HEADER CELL CYCLE 29-APR-14 4D0N TITLE AKAP13 (AKAP-LBC) RHOGEF DOMAIN IN COMPLEX WITH RHOA COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSFORMING PROTEIN RHOA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-184; COMPND 5 SYNONYM: RHOA, RHO CDNA CLONE 12, H12; COMPND 6 EC: 3.6.5.2; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: A-KINASE ANCHOR PROTEIN 13; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: RHOGEF DOMAIN, RESIDUES 1968-2338; COMPND 12 SYNONYM: AKAP13, AKAP-13, AKAP-LBC, BREAST CANCER NUCLEAR COMPND 13 RECEPTOR-BINDING AUXILIARY PROTEIN, GUANINE NUCLEOTIDE EXCHANGE COMPND 14 FACTOR LBC, HUMAN THYROID-ANCHORING PROTEIN 31, LYMPHOID BLAST COMPND 15 CRISIS ONCOGENE, LBC ONCOGENE, NON-ONCOGENIC RHO GTPASE-SPECIFIC COMPND 16 GTP EXCHANGE FACTOR, PROTEIN KINASE A-ANCHORING PROTEIN 13, COMPND 17 PRKA13, P47; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS CELL CYCLE, AKAP13, LBC, AKAP-LBC, GEF, RHOGEF, DH DOMAIN, PH DOMAIN EXPDTA X-RAY DIFFRACTION AUTHOR K.R.ABDUL AZEEZ,L.SHRESTHA,T.KROJER,C.ALLERSTON,F.VON DELFT, AUTHOR 2 C.BOUNTRA,C.ARROWSMITH,A.M.EDWARDS,S.KNAPP,E.KLUSSMANN,J.M.ELKINS REVDAT 3 26-NOV-14 4D0N 1 JRNL REVDAT 2 17-SEP-14 4D0N 1 JRNL REVDAT 1 21-MAY-14 4D0N 0 JRNL AUTH K.R.ABDUL AZEEZ,S.KNAPP,J.M.P.FERNANDES,E.KLUSSMANN, JRNL AUTH 2 J.M.ELKINS JRNL TITL THE CRYSTAL STRUCTURE OF THE RHOA : AKAP-LBC DH-PH DOMAIN JRNL TITL 2 COMPLEX. JRNL REF BIOCHEM.J. V. 464 231 2014 JRNL REFN ISSN 0264-6021 JRNL PMID 25186459 JRNL DOI 10.1042/BJ20140606 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU, REMARK 3 STEINER,NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 69.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 99.07 REMARK 3 NUMBER OF REFLECTIONS : 46509 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.21098 REMARK 3 R VALUE (WORKING SET) : 0.20943 REMARK 3 FREE R VALUE : 0.23946 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT : 2476 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.100 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.155 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3237 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.368 REMARK 3 BIN FREE R VALUE SET COUNT : 172 REMARK 3 BIN FREE R VALUE : 0.392 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4373 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 57 REMARK 3 SOLVENT ATOMS : 183 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.162 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.39 REMARK 3 B22 (A**2) : 0.16 REMARK 3 B33 (A**2) : 1.22 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.182 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.162 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.158 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.293 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4496 ; 0.006 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4353 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6063 ; 1.070 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10020 ; 0.739 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 552 ; 5.327 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 201 ;35.880 ;24.677 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 857 ;14.478 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;17.898 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 694 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4970 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 976 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2202 ; 1.045 ; 3.146 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2201 ; 1.044 ; 3.146 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2750 ; 1.756 ; 4.711 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2294 ; 1.161 ; 3.321 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 4D0N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-APR-14. REMARK 100 THE PDBE ID CODE IS EBI-60341. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49042 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.10 REMARK 200 RESOLUTION RANGE LOW (A) : 82.32 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.4 REMARK 200 R MERGE (I) : 0.06 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.20 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.9 REMARK 200 R MERGE FOR SHELL (I) : 0.45 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.60 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULPHATE, 0.1 M REMARK 280 BIS-TRIS PH 5.5, 25% (W/V) PEG 3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.16000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.41000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.30500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.41000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.16000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.30500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ARG A 182 REMARK 465 ARG A 183 REMARK 465 GLY A 184 REMARK 465 ARG B 2341 REMARK 465 ASP B 2342 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 27 CE NZ REMARK 470 ASP A 28 CG OD1 OD2 REMARK 470 GLN A 29 CG CD OE1 NE2 REMARK 470 GLU A 32 CG CD OE1 OE2 REMARK 470 LYS A 51 CE NZ REMARK 470 LYS A 135 NZ REMARK 470 LYS B1973 CG CD CE NZ REMARK 470 LYS B1987 CE NZ REMARK 470 LYS B1990 CG CD CE NZ REMARK 470 LYS B1993 CG CD CE NZ REMARK 470 LYS B1994 CE NZ REMARK 470 GLN B2026 CD OE1 NE2 REMARK 470 LYS B2064 NZ REMARK 470 LYS B2065 CE NZ REMARK 470 LYS B2071 CG CD CE NZ REMARK 470 LYS B2074 NZ REMARK 470 LYS B2079 CE NZ REMARK 470 LYS B2131 CE NZ REMARK 470 SER B2136 OG REMARK 470 LYS B2169 CE NZ REMARK 470 GLN B2224 CG CD OE1 NE2 REMARK 470 LYS B2232 CD CE NZ REMARK 470 ARG B2233 NE CZ NH1 NH2 REMARK 470 LYS B2269 CD CE NZ REMARK 470 LYS B2272 CE NZ REMARK 470 GLN B2280 CG CD OE1 NE2 REMARK 470 LYS B2288 CE NZ REMARK 470 SER B2320 OG REMARK 470 GLN B2330 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2034 O HOH B 3556 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 31 92.27 -69.60 REMARK 500 GLU A 40 -78.29 -86.50 REMARK 500 VAL B2023 -62.57 -100.85 REMARK 500 ASP B2070 -143.44 69.18 REMARK 500 SER B2135 -44.56 -139.00 REMARK 500 ARG B2140 -18.46 -45.47 REMARK 500 ARG B2233 70.12 -104.22 REMARK 500 LEU B2278 89.95 -155.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A1182 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B3341 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B3342 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B3343 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1183 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B3344 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1184 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4D0O RELATED DB: PDB REMARK 900 AKAP13 (AKAP-LBC) DH DOMAIN DBREF 4D0N A 1 184 UNP P61586 RHOA_HUMAN 1 184 DBREF 4D0N B 1972 2342 UNP Q12802 AKP13_HUMAN 1968 2338 SEQADV 4D0N SER A 0 UNP P61586 EXPRESSION TAG SEQADV 4D0N SER B 1970 UNP Q12802 EXPRESSION TAG SEQADV 4D0N MET B 1971 UNP Q12802 EXPRESSION TAG SEQRES 1 A 185 SER MET ALA ALA ILE ARG LYS LYS LEU VAL ILE VAL GLY SEQRES 2 A 185 ASP GLY ALA CYS GLY LYS THR CYS LEU LEU ILE VAL PHE SEQRES 3 A 185 SER LYS ASP GLN PHE PRO GLU VAL TYR VAL PRO THR VAL SEQRES 4 A 185 PHE GLU ASN TYR VAL ALA ASP ILE GLU VAL ASP GLY LYS SEQRES 5 A 185 GLN VAL GLU LEU ALA LEU TRP ASP THR ALA GLY GLN GLU SEQRES 6 A 185 ASP TYR ASP ARG LEU ARG PRO LEU SER TYR PRO ASP THR SEQRES 7 A 185 ASP VAL ILE LEU MET CYS PHE SER ILE ASP SER PRO ASP SEQRES 8 A 185 SER LEU GLU ASN ILE PRO GLU LYS TRP THR PRO GLU VAL SEQRES 9 A 185 LYS HIS PHE CYS PRO ASN VAL PRO ILE ILE LEU VAL GLY SEQRES 10 A 185 ASN LYS LYS ASP LEU ARG ASN ASP GLU HIS THR ARG ARG SEQRES 11 A 185 GLU LEU ALA LYS MET LYS GLN GLU PRO VAL LYS PRO GLU SEQRES 12 A 185 GLU GLY ARG ASP MET ALA ASN ARG ILE GLY ALA PHE GLY SEQRES 13 A 185 TYR MET GLU CYS SER ALA LYS THR LYS ASP GLY VAL ARG SEQRES 14 A 185 GLU VAL PHE GLU MET ALA THR ARG ALA ALA LEU GLN ALA SEQRES 15 A 185 ARG ARG GLY SEQRES 1 B 373 SER MET SER LYS GLN LEU GLU ALA GLU SER TRP SER ARG SEQRES 2 B 373 ILE ILE ASP SER LYS PHE LEU LYS GLN GLN LYS LYS ASP SEQRES 3 B 373 VAL VAL LYS ARG GLN GLU VAL ILE TYR GLU LEU MET GLN SEQRES 4 B 373 THR GLU PHE HIS HIS VAL ARG THR LEU LYS ILE MET SER SEQRES 5 B 373 GLY VAL TYR SER GLN GLY MET MET ALA ASP LEU LEU PHE SEQRES 6 B 373 GLU GLN GLN MET VAL GLU LYS LEU PHE PRO CYS LEU ASP SEQRES 7 B 373 GLU LEU ILE SER ILE HIS SER GLN PHE PHE GLN ARG ILE SEQRES 8 B 373 LEU GLU ARG LYS LYS GLU SER LEU VAL ASP LYS SER GLU SEQRES 9 B 373 LYS ASN PHE LEU ILE LYS ARG ILE GLY ASP VAL LEU VAL SEQRES 10 B 373 ASN GLN PHE SER GLY GLU ASN ALA GLU ARG LEU LYS LYS SEQRES 11 B 373 THR TYR GLY LYS PHE CYS GLY GLN HIS ASN GLN SER VAL SEQRES 12 B 373 ASN TYR PHE LYS ASP LEU TYR ALA LYS ASP LYS ARG PHE SEQRES 13 B 373 GLN ALA PHE VAL LYS LYS LYS MET SER SER SER VAL VAL SEQRES 14 B 373 ARG ARG LEU GLY ILE PRO GLU CYS ILE LEU LEU VAL THR SEQRES 15 B 373 GLN ARG ILE THR LYS TYR PRO VAL LEU PHE GLN ARG ILE SEQRES 16 B 373 LEU GLN CYS THR LYS ASP ASN GLU VAL GLU GLN GLU ASP SEQRES 17 B 373 LEU ALA GLN SER LEU SER LEU VAL LYS ASP VAL ILE GLY SEQRES 18 B 373 ALA VAL ASP SER LYS VAL ALA SER TYR GLU LYS LYS VAL SEQRES 19 B 373 ARG LEU ASN GLU ILE TYR THR LYS THR ASP SER LYS SER SEQRES 20 B 373 ILE MET ARG MET LYS SER GLY GLN MET PHE ALA LYS GLU SEQRES 21 B 373 ASP LEU LYS ARG LYS LYS LEU VAL ARG ASP GLY SER VAL SEQRES 22 B 373 PHE LEU LYS ASN ALA ALA GLY ARG LEU LYS GLU VAL GLN SEQRES 23 B 373 ALA VAL LEU LEU THR ASP ILE LEU VAL PHE LEU GLN GLU SEQRES 24 B 373 LYS ASP GLN LYS TYR ILE PHE ALA SER LEU ASP GLN LYS SEQRES 25 B 373 SER THR VAL ILE SER LEU LYS LYS LEU ILE VAL ARG GLU SEQRES 26 B 373 VAL ALA HIS GLU GLU LYS GLY LEU PHE LEU ILE SER MET SEQRES 27 B 373 GLY MET THR ASP PRO GLU MET VAL GLU VAL HIS ALA SER SEQRES 28 B 373 SER LYS GLU GLU ARG ASN SER TRP ILE GLN ILE ILE GLN SEQRES 29 B 373 ASP THR ILE ASN THR LEU ASN ARG ASP HET GDP A1182 28 HET SO4 B3341 5 HET SO4 B3342 5 HET SO4 B3343 5 HET SO4 A1183 5 HET SO4 B3344 5 HET EDO A1184 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO C2 H6 O2 FORMUL 4 GDP C10 H15 N5 O11 P2 FORMUL 5 SO4 5(O4 S 2-) FORMUL 6 HOH *183(H2 O) HELIX 1 1 GLY A 17 LYS A 27 1 11 HELIX 2 2 LEU A 69 TYR A 74 5 6 HELIX 3 3 SER A 88 CYS A 107 1 20 HELIX 4 4 LYS A 118 ARG A 122 5 5 HELIX 5 5 ASP A 124 LYS A 133 1 10 HELIX 6 6 LYS A 140 GLY A 152 1 13 HELIX 7 7 GLY A 166 GLN A 180 1 15 HELIX 8 8 SER B 1970 LEU B 1975 1 6 HELIX 9 9 SER B 1979 ILE B 1984 1 6 HELIX 10 10 ASP B 1985 GLN B 1991 1 7 HELIX 11 11 LYS B 1993 VAL B 2023 1 31 HELIX 12 12 VAL B 2023 LEU B 2032 1 10 HELIX 13 13 GLU B 2035 PHE B 2043 1 9 HELIX 14 14 CYS B 2045 GLU B 2066 1 22 HELIX 15 15 ILE B 2081 PHE B 2089 1 9 HELIX 16 16 SER B 2090 SER B 2136 1 47 HELIX 17 17 VAL B 2138 LEU B 2141 5 4 HELIX 18 18 GLY B 2142 ILE B 2154 1 13 HELIX 19 19 LYS B 2156 THR B 2168 1 13 HELIX 20 20 ASN B 2171 THR B 2212 1 42 HELIX 21 21 GLU B 2229 LEU B 2231 5 3 HELIX 22 22 SER B 2321 ASN B 2340 1 20 SHEET 1 AA 6 TYR A 42 VAL A 48 0 SHEET 2 AA 6 LYS A 51 ASP A 59 -1 O LYS A 51 N VAL A 48 SHEET 3 AA 6 ARG A 5 GLY A 12 1 O LYS A 6 N ALA A 56 SHEET 4 AA 6 VAL A 79 SER A 85 1 O VAL A 79 N VAL A 9 SHEET 5 AA 6 ILE A 112 ASN A 117 1 O ILE A 113 N MET A 82 SHEET 6 AA 6 GLY A 155 GLU A 158 1 O GLY A 155 N LEU A 114 SHEET 1 BA 2 ILE B2217 ARG B2219 0 SHEET 2 BA 2 MET B2225 ALA B2227 -1 O PHE B2226 N MET B2218 SHEET 1 BB 2 LYS B2272 PHE B2275 0 SHEET 2 BB 2 ILE B2262 LYS B2269 1 O GLN B2267 N ILE B2274 SHEET 1 BC 2 VAL B2284 SER B2286 0 SHEET 2 BC 2 ILE B2262 LYS B2269 -1 O LEU B2263 N ILE B2285 SHEET 1 BD 7 LEU B2290 GLU B2294 0 SHEET 2 BD 7 GLY B2301 SER B2306 -1 O PHE B2303 N ARG B2293 SHEET 3 BD 7 MET B2314 HIS B2318 -1 O VAL B2315 N LEU B2304 SHEET 4 BD 7 LEU B2236 LYS B2245 -1 O PHE B2243 N HIS B2318 SHEET 5 BD 7 LEU B2251 LEU B2259 -1 O LYS B2252 N LEU B2244 SHEET 6 BD 7 ILE B2262 LYS B2269 -1 O ILE B2262 N LEU B2259 SHEET 7 BD 7 LYS B2272 PHE B2275 1 O LYS B2272 N LYS B2269 SHEET 1 BE 7 LEU B2290 GLU B2294 0 SHEET 2 BE 7 GLY B2301 SER B2306 -1 O PHE B2303 N ARG B2293 SHEET 3 BE 7 MET B2314 HIS B2318 -1 O VAL B2315 N LEU B2304 SHEET 4 BE 7 LEU B2236 LYS B2245 -1 O PHE B2243 N HIS B2318 SHEET 5 BE 7 LEU B2251 LEU B2259 -1 O LYS B2252 N LEU B2244 SHEET 6 BE 7 ILE B2262 LYS B2269 -1 O ILE B2262 N LEU B2259 SHEET 7 BE 7 VAL B2284 SER B2286 -1 O ILE B2285 N LEU B2263 CISPEP 1 ALA A 3 ILE A 4 0 0.25 CISPEP 2 LYS B 2232 ARG B 2233 0 1.29 SITE 1 AC1 17 ALA A 15 CYS A 16 GLY A 17 LYS A 18 SITE 2 AC1 17 THR A 19 CYS A 20 ALA A 61 LYS A 118 SITE 3 AC1 17 ASP A 120 LEU A 121 SER A 160 ALA A 161 SITE 4 AC1 17 LYS A 162 HOH A2007 HOH A2030 HOH A2074 SITE 5 AC1 17 SO4 B3342 SITE 1 AC2 4 GLN B2055 ARG B2059 ASN B2087 ASN B2093 SITE 1 AC3 4 GDP A1182 LYS B1998 ARG B2163 GLN B2166 SITE 1 AC4 2 LYS B1993 LYS B1994 SITE 1 AC5 2 ARG A 68 SER B2194 SITE 1 AC6 3 VAL B2138 ARG B2139 ARG B2140 SITE 1 AC7 7 LYS A 7 LEU A 72 PRO A 75 HOH A2038 SITE 2 AC7 7 HOH A2076 HOH A3577 HIS B2108 CRYST1 82.320 86.610 116.820 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012148 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011546 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008560 0.00000