEQADV 4CZX GLY B 526 UNP Q7SDP4 EXPRESSION TAG SEQADV 4CZX GLU B 527 UNP Q7SDP4 EXPRESSION TAG SEQADV 4CZX ASN B 528 UNP Q7SDP4 EXPRESSION TAG SEQADV 4CZX LEU B 529 UNP Q7SDP4 EXPRESSION TAG SEQADV 4CZX TYR B 530 UNP Q7SDP4 EXPRESSION TAG SEQADV 4CZX PHE B 531 UNP Q7SDP4 EXPRESSION TAG SEQADV 4CZX GLN B 532 UNP Q7SDP4 EXPRESSION TAG SEQADV 4CZX GLY B 533 UNP Q7SDP4 EXPRESSION TAG SEQADV 4CZX HIS B 534 UNP Q7SDP4 EXPRESSION TAG SEQADV 4CZX MET B 535 UNP Q7SDP4 EXPRESSION TAG SEQADV 4CZX LEU B 536 UNP Q7SDP4 EXPRESSION TAG SEQADV 4CZX GLU B 537 UNP Q7SDP4 EXPRESSION TAG SEQRES 1 A 324 PRO HIS MET MET ASP SER ARG ASP TRP THR GLN LEU GLY SEQRES 2 A 324 CYS VAL ALA TYR PRO SER PRO ILE HIS PRO ASP TYR HIS SEQRES 3 A 324 ALA GLY PRO ALA SER THR ILE ALA PHE ASP ASN GLN ASP SEQRES 4 A 324 GLU LEU LEU TRP ILE GLY THR GLN LYS GLY PHE ALA GLY SEQRES 5 A 324 SER PHE ILE GLY ARG GLU LEU LYS ARG PHE THR ALA PHE SEQRES 6 A 324 ARG ILE HIS PRO GLU THR ASP GLY PRO LEU ARG GLN PHE SEQRES 7 A 324 LEU PHE VAL ASP LYS GLY VAL ILE PHE LEU GLY SER ARG SEQRES 8 A 324 SER VAL TYR MET ALA ALA ARG SER GLY VAL PRO ILE TRP SEQRES 9 A 324 SER ILE ARG HIS GLU SER MET GLN ASP LEU ARG ALA MET SEQRES 10 A 324 SER PHE THR SER LYS GLY THR SER GLU ILE LEU VAL ALA SEQRES 11 A 324 GLY TRP GLN ASN LYS MET LEU VAL ILE ASP VAL ASN LYS SEQRES 12 A 324 GLY GLU VAL VAL LYS GLU LEU PRO THR GLN ASP GLN TYR SEQRES 13 A 324 SER PHE LEU LYS MET SER ARG TYR ILE CYS ALA ALA THR SEQRES 14 A 324 ASN LYS GLY THR VAL ASN ILE LEU ASP PRO ILE THR PHE SEQRES 15 A 324 THR ILE LYS LYS GLN TRP GLN ALA HIS GLY ALA PHE ILE SEQRES 16 A 324 ASN ASP LEU ASP THR SER ASN ASP PHE ILE VAL THR CYS SEQRES 17 A 324 GLY GLY SER HIS ARG GLN THR HIS ASN THR PRO ALA ILE SEQRES 18 A 324 LEU ASP PRO TYR VAL LYS VAL PHE ASP LEU LYS ASN MET SEQRES 19 A 324 SER ALA MET ASN PRO VAL PRO PHE ALA PRO LEU ALA ALA SEQRES 20 A 324 HIS VAL ARG MET HIS PRO ARG MET LEU THR THR ALA ILE SEQRES 21 A 324 VAL VAL ASN GLN ALA GLY GLN ILE HIS VAL THR ASP LEU SEQRES 22 A 324 LEU ASN PRO SER ASN SER GLN VAL CYS TYR THR GLN PRO SEQRES 23 A 324 GLN GLY VAL VAL LEU HIS PHE ASP VAL SER ARG THR GLY SEQRES 24 A 324 GLU GLY LYS ALA LEU ALA ASP ASN LYS HIS ASN THR TYR SEQRES 25 A 324 VAL TRP GLY SER PRO ASN LYS ILE GLN PHE THR GLU SEQRES 1 B 147 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 147 THR GLY SER GLY GLU ASN LEU TYR PHE GLN GLY HIS MET SEQRES 3 B 147 LEU GLU GLU LEU GLU ASN GLY ARG ILE ALA ARG LEU MET SEQRES 4 B 147 PHE LYS LEU SER VAL VAL ASN GLU ARG GLY ASP SER CYS SEQRES 5 B 147 GLY VAL HIS ASN TRP SER GLU THR GLY GLU ARG LEU LEU SEQRES 6 B 147 LEU LYS LEU PHE ARG ASP TYR VAL PHE HIS GLN VAL ASP SEQRES 7 B 147 ALA ASP GLY LYS ALA ARG LEU ASP THR ASN HIS TYR LEU SEQRES 8 B 147 ASN CYS LEU SER LYS LEU ASP ALA SER SER GLU GLU GLN SEQRES 9 B 147 ILE LEU LEU THR SER ARG ASP ASN ALA THR VAL PHE VAL SEQRES 10 B 147 VAL SER TYR ARG SER ILE ARG GLN MET LEU ASP ARG ALA SEQRES 11 B 147 TYR GLY GLU LEU GLY LYS GLU SER LYS PRO SER ALA THR SEQRES 12 B 147 GLY ALA THR ILE HET MES A 400 12 HET PO4 A 401 5 HET GOL A 402 6 HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MES C6 H13 N O4 S FORMUL 4 PO4 O4 P 3- FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *308(H2 O) HELIX 1 1 GLU B 540 VAL B 554 1 15 HELIX 2 2 TRP B 566 PHE B 583 1 18 HELIX 3 3 THR B 596 ASP B 607 1 12 HELIX 4 4 TYR B 629 LEU B 643 1 15 SHEET 1 AA 4 SER A 276 TYR A 280 0 SHEET 2 AA 4 GLN A 264 ASP A 269 -1 O ILE A 265 N CYS A 279 SHEET 3 AA 4 THR A 255 VAL A 259 -1 O ALA A 256 N THR A 268 SHEET 4 AA 4 HIS A 245 MET A 248 -1 O HIS A 245 N VAL A 259 SHEET 1 AB 4 THR A 7 ALA A 13 0 SHEET 2 AB 4 ASN A 307 GLY A 312 -1 O THR A 308 N VAL A 12 SHEET 3 AB 4 LYS A 299 ASP A 303 -1 O LYS A 299 N TRP A 311 SHEET 4 AB 4 VAL A 287 VAL A 292 -1 N LEU A 288 O ALA A 302 SHEET 1 AC 4 THR A 29 PHE A 32 0 SHEET 2 AC 4 LEU A 38 GLY A 42 -1 O TRP A 40 N ALA A 31 SHEET 3 AC 4 PHE A 47 ILE A 52 -1 O GLY A 49 N ILE A 41 SHEET 4 AC 4 LYS A 57 ARG A 63 -1 O LYS A 57 N ILE A 52 SHEET 1 AD 4 GLN A 74 PHE A 77 0 SHEET 2 AD 4 VAL A 82 LEU A 85 -1 O ILE A 83 N LEU A 76 SHEET 3 AD 4 VAL A 90 ALA A 93 -1 O TYR A 91 N PHE A 84 SHEET 4 AD 4 PRO A 99 ILE A 103 -1 N ILE A 100 O MET A 92 SHEET 1 AE 4 LEU A 111 PHE A 116 0 SHEET 2 AE 4 GLU A 123 GLY A 128 -1 O LEU A 125 N SER A 115 SHEET 3 AE 4 LYS A 132 ASP A 137 -1 O LEU A 134 N VAL A 126 SHEET 4 AE 4 GLU A 142 PRO A 148 -1 O GLU A 142 N ASP A 137 SHEET 1 AF 4 TYR A 153 MET A 158 0 SHEET 2 AF 4 ILE A 162 THR A 166 -1 O CYS A 163 N LYS A 157 SHEET 3 AF 4 THR A 170 LEU A 174 -1 O THR A 170 N THR A 166 SHEET 4 AF 4 ILE A 181 GLN A 186 -1 N LYS A 182 O ILE A 173 SHEET 1 AG 4 PHE A 191 THR A 197 0 SHEET 2 AG 4 PHE A 201 GLY A 207 -1 O VAL A 203 N ASP A 196 SHEET 3 AG 4 TYR A 222 ASP A 227 -1 O LYS A 224 N THR A 204 SHEET 4 AG 4 SER A 232 ALA A 233 1 O SER A 232 N ASP A 227 SHEET 1 AH 4 PHE A 191 THR A 197 0 SHEET 2 AH 4 PHE A 201 GLY A 207 -1 O VAL A 203 N ASP A 196 SHEET 3 AH 4 TYR A 222 ASP A 227 -1 O LYS A 224 N THR A 204 SHEET 4 AH 4 VAL A 237 PRO A 238 -1 O VAL A 237 N VAL A 223 SHEET 1 AI 2 SER A 232 ALA A 233 0 SHEET 2 AI 2 TYR A 222 ASP A 227 1 O ASP A 227 N SER A 232 SHEET 1 BA 2 GLN B 613 THR B 617 0 SHEET 2 BA 2 VAL B 624 SER B 628 -1 O PHE B 625 N LEU B 616 CISPEP 1 TYR A 14 PRO A 15 0 0.54 SITE 1 AC1 13 TRP A 129 SER A 154 PHE A 191 ILE A 192 SITE 2 AC1 13 ASN A 193 ARG A 210 GLN A 211 THR A 212 SITE 3 AC1 13 HIS A 213 ALA A 217 HOH A2123 HOH A2159 SITE 4 AC1 13 HOH A2178 SITE 1 AC2 2 ARG A 88 ARG A 104 SITE 1 AC3 6 TRP A 129 ASN A 167 LYS A 168 ARG A 210 SITE 2 AC3 6 HOH A2161 HOH A2238 CRYST1 55.925 160.651 124.515 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017881 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006225 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008031 0.00000