HEADER GENE REGULATION 28-APR-14 4D0K TITLE COMPLEX OF CHAETOMIUM THERMOPHILUM PAN2 (WD40-CS1) WITH PAN3 (C-TERM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: A-SPECIFIC RIBONUCLEASE SUBUNIT PAN2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: WD40 DOMAIN AND CS1, RESIDUES 1-457; COMPND 5 SYNONYM: PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN2, COMPND 6 PAB1P-DEPENDENT POLY(A)-NUCLEASE, PAN DEADENYLATION COMPLEX CATALYTIC COMPND 7 SUBUNIT 2; COMPND 8 EC: 3.1.13.4; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN3- COMPND 12 LIKE PROTEIN; COMPND 13 CHAIN: B, C; COMPND 14 FRAGMENT: C-TERM, RESIDUES 448-555; COMPND 15 SYNONYM: PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN3, COMPND 16 PAB1P-DEPENDENT POLY(A)-NUCLEASE, PAN DEADENYLATION COMPLEX SUBUNIT COMPND 17 3, A-SPECIFIC RIBONUCLEASE SUBUNIT PAN3; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHAETOMIUM THERMOPHILUM; SOURCE 3 ORGANISM_TAXID: 209285; SOURCE 4 STRAIN: DSM 1495; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETMCN (PNYC); SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: CHAETOMIUM THERMOPHILUM; SOURCE 13 ORGANISM_TAXID: 209285; SOURCE 14 STRAIN: DSM 1495; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PETMCN (PNEA) KEYWDS GENE REGULATION, WD40 DOMAIN, C-TERMINAL KNOB DOMAIN, DEADENYLATION, KEYWDS 2 MRNA DECAY, PAN2-PAN3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.JONAS,E.IZAURRALDE,O.WEICHENRIEDER REVDAT 4 20-DEC-23 4D0K 1 REMARK REVDAT 3 16-JUL-14 4D0K 1 JRNL REVDAT 2 11-JUN-14 4D0K 1 JRNL REVDAT 1 04-JUN-14 4D0K 0 JRNL AUTH S.JONAS,M.CHRISTIE,D.PETER,D.BHANDARI,B.LOH,E.HUNTZINGER, JRNL AUTH 2 O.WEICHENRIEDER,E.IZAURRALDE JRNL TITL AN ASYMMETRIC PAN3 DIMER RECRUITS A SINGLE PAN2 EXONUCLEASE JRNL TITL 2 TO MEDIATE MRNA DEADENYLATION AND DECAY. JRNL REF NAT.STRUCT.MOL.BIOL. V. 21 599 2014 JRNL REFN ISSN 1545-9993 JRNL PMID 24880343 JRNL DOI 10.1038/NSMB.2837 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 60498 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3035 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.9810 - 5.2909 1.00 2824 149 0.1834 0.2095 REMARK 3 2 5.2909 - 4.2006 1.00 2703 142 0.1424 0.1827 REMARK 3 3 4.2006 - 3.6699 1.00 2680 142 0.1651 0.1949 REMARK 3 4 3.6699 - 3.3345 1.00 2658 141 0.1784 0.1773 REMARK 3 5 3.3345 - 3.0956 1.00 2642 137 0.2013 0.2096 REMARK 3 6 3.0956 - 2.9131 1.00 2640 141 0.2019 0.2393 REMARK 3 7 2.9131 - 2.7672 1.00 2630 136 0.1950 0.2091 REMARK 3 8 2.7672 - 2.6468 1.00 2615 136 0.1977 0.2137 REMARK 3 9 2.6468 - 2.5449 1.00 2641 137 0.1985 0.2573 REMARK 3 10 2.5449 - 2.4571 1.00 2605 140 0.1983 0.2294 REMARK 3 11 2.4571 - 2.3803 1.00 2639 138 0.1989 0.2552 REMARK 3 12 2.3803 - 2.3122 1.00 2586 137 0.2009 0.2474 REMARK 3 13 2.3122 - 2.2514 1.00 2607 135 0.1981 0.2480 REMARK 3 14 2.2514 - 2.1964 1.00 2604 139 0.2081 0.2626 REMARK 3 15 2.1964 - 2.1465 1.00 2633 141 0.1970 0.2363 REMARK 3 16 2.1465 - 2.1008 1.00 2576 131 0.2120 0.2466 REMARK 3 17 2.1008 - 2.0588 1.00 2593 151 0.2284 0.2382 REMARK 3 18 2.0588 - 2.0200 1.00 2591 147 0.2347 0.2490 REMARK 3 19 2.0200 - 1.9839 1.00 2607 130 0.2337 0.2776 REMARK 3 20 1.9839 - 1.9503 1.00 2557 133 0.2458 0.2786 REMARK 3 21 1.9503 - 1.9188 1.00 2624 136 0.2813 0.3095 REMARK 3 22 1.9188 - 1.8893 0.85 2208 116 0.3536 0.3606 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4433 REMARK 3 ANGLE : 0.866 6010 REMARK 3 CHIRALITY : 0.033 669 REMARK 3 PLANARITY : 0.004 773 REMARK 3 DIHEDRAL : 12.110 1649 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 0.1069 21.8283 -37.8767 REMARK 3 T TENSOR REMARK 3 T11: 0.2283 T22: 0.2580 REMARK 3 T33: 0.2144 T12: -0.0573 REMARK 3 T13: 0.0020 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 0.8721 L22: 0.8801 REMARK 3 L33: 0.7770 L12: -0.0773 REMARK 3 L13: -0.1970 L23: -0.3254 REMARK 3 S TENSOR REMARK 3 S11: -0.0405 S12: -0.1218 S13: 0.1432 REMARK 3 S21: -0.2658 S22: 0.0524 S23: -0.1118 REMARK 3 S31: 0.0269 S32: 0.0426 S33: -0.0545 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -1.7073 11.6972 -5.8863 REMARK 3 T TENSOR REMARK 3 T11: -0.0412 T22: 0.0019 REMARK 3 T33: 0.0418 T12: -0.0451 REMARK 3 T13: -0.0215 T23: -0.0549 REMARK 3 L TENSOR REMARK 3 L11: 1.7326 L22: 1.9725 REMARK 3 L33: 1.9649 L12: 0.2894 REMARK 3 L13: -0.2957 L23: -0.2313 REMARK 3 S TENSOR REMARK 3 S11: -0.0715 S12: -0.0258 S13: -0.0638 REMARK 3 S21: 0.4560 S22: 0.1461 S23: 0.2558 REMARK 3 S31: -0.5014 S32: -0.0544 S33: 0.0712 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 10.4812 20.0916 -53.1176 REMARK 3 T TENSOR REMARK 3 T11: 0.3735 T22: 0.2892 REMARK 3 T33: 0.2919 T12: -0.0227 REMARK 3 T13: 0.0809 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.7958 L22: 1.7193 REMARK 3 L33: 1.4627 L12: -0.5911 REMARK 3 L13: 0.2047 L23: -0.0760 REMARK 3 S TENSOR REMARK 3 S11: 0.0624 S12: 0.1521 S13: -0.1821 REMARK 3 S21: -0.3572 S22: -0.0479 S23: 0.0704 REMARK 3 S31: 0.2137 S32: 0.0368 S33: 0.2609 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CHAIN A RESIDUES 346-457 WERE PROBABLY REMARK 3 DEGRADED BEFORE CRYSTALLIZATION OR ARE DISORDERED. THE FOLLOWING REMARK 3 RESIDUES WERE DISORDERED, CHAIN A -2-0, 19-20, 207-214, 329-333, REMARK 3 340, CHAIN B 448-450. THE FOLLOWING RESIDUES WERE TRUNCATED AT REMARK 3 CB CHAIN A 1, 18, 21, 215, 216, 334. THE FOLLOWING RESIDUES WERE REMARK 3 REFINED WITH DOUBLE CONFORMATIONS, CHAIN A 28, 42, 77, 298, REMARK 3 CHAIN B 531. REMARK 4 REMARK 4 4D0K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-APR-14. REMARK 100 THE DEPOSITION ID IS D_1290060459. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00004 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : DYNAMICALLY BENDABLE MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60515 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 47.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04000 REMARK 200 FOR THE DATA SET : 23.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.71000 REMARK 200 FOR SHELL : 2.480 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4CZX REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M KCL, 0.1M HEPES PH7.5, 15% REMARK 280 PEG6000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.20700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.33800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.78400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.33800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.20700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.78400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 PRO A -1 REMARK 465 HIS A 0 REMARK 465 ASN A 19 REMARK 465 ASP A 20 REMARK 465 LEU A 207 REMARK 465 LYS A 208 REMARK 465 GLN A 209 REMARK 465 GLN A 210 REMARK 465 ALA A 211 REMARK 465 ALA A 212 REMARK 465 GLN A 213 REMARK 465 THR A 214 REMARK 465 PRO A 329 REMARK 465 GLU A 330 REMARK 465 GLU A 331 REMARK 465 PRO A 332 REMARK 465 ALA A 333 REMARK 465 ILE A 340 REMARK 465 SER A 346 REMARK 465 ILE A 347 REMARK 465 GLY A 348 REMARK 465 LEU A 349 REMARK 465 PRO A 350 REMARK 465 TYR A 351 REMARK 465 TYR A 352 REMARK 465 ARG A 353 REMARK 465 GLU A 354 REMARK 465 PRO A 355 REMARK 465 LEU A 356 REMARK 465 PHE A 357 REMARK 465 SER A 358 REMARK 465 ALA A 359 REMARK 465 TRP A 360 REMARK 465 PRO A 361 REMARK 465 ALA A 362 REMARK 465 ASP A 363 REMARK 465 ILE A 364 REMARK 465 ILE A 365 REMARK 465 SER A 366 REMARK 465 ASP A 367 REMARK 465 VAL A 368 REMARK 465 GLY A 369 REMARK 465 ALA A 370 REMARK 465 PRO A 371 REMARK 465 PRO A 372 REMARK 465 LEU A 373 REMARK 465 GLN A 374 REMARK 465 LEU A 375 REMARK 465 GLU A 376 REMARK 465 PRO A 377 REMARK 465 SER A 378 REMARK 465 PHE A 379 REMARK 465 VAL A 380 REMARK 465 ALA A 381 REMARK 465 THR A 382 REMARK 465 LEU A 383 REMARK 465 LYS A 384 REMARK 465 GLN A 385 REMARK 465 ALA A 386 REMARK 465 GLU A 387 REMARK 465 TRP A 388 REMARK 465 GLY A 389 REMARK 465 LEU A 390 REMARK 465 TYR A 391 REMARK 465 GLY A 392 REMARK 465 LYS A 393 REMARK 465 ASN A 394 REMARK 465 THR A 395 REMARK 465 ARG A 396 REMARK 465 ASN A 397 REMARK 465 VAL A 398 REMARK 465 ARG A 399 REMARK 465 ARG A 400 REMARK 465 ASN A 401 REMARK 465 GLN A 402 REMARK 465 VAL A 403 REMARK 465 GLU A 404 REMARK 465 ASP A 405 REMARK 465 THR A 406 REMARK 465 ARG A 407 REMARK 465 ASN A 408 REMARK 465 THR A 409 REMARK 465 ASN A 410 REMARK 465 LYS A 411 REMARK 465 GLN A 412 REMARK 465 SER A 413 REMARK 465 ASN A 414 REMARK 465 ALA A 415 REMARK 465 LEU A 416 REMARK 465 GLN A 417 REMARK 465 ALA A 418 REMARK 465 PRO A 419 REMARK 465 LYS A 420 REMARK 465 PHE A 421 REMARK 465 LEU A 422 REMARK 465 SER A 423 REMARK 465 GLU A 424 REMARK 465 ARG A 425 REMARK 465 ALA A 426 REMARK 465 ARG A 427 REMARK 465 GLU A 428 REMARK 465 SER A 429 REMARK 465 ALA A 430 REMARK 465 LEU A 431 REMARK 465 SER A 432 REMARK 465 SER A 433 REMARK 465 GLY A 434 REMARK 465 GLY A 435 REMARK 465 ASP A 436 REMARK 465 SER A 437 REMARK 465 SER A 438 REMARK 465 SER A 439 REMARK 465 ASP A 440 REMARK 465 PRO A 441 REMARK 465 GLN A 442 REMARK 465 VAL A 443 REMARK 465 ASP A 444 REMARK 465 GLN A 445 REMARK 465 GLU A 446 REMARK 465 PRO A 447 REMARK 465 GLU A 448 REMARK 465 ASP A 449 REMARK 465 PRO A 450 REMARK 465 ASN A 451 REMARK 465 GLU A 452 REMARK 465 ILE A 453 REMARK 465 GLU A 454 REMARK 465 SER A 455 REMARK 465 LEU A 456 REMARK 465 LYS A 457 REMARK 465 MET B 421 REMARK 465 GLY B 422 REMARK 465 SER B 423 REMARK 465 SER B 424 REMARK 465 HIS B 425 REMARK 465 HIS B 426 REMARK 465 HIS B 427 REMARK 465 HIS B 428 REMARK 465 HIS B 429 REMARK 465 HIS B 430 REMARK 465 SER B 431 REMARK 465 SER B 432 REMARK 465 GLY B 433 REMARK 465 THR B 434 REMARK 465 GLY B 435 REMARK 465 SER B 436 REMARK 465 GLY B 437 REMARK 465 GLU B 438 REMARK 465 ASN B 439 REMARK 465 LEU B 440 REMARK 465 TYR B 441 REMARK 465 PHE B 442 REMARK 465 GLN B 443 REMARK 465 GLY B 444 REMARK 465 HIS B 445 REMARK 465 MET B 446 REMARK 465 LEU B 447 REMARK 465 GLU B 448 REMARK 465 VAL B 449 REMARK 465 GLU B 450 REMARK 465 MET C 421 REMARK 465 GLY C 422 REMARK 465 SER C 423 REMARK 465 SER C 424 REMARK 465 HIS C 425 REMARK 465 HIS C 426 REMARK 465 HIS C 427 REMARK 465 HIS C 428 REMARK 465 HIS C 429 REMARK 465 HIS C 430 REMARK 465 SER C 431 REMARK 465 SER C 432 REMARK 465 GLY C 433 REMARK 465 THR C 434 REMARK 465 GLY C 435 REMARK 465 SER C 436 REMARK 465 GLY C 437 REMARK 465 GLU C 438 REMARK 465 ASN C 439 REMARK 465 LEU C 440 REMARK 465 TYR C 441 REMARK 465 PHE C 442 REMARK 465 GLN C 443 REMARK 465 GLY C 444 REMARK 465 HIS C 445 REMARK 465 MET C 446 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 THR A 18 OG1 CG2 REMARK 470 PHE A 21 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR A 215 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 MET A 216 CG SD CE REMARK 470 PRO A 334 CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 22 37.69 -96.27 REMARK 500 TYR A 57 -80.46 -113.36 REMARK 500 ASP A 108 67.78 -152.08 REMARK 500 THR A 115 -126.48 -108.45 REMARK 500 SER A 157 -108.34 -126.43 REMARK 500 PRO A 219 39.64 -80.75 REMARK 500 PHE A 237 81.05 -150.93 REMARK 500 PRO A 239 3.43 -68.70 REMARK 500 LEU A 240 118.57 75.60 REMARK 500 ASP A 337 54.42 -147.38 REMARK 500 ASP B 499 1.17 80.22 REMARK 500 ASN B 531 15.37 58.20 REMARK 500 ASP C 499 -4.81 83.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CZV RELATED DB: PDB REMARK 900 STRUCTURE OF THE NEUROSPORA CRASSA PAN2 WD40 DOMAIN REMARK 900 RELATED ID: 4CZW RELATED DB: PDB REMARK 900 STRUCTURE OF THE NEUROSPORA CRASSA PAN2 CATALYTIC UNIT (PROTEASE REMARK 900 AND NUCLEASE DOMAIN) REMARK 900 RELATED ID: 4CZX RELATED DB: PDB REMARK 900 COMPLEX OF NEUROSPORA CRASSA PAN2 (WD40) WITH PAN3 (C -TERM) REMARK 900 RELATED ID: 4CZY RELATED DB: PDB REMARK 900 COMPLEX OF NEUROSPORA CRASSA PAN2 (WD40-CS1) WITH PAN3 REMARK 900 (PSEUDOKINASE AND C-TERM) REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE 3 N-TERMINAL RESIDUES OF CHAIN A REMAIN FROM THE REMARK 999 PURIFICATION TAG REMARK 999 THE 27 N-TERMINAL RESIDUES OF CHAINS B AND C REMAIN FROM REMARK 999 THE PURIFICATION TAG DBREF 4D0K A 1 457 UNP G0SAK8 G0SAK8_CHATD 1 457 DBREF 4D0K B 448 555 UNP G0S0Y3 G0S0Y3_CHATD 448 555 DBREF 4D0K C 448 555 UNP G0S0Y3 G0S0Y3_CHATD 448 555 SEQADV 4D0K GLY A -2 UNP G0SAK8 EXPRESSION TAG SEQADV 4D0K PRO A -1 UNP G0SAK8 EXPRESSION TAG SEQADV 4D0K HIS A 0 UNP G0SAK8 EXPRESSION TAG SEQADV 4D0K MET B 421 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K GLY B 422 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K SER B 423 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K SER B 424 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K HIS B 425 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K HIS B 426 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K HIS B 427 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K HIS B 428 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K HIS B 429 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K HIS B 430 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K SER B 431 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K SER B 432 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K GLY B 433 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K THR B 434 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K GLY B 435 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K SER B 436 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K GLY B 437 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K GLU B 438 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K ASN B 439 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K LEU B 440 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K TYR B 441 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K PHE B 442 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K GLN B 443 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K GLY B 444 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K HIS B 445 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K MET B 446 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K LEU B 447 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K MET C 421 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K GLY C 422 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K SER C 423 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K SER C 424 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K HIS C 425 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K HIS C 426 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K HIS C 427 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K HIS C 428 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K HIS C 429 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K HIS C 430 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K SER C 431 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K SER C 432 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K GLY C 433 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K THR C 434 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K GLY C 435 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K SER C 436 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K GLY C 437 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K GLU C 438 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K ASN C 439 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K LEU C 440 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K TYR C 441 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K PHE C 442 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K GLN C 443 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K GLY C 444 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K HIS C 445 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K MET C 446 UNP G0S0Y3 EXPRESSION TAG SEQADV 4D0K LEU C 447 UNP G0S0Y3 EXPRESSION TAG SEQRES 1 A 460 GLY PRO HIS MET ASP ALA ASP TRP ASP GLU VAL THR ARG SEQRES 2 A 460 ILE ALA TYR PRO ALA PRO GLY THR ASN ASP PHE PRO ARG SEQRES 3 A 460 PRO ALA THR ALA VAL ALA PHE ASP PRO ILE ALA GLU LEU SEQRES 4 A 460 LEU TRP ALA GLY PHE ASP ARG GLY ARG VAL CYS SER PHE SEQRES 5 A 460 TYR GLY ARG ASP LEU THR ARG TYR THR ALA PHE LYS ILE SEQRES 6 A 460 GLN PRO ALA SER GLU GLY PRO VAL ARG GLN PHE LEU PHE SEQRES 7 A 460 HIS ASP LYS GLY VAL ILE VAL LEU GLY THR ARG SER VAL SEQRES 8 A 460 HIS MET ALA MET ARG ARG GLY PRO ALA LEU TRP ASN ILE SEQRES 9 A 460 ARG HIS GLU ASN MET LYS ASP LEU ARG CYS MET SER PHE SEQRES 10 A 460 THR SER LYS GLY THR GLN GLU ILE ILE VAL ALA GLY TRP SEQRES 11 A 460 GLN ASP THR MET LEU VAL ILE ASP VAL LEU LYS GLY ASP SEQRES 12 A 460 ILE ILE LYS GLN ILE PRO ALA GLN HIS HIS TYR SER ILE SEQRES 13 A 460 MET LYS LYS SER ARG TYR ILE CYS ALA ALA THR LYS THR SEQRES 14 A 460 GLY SER VAL ASP LEU ILE ASP PRO LEU SER PHE LYS ILE SEQRES 15 A 460 VAL ARG SER TRP GLN ALA HIS ALA SER TYR ILE ASN ASP SEQRES 16 A 460 MET ASP ALA GLN ASN ASP PHE ILE VAL THR CYS GLY GLY SEQRES 17 A 460 SER LEU LYS GLN GLN ALA ALA GLN THR TYR MET LEU ASP SEQRES 18 A 460 PRO TYR VAL ASN VAL PHE ASP LEU LYS ASN MET ALA SER SEQRES 19 A 460 MET LYS PRO MET PRO PHE PRO PRO LEU ALA ALA HIS VAL SEQRES 20 A 460 ARG LEU HIS PRO ARG MET LEU THR THR ALA ILE VAL THR SEQRES 21 A 460 SER GLN HIS GLY GLN MET HIS VAL VAL ASP ILE MET ASN SEQRES 22 A 460 PRO ASN SER SER THR VAL ARG TYR ALA ASN ILE SER SER SEQRES 23 A 460 TYR VAL LYS LEU PHE GLU ILE ALA PRO SER GLY GLU ALA SEQRES 24 A 460 LEU VAL ILE GLY ASP ALA ASP CYS ASN ILE HIS LEU TRP SEQRES 25 A 460 GLY SER PRO THR LYS ILE HIS PHE THR ASP MET ALA ILE SEQRES 26 A 460 PRO ILE GLU LEU PRO GLU PRO GLU GLU PRO ALA PRO VAL SEQRES 27 A 460 LEU ASP TRP SER ILE GLU THR PRO LEU SER SER ILE GLY SEQRES 28 A 460 LEU PRO TYR TYR ARG GLU PRO LEU PHE SER ALA TRP PRO SEQRES 29 A 460 ALA ASP ILE ILE SER ASP VAL GLY ALA PRO PRO LEU GLN SEQRES 30 A 460 LEU GLU PRO SER PHE VAL ALA THR LEU LYS GLN ALA GLU SEQRES 31 A 460 TRP GLY LEU TYR GLY LYS ASN THR ARG ASN VAL ARG ARG SEQRES 32 A 460 ASN GLN VAL GLU ASP THR ARG ASN THR ASN LYS GLN SER SEQRES 33 A 460 ASN ALA LEU GLN ALA PRO LYS PHE LEU SER GLU ARG ALA SEQRES 34 A 460 ARG GLU SER ALA LEU SER SER GLY GLY ASP SER SER SER SEQRES 35 A 460 ASP PRO GLN VAL ASP GLN GLU PRO GLU ASP PRO ASN GLU SEQRES 36 A 460 ILE GLU SER LEU LYS SEQRES 1 B 135 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 135 THR GLY SER GLY GLU ASN LEU TYR PHE GLN GLY HIS MET SEQRES 3 B 135 LEU GLU VAL GLU ASN GLY ARG ILE ALA ARG SER LEU MET SEQRES 4 B 135 LYS LEU LEU THR ILE LEU GLU ARG GLY ASP TYR ASP GLY SEQRES 5 B 135 VAL PRO SER TRP SER GLU THR GLY ASP ARG TYR GLN LEU SEQRES 6 B 135 LYS LEU PHE ARG ASP TYR VAL PHE HIS ARG VAL ASP ALA SEQRES 7 B 135 ASP GLY LYS PRO ASN LEU SER ILE GLY HIS MET LEU THR SEQRES 8 B 135 CYS MET SER LYS LEU GLU ALA GLY VAL ASP GLU ASN ILE SEQRES 9 B 135 LEU LEU THR SER ARG ASP ASN GLU THR VAL PHE VAL LEU SEQRES 10 B 135 SER TYR ARG GLU LEU ARG GLN MET TYR ASP ARG ALA PHE SEQRES 11 B 135 ASN GLU LEU VAL LYS SEQRES 1 C 135 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 C 135 THR GLY SER GLY GLU ASN LEU TYR PHE GLN GLY HIS MET SEQRES 3 C 135 LEU GLU VAL GLU ASN GLY ARG ILE ALA ARG SER LEU MET SEQRES 4 C 135 LYS LEU LEU THR ILE LEU GLU ARG GLY ASP TYR ASP GLY SEQRES 5 C 135 VAL PRO SER TRP SER GLU THR GLY ASP ARG TYR GLN LEU SEQRES 6 C 135 LYS LEU PHE ARG ASP TYR VAL PHE HIS ARG VAL ASP ALA SEQRES 7 C 135 ASP GLY LYS PRO ASN LEU SER ILE GLY HIS MET LEU THR SEQRES 8 C 135 CYS MET SER LYS LEU GLU ALA GLY VAL ASP GLU ASN ILE SEQRES 9 C 135 LEU LEU THR SER ARG ASP ASN GLU THR VAL PHE VAL LEU SEQRES 10 C 135 SER TYR ARG GLU LEU ARG GLN MET TYR ASP ARG ALA PHE SEQRES 11 C 135 ASN GLU LEU VAL LYS FORMUL 4 HOH *237(H2 O) HELIX 1 1 ARG B 453 ILE B 464 1 12 HELIX 2 2 TYR B 483 PHE B 493 1 11 HELIX 3 3 ILE B 506 ALA B 518 1 13 HELIX 4 4 TYR B 539 VAL B 554 1 16 HELIX 5 5 GLY C 452 ILE C 464 1 13 HELIX 6 6 GLY C 480 PHE C 493 1 14 HELIX 7 7 ILE C 506 ALA C 518 1 13 HELIX 8 8 TYR C 539 VAL C 554 1 16 SHEET 1 AA 4 ASP A 6 ALA A 12 0 SHEET 2 AA 4 ASN A 305 GLY A 310 -1 O ILE A 306 N ILE A 11 SHEET 3 AA 4 LEU A 297 ASP A 301 -1 O LEU A 297 N TRP A 309 SHEET 4 AA 4 VAL A 285 ILE A 290 -1 N LYS A 286 O GLY A 300 SHEET 1 AB 4 ALA A 27 PHE A 30 0 SHEET 2 AB 4 LEU A 36 GLY A 40 -1 O TRP A 38 N ALA A 29 SHEET 3 AB 4 ARG A 45 TYR A 50 -1 O CYS A 47 N ALA A 39 SHEET 4 AB 4 THR A 55 LYS A 61 -1 O THR A 55 N TYR A 50 SHEET 1 AC 4 GLN A 72 HIS A 76 0 SHEET 2 AC 4 GLY A 79 LEU A 83 -1 O GLY A 79 N HIS A 76 SHEET 3 AC 4 SER A 87 ALA A 91 -1 O HIS A 89 N VAL A 82 SHEET 4 AC 4 ALA A 97 ARG A 102 -1 N LEU A 98 O MET A 90 SHEET 1 AD 4 LEU A 109 PHE A 114 0 SHEET 2 AD 4 GLU A 121 GLY A 126 -1 O ILE A 123 N SER A 113 SHEET 3 AD 4 THR A 130 ASP A 135 -1 O LEU A 132 N VAL A 124 SHEET 4 AD 4 ASP A 140 PRO A 146 -1 O ASP A 140 N ASP A 135 SHEET 1 AE 4 TYR A 151 LYS A 156 0 SHEET 2 AE 4 ILE A 160 THR A 164 -1 O CYS A 161 N LYS A 155 SHEET 3 AE 4 SER A 168 ILE A 172 -1 O SER A 168 N THR A 164 SHEET 4 AE 4 ILE A 179 GLN A 184 -1 N VAL A 180 O LEU A 171 SHEET 1 AF 4 TYR A 189 GLN A 196 0 SHEET 2 AF 4 PHE A 199 GLY A 205 -1 O PHE A 199 N GLN A 196 SHEET 3 AF 4 TYR A 220 ASP A 225 -1 O ASN A 222 N THR A 202 SHEET 4 AF 4 ALA A 230 MET A 232 -1 O ALA A 230 N ASP A 225 SHEET 1 AG 4 HIS A 243 LEU A 246 0 SHEET 2 AG 4 THR A 253 THR A 257 -1 O ILE A 255 N ARG A 245 SHEET 3 AG 4 GLN A 262 ASP A 267 -1 O HIS A 264 N VAL A 256 SHEET 4 AG 4 THR A 275 TYR A 278 -1 N THR A 275 O VAL A 265 SHEET 1 AI 2 TYR A 220 ASP A 225 0 SHEET 2 AI 2 MET A 235 PRO A 236 -1 N MET A 235 O VAL A 221 SHEET 1 BA 2 ASN B 523 THR B 527 0 SHEET 2 BA 2 VAL B 534 SER B 538 -1 O PHE B 535 N LEU B 526 SHEET 1 CA 2 ASN C 523 THR C 527 0 SHEET 2 CA 2 VAL C 534 SER C 538 -1 O PHE C 535 N LEU C 526 CISPEP 1 TYR A 13 PRO A 14 0 -0.74 CRYST1 72.414 93.568 110.676 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013809 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010687 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009035 0.00000 MTRIX1 1 -0.253700 -0.687200 0.680700 52.86560 1 MTRIX2 1 -0.683400 -0.370800 -0.628900 3.90860 1 MTRIX3 1 0.684600 -0.624800 -0.375500 -53.61110 1