HEADER CELL CYCLE 29-APR-14 4D0O TITLE AKAP13 (AKAP-LBC) DH DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: A-KINASE ANCHOR PROTEIN 13; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RHOGEF DOMAIN, RESIDUES 1972-2207; COMPND 5 SYNONYM: AKAP-13, AKAP-LBC, BREAST CANCER NUCLEAR RECEPTOR-BINDING COMPND 6 AUXILIARY PROTEIN, GUANINE NUCLEOTIDE EXCHANGE FACTOR LBC, HUMAN COMPND 7 THYROID-ANCHORING PROTEIN 31, LYMPHOID BLAST CRISIS ONCOGENE, LBC COMPND 8 ONCOGENE, NON-ONCOGENIC RHO GTPASE-SPECIFIC GTP EXCHANGE FACTOR, COMPND 9 PROTEIN KINASE A-ANCHORING PROTEIN 13, PRKA13, P47, AKAP13; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS CELL CYCLE, AKAP-LBC, GEF, RHOGEF, PH DOMAIN EXPDTA X-RAY DIFFRACTION AUTHOR K.R.ABDUL AZEEZ,L.SHRESTHA,T.KROJER,C.ALLERSTON,F.VON DELFT, AUTHOR 2 C.BOUNTRA,C.ARROWSMITH,A.M.EDWARDS,S.KNAPP,E.KLUSSMANN,J.M.ELKINS REVDAT 3 26-NOV-14 4D0O 1 JRNL REVDAT 2 17-SEP-14 4D0O 1 JRNL REVDAT 1 21-MAY-14 4D0O 0 JRNL AUTH K.R.ABDUL AZEEZ,S.KNAPP,J.M.P.FERNANDES,E.KLUSSMANN, JRNL AUTH 2 J.M.ELKINS JRNL TITL THE CRYSTAL STRUCTURE OF THE RHOA : AKAP-LBC DH-PH DOMAIN JRNL TITL 2 COMPLEX. JRNL REF BIOCHEM.J. V. 464 231 2014 JRNL REFN ISSN 0264-6021 JRNL PMID 25186459 JRNL DOI 10.1042/BJ20140606 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU, REMARK 3 STEINER,NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 71.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 99.87 REMARK 3 NUMBER OF REFLECTIONS : 13897 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.23969 REMARK 3 R VALUE (WORKING SET) : 0.23641 REMARK 3 FREE R VALUE : 0.30849 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.9 REMARK 3 FREE R VALUE TEST SET COUNT : 711 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.750 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.822 REMARK 3 REFLECTION IN BIN (WORKING SET) : 984 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.324 REMARK 3 BIN FREE R VALUE SET COUNT : 53 REMARK 3 BIN FREE R VALUE : 0.359 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3692 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.658 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.50 REMARK 3 B22 (A**2) : 1.28 REMARK 3 B33 (A**2) : 2.22 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.445 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.361 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 41.167 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.918 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.840 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3751 ; 0.005 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3567 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5059 ; 0.887 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8138 ; 0.774 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 471 ; 5.140 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 166 ;35.316 ;24.699 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 673 ;16.117 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;17.640 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 586 ; 0.048 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4258 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 879 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1893 ; 0.658 ; 2.370 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1892 ; 0.658 ; 2.369 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2361 ; 1.193 ; 3.552 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1858 ; 0.567 ; 2.383 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1960 A 2211 REMARK 3 ORIGIN FOR THE GROUP (A): -15.0040 6.8250 21.2210 REMARK 3 T TENSOR REMARK 3 T11: 0.4108 T22: 0.1142 REMARK 3 T33: 0.2142 T12: -0.0715 REMARK 3 T13: -0.0287 T23: -0.0484 REMARK 3 L TENSOR REMARK 3 L11: 1.8865 L22: 3.0310 REMARK 3 L33: 2.2042 L12: 0.0859 REMARK 3 L13: -0.7730 L23: 0.4859 REMARK 3 S TENSOR REMARK 3 S11: -0.1450 S12: 0.0756 S13: 0.0660 REMARK 3 S21: -0.0035 S22: 0.2397 S23: -0.2322 REMARK 3 S31: -0.3503 S32: 0.1363 S33: -0.0947 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1960 B 2211 REMARK 3 ORIGIN FOR THE GROUP (A): -23.4100 -15.7160 15.1430 REMARK 3 T TENSOR REMARK 3 T11: 0.2746 T22: 0.0272 REMARK 3 T33: 0.1476 T12: 0.0016 REMARK 3 T13: -0.0337 T23: -0.0323 REMARK 3 L TENSOR REMARK 3 L11: 2.8588 L22: 2.0519 REMARK 3 L33: 2.6531 L12: -0.6233 REMARK 3 L13: -1.1522 L23: 0.5663 REMARK 3 S TENSOR REMARK 3 S11: -0.0301 S12: -0.1653 S13: 0.1413 REMARK 3 S21: 0.1376 S22: -0.0262 S23: 0.1846 REMARK 3 S31: -0.2157 S32: -0.1097 S33: 0.0563 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 4D0O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-APR-14. REMARK 100 THE PDBE ID CODE IS EBI-60486. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL (PILATUS 6M) REMARK 200 DETECTOR MANUFACTURER : DECTRIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14660 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.75 REMARK 200 RESOLUTION RANGE LOW (A) : 42.13 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.5 REMARK 200 R MERGE (I) : 0.21 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.20 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.5 REMARK 200 R MERGE FOR SHELL (I) : 1.18 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.10 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULPHATE, 0.1 M REMARK 280 BIS-TRIS PH 5.5, 25% (W/V) PEG 3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.06500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.50000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.42000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.50000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.06500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.42000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 2071 REMARK 465 SER A 2072 REMARK 465 GLU A 2073 REMARK 465 LEU A 2205 REMARK 465 ASN A 2206 REMARK 465 GLU A 2207 REMARK 465 ILE A 2208 REMARK 465 TYR A 2209 REMARK 465 THR A 2210 REMARK 465 LYS A 2211 REMARK 465 ILE B 2208 REMARK 465 TYR B 2209 REMARK 465 THR B 2210 REMARK 465 LYS B 2211 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A1968 CG CD OE1 OE2 REMARK 470 GLU A1978 CD OE1 OE2 REMARK 470 ARG A1982 CG CD NE CZ NH1 NH2 REMARK 470 LYS A1987 NZ REMARK 470 LYS A1990 CG CD CE NZ REMARK 470 LYS A1993 CG CD CE NZ REMARK 470 LYS A1994 CG CD CE NZ REMARK 470 ASP A1995 CG OD1 OD2 REMARK 470 LYS A1998 CE NZ REMARK 470 GLU A2005 CD OE1 OE2 REMARK 470 GLU A2035 CG CD OE1 OE2 REMARK 470 LYS A2041 CG CD CE NZ REMARK 470 GLN A2055 CG CD OE1 NE2 REMARK 470 LYS A2065 CD CE NZ REMARK 470 ASP A2070 CG OD1 OD2 REMARK 470 LYS A2074 CG CD CE NZ REMARK 470 LYS A2079 CE NZ REMARK 470 LYS A2099 CD CE NZ REMARK 470 LYS A2123 CD CE NZ REMARK 470 ARG A2124 NE CZ NH1 NH2 REMARK 470 LYS A2131 CE NZ REMARK 470 ARG A2139 CG CD NE CZ NH1 NH2 REMARK 470 ARG A2140 CG CD NE CZ NH1 NH2 REMARK 470 LYS A2169 CG CD CE NZ REMARK 470 ASP A2170 CG OD1 OD2 REMARK 470 GLU A2172 CG CD OE1 OE2 REMARK 470 LYS A2195 CG CD CE NZ REMARK 470 LYS A2201 CD CE NZ REMARK 470 LYS A2202 CD CE NZ REMARK 470 ARG A2204 CZ NH1 NH2 REMARK 470 GLU B1968 CG CD OE1 OE2 REMARK 470 GLU B1978 CD OE1 OE2 REMARK 470 ARG B1982 NE CZ NH1 NH2 REMARK 470 ASP B1985 CG OD1 OD2 REMARK 470 LYS B1987 CG CD CE NZ REMARK 470 LYS B1990 CG CD CE NZ REMARK 470 GLN B1991 CD OE1 NE2 REMARK 470 LYS B1993 CG CD CE NZ REMARK 470 LYS B1994 CG CD CE NZ REMARK 470 ASP B1995 CG OD1 OD2 REMARK 470 GLN B2026 CD OE1 NE2 REMARK 470 LYS B2041 CG CD CE NZ REMARK 470 ASP B2070 CG OD1 OD2 REMARK 470 LYS B2071 CG CD CE NZ REMARK 470 GLU B2073 CG CD OE1 OE2 REMARK 470 LYS B2074 CG CD CE NZ REMARK 470 LYS B2079 CE NZ REMARK 470 ASP B2117 CG OD1 OD2 REMARK 470 LYS B2121 CD CE NZ REMARK 470 LYS B2123 CD CE NZ REMARK 470 LYS B2130 CE NZ REMARK 470 LYS B2131 CE NZ REMARK 470 SER B2136 OG REMARK 470 ARG B2139 CD NE CZ NH1 NH2 REMARK 470 ARG B2140 CG CD NE CZ NH1 NH2 REMARK 470 LYS B2169 CE NZ REMARK 470 LYS B2195 CG CD CE NZ REMARK 470 LYS B2201 CG CD CE NZ REMARK 470 LYS B2202 CG CD CE NZ REMARK 470 ARG B2204 CG CD NE CZ NH1 NH2 REMARK 470 LEU B2205 CG CD1 CD2 REMARK 470 ASN B2206 CG OD1 ND2 REMARK 470 GLU B2207 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A2023 -62.98 -100.08 REMARK 500 HIS A2108 -73.03 -23.89 REMARK 500 LYS A2121 -63.58 -98.14 REMARK 500 ARG A2139 -86.06 -55.02 REMARK 500 LEU A2141 104.41 -59.77 REMARK 500 ASN B1969 -59.92 19.28 REMARK 500 VAL B2023 -62.94 -100.11 REMARK 500 HIS B2108 -73.22 -24.38 REMARK 500 LYS B2121 -64.06 -97.49 REMARK 500 ARG B2139 -85.67 -55.15 REMARK 500 LEU B2141 104.32 -59.80 REMARK 500 ASN B2171 88.43 -150.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 2139 ARG A 2140 147.60 REMARK 500 ARG B 2139 ARG B 2140 146.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4D0N RELATED DB: PDB REMARK 900 AKAP13 (AKAP-LBC) RHOGEF DOMAIN IN COMPLEX WITH RHOA DBREF 4D0O A 1976 2211 UNP Q12802 AKP13_HUMAN 1972 2207 DBREF 4D0O B 1976 2211 UNP Q12802 AKP13_HUMAN 1972 2207 SEQADV 4D0O GLU A 1968 UNP Q12802 EXPRESSION TAG SEQADV 4D0O ASN A 1969 UNP Q12802 EXPRESSION TAG SEQADV 4D0O LEU A 1970 UNP Q12802 EXPRESSION TAG SEQADV 4D0O TYR A 1971 UNP Q12802 EXPRESSION TAG SEQADV 4D0O PHE A 1972 UNP Q12802 EXPRESSION TAG SEQADV 4D0O GLN A 1973 UNP Q12802 EXPRESSION TAG SEQADV 4D0O SER A 1974 UNP Q12802 EXPRESSION TAG SEQADV 4D0O MET A 1975 UNP Q12802 EXPRESSION TAG SEQADV 4D0O GLU B 1968 UNP Q12802 EXPRESSION TAG SEQADV 4D0O ASN B 1969 UNP Q12802 EXPRESSION TAG SEQADV 4D0O LEU B 1970 UNP Q12802 EXPRESSION TAG SEQADV 4D0O TYR B 1971 UNP Q12802 EXPRESSION TAG SEQADV 4D0O PHE B 1972 UNP Q12802 EXPRESSION TAG SEQADV 4D0O GLN B 1973 UNP Q12802 EXPRESSION TAG SEQADV 4D0O SER B 1974 UNP Q12802 EXPRESSION TAG SEQADV 4D0O MET B 1975 UNP Q12802 EXPRESSION TAG SEQRES 1 A 244 GLU ASN LEU TYR PHE GLN SER MET GLU ALA GLU SER TRP SEQRES 2 A 244 SER ARG ILE ILE ASP SER LYS PHE LEU LYS GLN GLN LYS SEQRES 3 A 244 LYS ASP VAL VAL LYS ARG GLN GLU VAL ILE TYR GLU LEU SEQRES 4 A 244 MET GLN THR GLU PHE HIS HIS VAL ARG THR LEU LYS ILE SEQRES 5 A 244 MET SER GLY VAL TYR SER GLN GLY MET MET ALA ASP LEU SEQRES 6 A 244 LEU PHE GLU GLN GLN MET VAL GLU LYS LEU PHE PRO CYS SEQRES 7 A 244 LEU ASP GLU LEU ILE SER ILE HIS SER GLN PHE PHE GLN SEQRES 8 A 244 ARG ILE LEU GLU ARG LYS LYS GLU SER LEU VAL ASP LYS SEQRES 9 A 244 SER GLU LYS ASN PHE LEU ILE LYS ARG ILE GLY ASP VAL SEQRES 10 A 244 LEU VAL ASN GLN PHE SER GLY GLU ASN ALA GLU ARG LEU SEQRES 11 A 244 LYS LYS THR TYR GLY LYS PHE CYS GLY GLN HIS ASN GLN SEQRES 12 A 244 SER VAL ASN TYR PHE LYS ASP LEU TYR ALA LYS ASP LYS SEQRES 13 A 244 ARG PHE GLN ALA PHE VAL LYS LYS LYS MET SER SER SER SEQRES 14 A 244 VAL VAL ARG ARG LEU GLY ILE PRO GLU CYS ILE LEU LEU SEQRES 15 A 244 VAL THR GLN ARG ILE THR LYS TYR PRO VAL LEU PHE GLN SEQRES 16 A 244 ARG ILE LEU GLN CYS THR LYS ASP ASN GLU VAL GLU GLN SEQRES 17 A 244 GLU ASP LEU ALA GLN SER LEU SER LEU VAL LYS ASP VAL SEQRES 18 A 244 ILE GLY ALA VAL ASP SER LYS VAL ALA SER TYR GLU LYS SEQRES 19 A 244 LYS VAL ARG LEU ASN GLU ILE TYR THR LYS SEQRES 1 B 244 GLU ASN LEU TYR PHE GLN SER MET GLU ALA GLU SER TRP SEQRES 2 B 244 SER ARG ILE ILE ASP SER LYS PHE LEU LYS GLN GLN LYS SEQRES 3 B 244 LYS ASP VAL VAL LYS ARG GLN GLU VAL ILE TYR GLU LEU SEQRES 4 B 244 MET GLN THR GLU PHE HIS HIS VAL ARG THR LEU LYS ILE SEQRES 5 B 244 MET SER GLY VAL TYR SER GLN GLY MET MET ALA ASP LEU SEQRES 6 B 244 LEU PHE GLU GLN GLN MET VAL GLU LYS LEU PHE PRO CYS SEQRES 7 B 244 LEU ASP GLU LEU ILE SER ILE HIS SER GLN PHE PHE GLN SEQRES 8 B 244 ARG ILE LEU GLU ARG LYS LYS GLU SER LEU VAL ASP LYS SEQRES 9 B 244 SER GLU LYS ASN PHE LEU ILE LYS ARG ILE GLY ASP VAL SEQRES 10 B 244 LEU VAL ASN GLN PHE SER GLY GLU ASN ALA GLU ARG LEU SEQRES 11 B 244 LYS LYS THR TYR GLY LYS PHE CYS GLY GLN HIS ASN GLN SEQRES 12 B 244 SER VAL ASN TYR PHE LYS ASP LEU TYR ALA LYS ASP LYS SEQRES 13 B 244 ARG PHE GLN ALA PHE VAL LYS LYS LYS MET SER SER SER SEQRES 14 B 244 VAL VAL ARG ARG LEU GLY ILE PRO GLU CYS ILE LEU LEU SEQRES 15 B 244 VAL THR GLN ARG ILE THR LYS TYR PRO VAL LEU PHE GLN SEQRES 16 B 244 ARG ILE LEU GLN CYS THR LYS ASP ASN GLU VAL GLU GLN SEQRES 17 B 244 GLU ASP LEU ALA GLN SER LEU SER LEU VAL LYS ASP VAL SEQRES 18 B 244 ILE GLY ALA VAL ASP SER LYS VAL ALA SER TYR GLU LYS SEQRES 19 B 244 LYS VAL ARG LEU ASN GLU ILE TYR THR LYS HELIX 1 1 ASN A 1969 ASP A 1985 1 17 HELIX 2 2 SER A 1986 GLN A 1991 1 6 HELIX 3 3 LYS A 1993 VAL A 2023 1 31 HELIX 4 4 VAL A 2023 LEU A 2032 1 10 HELIX 5 5 GLU A 2035 PHE A 2043 1 9 HELIX 6 6 CYS A 2045 GLU A 2066 1 22 HELIX 7 7 ILE A 2081 PHE A 2089 1 9 HELIX 8 8 SER A 2090 SER A 2135 1 46 HELIX 9 9 GLY A 2142 ILE A 2154 1 13 HELIX 10 10 LYS A 2156 THR A 2168 1 13 HELIX 11 11 ASN A 2171 ARG A 2204 1 34 HELIX 12 12 ASN B 1969 ASP B 1985 1 17 HELIX 13 13 SER B 1986 GLN B 1991 1 6 HELIX 14 14 LYS B 1993 VAL B 2023 1 31 HELIX 15 15 VAL B 2023 LEU B 2032 1 10 HELIX 16 16 GLU B 2035 PHE B 2043 1 9 HELIX 17 17 CYS B 2045 GLU B 2066 1 22 HELIX 18 18 ILE B 2081 PHE B 2089 1 9 HELIX 19 19 SER B 2090 SER B 2135 1 46 HELIX 20 20 GLY B 2142 ILE B 2154 1 13 HELIX 21 21 LYS B 2156 THR B 2168 1 13 HELIX 22 22 ASN B 2171 GLU B 2207 1 37 CRYST1 52.130 94.840 109.000 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019183 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010544 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009174 0.00000 MTRIX1 1 -0.340590 -0.037350 -0.939470 -8.62884 1 MTRIX2 1 0.033770 -0.999050 0.027480 -8.85407 1 MTRIX3 1 -0.939600 -0.022370 0.341530 -5.95361 1