HEADER TRANSCRIPTION 02-MAY-14 4D1L TITLE TETRAMERIZATION DOMAIN OF ZEBRAFISH P53 (CRYSTAL FORM I) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLULAR TUMOR ANTIGEN P53; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 FRAGMENT: TETRAMERIZATION DOMAIN, RESIDUES 302-346; COMPND 5 SYNONYM: P53; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSCRIPTION, P53 FAMILY, TUMOR SUPPRESSOR, TRANSCRIPTION FACTOR, KEYWDS 2 TETRAMER, PROTEIN EVOLUTION EXPDTA X-RAY DIFFRACTION AUTHOR A.C.JOERGER REVDAT 6 20-DEC-23 4D1L 1 REMARK LINK REVDAT 5 22-MAY-19 4D1L 1 REMARK REVDAT 4 08-MAY-19 4D1L 1 REMARK REVDAT 3 17-SEP-14 4D1L 1 JRNL REVDAT 2 03-SEP-14 4D1L 1 TITLE REVDAT 1 27-AUG-14 4D1L 0 JRNL AUTH A.C.JOERGER,R.WILCKEN,A.ANDREEVA JRNL TITL TRACING THE EVOLUTION OF THE P53 TETRAMERIZATION DOMAIN JRNL REF STRUCTURE V. 22 1301 2014 JRNL REFN ISSN 0969-2126 JRNL PMID 25185827 JRNL DOI 10.1016/J.STR.2014.07.010 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0071 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 22029 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1164 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.97 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1580 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.28 REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : 81 REMARK 3 BIN FREE R VALUE : 0.2810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1939 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 54 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.26000 REMARK 3 B22 (A**2) : 0.15000 REMARK 3 B33 (A**2) : -0.41000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.164 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.149 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.119 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.440 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1958 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1934 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2624 ; 1.342 ; 2.001 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4453 ; 0.764 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 228 ; 4.641 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;33.240 ;24.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 395 ;14.913 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;16.930 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 293 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2153 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 421 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 932 ; 2.043 ; 3.233 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 933 ; 2.042 ; 3.234 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1157 ; 2.804 ; 4.828 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1026 ; 3.016 ; 3.747 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 303 A 341 REMARK 3 ORIGIN FOR THE GROUP (A): -8.6907 -24.2937 15.6849 REMARK 3 T TENSOR REMARK 3 T11: 0.1265 T22: 0.0586 REMARK 3 T33: 0.1714 T12: 0.0294 REMARK 3 T13: -0.1096 T23: -0.0486 REMARK 3 L TENSOR REMARK 3 L11: 3.4829 L22: 4.3039 REMARK 3 L33: 6.6865 L12: -0.5679 REMARK 3 L13: -3.1758 L23: 1.3079 REMARK 3 S TENSOR REMARK 3 S11: -0.1647 S12: 0.1759 S13: 0.0921 REMARK 3 S21: 0.1623 S22: -0.0611 S23: 0.3252 REMARK 3 S31: -0.2703 S32: -0.1587 S33: 0.2258 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 303 B 339 REMARK 3 ORIGIN FOR THE GROUP (A): 1.8115 -23.0531 6.6083 REMARK 3 T TENSOR REMARK 3 T11: 0.1815 T22: 0.0625 REMARK 3 T33: 0.1620 T12: -0.0405 REMARK 3 T13: -0.1193 T23: 0.0447 REMARK 3 L TENSOR REMARK 3 L11: 7.6896 L22: 5.3724 REMARK 3 L33: 2.8017 L12: -3.1143 REMARK 3 L13: -2.0200 L23: 0.9020 REMARK 3 S TENSOR REMARK 3 S11: -0.1246 S12: 0.3844 S13: 0.6330 REMARK 3 S21: -0.2164 S22: -0.0916 S23: -0.2700 REMARK 3 S31: -0.1692 S32: -0.2144 S33: 0.2161 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 302 C 341 REMARK 3 ORIGIN FOR THE GROUP (A): -19.9785 -15.1352 -7.0661 REMARK 3 T TENSOR REMARK 3 T11: 0.1703 T22: 0.1218 REMARK 3 T33: 0.0922 T12: -0.0286 REMARK 3 T13: -0.0698 T23: -0.0252 REMARK 3 L TENSOR REMARK 3 L11: 6.2199 L22: 3.6003 REMARK 3 L33: 3.8078 L12: 3.0770 REMARK 3 L13: -2.1296 L23: -1.5068 REMARK 3 S TENSOR REMARK 3 S11: 0.1144 S12: -0.5991 S13: 0.1907 REMARK 3 S21: 0.2790 S22: -0.2030 S23: 0.0212 REMARK 3 S31: -0.2510 S32: 0.3764 S33: 0.0886 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 302 D 342 REMARK 3 ORIGIN FOR THE GROUP (A): -14.7052 -11.8063 -21.2892 REMARK 3 T TENSOR REMARK 3 T11: 0.0333 T22: 0.0169 REMARK 3 T33: 0.1324 T12: 0.0121 REMARK 3 T13: -0.0296 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 1.7776 L22: 5.7828 REMARK 3 L33: 6.6373 L12: 0.1302 REMARK 3 L13: -1.2306 L23: -3.7484 REMARK 3 S TENSOR REMARK 3 S11: 0.0171 S12: -0.1312 S13: -0.0221 REMARK 3 S21: -0.1977 S22: -0.1624 S23: -0.1847 REMARK 3 S31: 0.1600 S32: 0.1569 S33: 0.1453 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 303 E 343 REMARK 3 ORIGIN FOR THE GROUP (A): -28.8500 -14.4042 -9.8410 REMARK 3 T TENSOR REMARK 3 T11: 0.0756 T22: 0.0811 REMARK 3 T33: 0.1794 T12: -0.0003 REMARK 3 T13: 0.0099 T23: -0.0166 REMARK 3 L TENSOR REMARK 3 L11: 3.7232 L22: 2.7396 REMARK 3 L33: 8.3004 L12: 0.4674 REMARK 3 L13: 0.4772 L23: -1.2425 REMARK 3 S TENSOR REMARK 3 S11: 0.1106 S12: -0.2021 S13: 0.1132 REMARK 3 S21: 0.2972 S22: 0.0964 S23: 0.0732 REMARK 3 S31: -0.1805 S32: -0.5849 S33: -0.2070 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 302 F 340 REMARK 3 ORIGIN FOR THE GROUP (A): -24.1862 -8.2775 -23.1853 REMARK 3 T TENSOR REMARK 3 T11: 0.1380 T22: 0.0211 REMARK 3 T33: 0.1769 T12: 0.0278 REMARK 3 T13: -0.0585 T23: 0.0187 REMARK 3 L TENSOR REMARK 3 L11: 5.3751 L22: 3.4466 REMARK 3 L33: 8.2061 L12: 0.0433 REMARK 3 L13: -3.3606 L23: 0.4772 REMARK 3 S TENSOR REMARK 3 S11: 0.0935 S12: 0.1360 S13: 0.2403 REMARK 3 S21: -0.0933 S22: 0.0963 S23: 0.1198 REMARK 3 S31: -0.3488 S32: -0.3308 S33: -0.1898 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4D1L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1290060335. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23226 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 28.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.65000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1C26 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SITTING DROP VAPOR DIFFUSION AT 20 REMARK 280 DEGREE C; PROTEIN SOLUTION: 12 MG/ML IN 20 MM TRIS PH 7.5, 50 MM REMARK 280 NACL, 5 MM DTT; CRYSTALLIZATION BUFFER: 50 MM ZINC ACETATE AND REMARK 280 20% (W/V) POLYETHYLENE GLYCOL 3,350., VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.51450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 30.51450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 43.92650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.30550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 43.92650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.30550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 30.51450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 43.92650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 60.30550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 30.51450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 43.92650 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 60.30550 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 30.51450 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 299 REMARK 465 GLY A 300 REMARK 465 SER A 301 REMARK 465 GLU A 302 REMARK 465 LYS A 342 REMARK 465 PHE A 343 REMARK 465 MET A 344 REMARK 465 THR A 345 REMARK 465 LYS A 346 REMARK 465 GLY B 299 REMARK 465 GLY B 300 REMARK 465 SER B 301 REMARK 465 GLU B 302 REMARK 465 ARG B 340 REMARK 465 GLN B 341 REMARK 465 LYS B 342 REMARK 465 PHE B 343 REMARK 465 MET B 344 REMARK 465 THR B 345 REMARK 465 LYS B 346 REMARK 465 GLY C 299 REMARK 465 GLY C 300 REMARK 465 SER C 301 REMARK 465 LYS C 342 REMARK 465 PHE C 343 REMARK 465 MET C 344 REMARK 465 THR C 345 REMARK 465 LYS C 346 REMARK 465 GLY D 299 REMARK 465 GLY D 300 REMARK 465 SER D 301 REMARK 465 PHE D 343 REMARK 465 MET D 344 REMARK 465 THR D 345 REMARK 465 LYS D 346 REMARK 465 GLY E 299 REMARK 465 GLY E 300 REMARK 465 SER E 301 REMARK 465 GLU E 302 REMARK 465 MET E 344 REMARK 465 THR E 345 REMARK 465 LYS E 346 REMARK 465 GLY F 299 REMARK 465 GLY F 300 REMARK 465 SER F 301 REMARK 465 GLN F 341 REMARK 465 LYS F 342 REMARK 465 PHE F 343 REMARK 465 MET F 344 REMARK 465 THR F 345 REMARK 465 LYS F 346 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 341 CA C O CB CG CD OE1 REMARK 470 GLN A 341 NE2 REMARK 470 GLN C 341 CA C O CB CG CD OE1 REMARK 470 GLN C 341 NE2 REMARK 470 GLU D 302 N CB CG CD OE1 OE2 REMARK 470 ARG F 340 CA C O CB CG CD NE REMARK 470 ARG F 340 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG D 314 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG D 314 NE - CZ - NH2 ANGL. DEV. = -5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 336 -84.98 -59.38 REMARK 500 GLU B 337 -51.01 -21.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1342 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 313 OE1 REMARK 620 2 GLU A 313 OE2 49.7 REMARK 620 3 ASP B 329 OD1 150.3 100.6 REMARK 620 4 GLU C 337 OE2 88.0 135.5 120.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C1342 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 337 OE2 REMARK 620 2 ASP C 329 OD1 129.8 REMARK 620 3 GLU D 313 OE1 126.1 96.8 REMARK 620 4 GLU D 313 OE2 79.3 149.1 52.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1342 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 1342 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4D1M RELATED DB: PDB REMARK 900 P53 A CRYSTAL FORM II REMARK 999 REMARK 999 SEQUENCE REMARK 999 ADDITIONAL GGS SEQUENCE AT THE N TERMINUS AS A RESULT OF REMARK 999 CLONING STRATEGY DBREF 4D1L A 302 346 UNP G1K2L5 G1K2L5_DANRE 302 346 DBREF 4D1L B 302 346 UNP G1K2L5 G1K2L5_DANRE 302 346 DBREF 4D1L C 302 346 UNP G1K2L5 G1K2L5_DANRE 302 346 DBREF 4D1L D 302 346 UNP G1K2L5 G1K2L5_DANRE 302 346 DBREF 4D1L E 302 346 UNP G1K2L5 G1K2L5_DANRE 302 346 DBREF 4D1L F 302 346 UNP G1K2L5 G1K2L5_DANRE 302 346 SEQADV 4D1L GLY A 299 UNP G1K2L5 EXPRESSION TAG SEQADV 4D1L GLY A 300 UNP G1K2L5 EXPRESSION TAG SEQADV 4D1L SER A 301 UNP G1K2L5 EXPRESSION TAG SEQADV 4D1L GLY B 299 UNP G1K2L5 EXPRESSION TAG SEQADV 4D1L GLY B 300 UNP G1K2L5 EXPRESSION TAG SEQADV 4D1L SER B 301 UNP G1K2L5 EXPRESSION TAG SEQADV 4D1L GLY C 299 UNP G1K2L5 EXPRESSION TAG SEQADV 4D1L GLY C 300 UNP G1K2L5 EXPRESSION TAG SEQADV 4D1L SER C 301 UNP G1K2L5 EXPRESSION TAG SEQADV 4D1L GLY D 299 UNP G1K2L5 EXPRESSION TAG SEQADV 4D1L GLY D 300 UNP G1K2L5 EXPRESSION TAG SEQADV 4D1L SER D 301 UNP G1K2L5 EXPRESSION TAG SEQADV 4D1L GLY E 299 UNP G1K2L5 EXPRESSION TAG SEQADV 4D1L GLY E 300 UNP G1K2L5 EXPRESSION TAG SEQADV 4D1L SER E 301 UNP G1K2L5 EXPRESSION TAG SEQADV 4D1L GLY F 299 UNP G1K2L5 EXPRESSION TAG SEQADV 4D1L GLY F 300 UNP G1K2L5 EXPRESSION TAG SEQADV 4D1L SER F 301 UNP G1K2L5 EXPRESSION TAG SEQRES 1 A 48 GLY GLY SER GLU GLU ILE PHE THR LEU GLN VAL ARG GLY SEQRES 2 A 48 ARG GLU ARG TYR GLU ILE LEU LYS LYS LEU ASN ASP SER SEQRES 3 A 48 LEU GLU LEU SER ASP VAL VAL PRO ALA SER ASP ALA GLU SEQRES 4 A 48 LYS TYR ARG GLN LYS PHE MET THR LYS SEQRES 1 B 48 GLY GLY SER GLU GLU ILE PHE THR LEU GLN VAL ARG GLY SEQRES 2 B 48 ARG GLU ARG TYR GLU ILE LEU LYS LYS LEU ASN ASP SER SEQRES 3 B 48 LEU GLU LEU SER ASP VAL VAL PRO ALA SER ASP ALA GLU SEQRES 4 B 48 LYS TYR ARG GLN LYS PHE MET THR LYS SEQRES 1 C 48 GLY GLY SER GLU GLU ILE PHE THR LEU GLN VAL ARG GLY SEQRES 2 C 48 ARG GLU ARG TYR GLU ILE LEU LYS LYS LEU ASN ASP SER SEQRES 3 C 48 LEU GLU LEU SER ASP VAL VAL PRO ALA SER ASP ALA GLU SEQRES 4 C 48 LYS TYR ARG GLN LYS PHE MET THR LYS SEQRES 1 D 48 GLY GLY SER GLU GLU ILE PHE THR LEU GLN VAL ARG GLY SEQRES 2 D 48 ARG GLU ARG TYR GLU ILE LEU LYS LYS LEU ASN ASP SER SEQRES 3 D 48 LEU GLU LEU SER ASP VAL VAL PRO ALA SER ASP ALA GLU SEQRES 4 D 48 LYS TYR ARG GLN LYS PHE MET THR LYS SEQRES 1 E 48 GLY GLY SER GLU GLU ILE PHE THR LEU GLN VAL ARG GLY SEQRES 2 E 48 ARG GLU ARG TYR GLU ILE LEU LYS LYS LEU ASN ASP SER SEQRES 3 E 48 LEU GLU LEU SER ASP VAL VAL PRO ALA SER ASP ALA GLU SEQRES 4 E 48 LYS TYR ARG GLN LYS PHE MET THR LYS SEQRES 1 F 48 GLY GLY SER GLU GLU ILE PHE THR LEU GLN VAL ARG GLY SEQRES 2 F 48 ARG GLU ARG TYR GLU ILE LEU LYS LYS LEU ASN ASP SER SEQRES 3 F 48 LEU GLU LEU SER ASP VAL VAL PRO ALA SER ASP ALA GLU SEQRES 4 F 48 LYS TYR ARG GLN LYS PHE MET THR LYS HET ZN A1342 1 HET ZN C1342 1 HETNAM ZN ZINC ION FORMUL 7 ZN 2(ZN 2+) FORMUL 9 HOH *54(H2 O) HELIX 1 1 GLY A 311 VAL A 331 1 21 HELIX 2 2 PRO A 332 ARG A 340 1 9 HELIX 3 3 GLY B 311 VAL B 331 1 21 HELIX 4 4 PRO B 332 TYR B 339 1 8 HELIX 5 5 GLY C 311 VAL C 331 1 21 HELIX 6 6 PRO C 332 ARG C 340 1 9 HELIX 7 7 GLY D 311 ASP D 329 1 19 HELIX 8 8 PRO D 332 LYS D 342 1 11 HELIX 9 9 GLY E 311 VAL E 331 1 21 HELIX 10 10 PRO E 332 GLN E 341 1 10 HELIX 11 11 GLY F 311 VAL F 331 1 21 HELIX 12 12 PRO F 332 ALA F 336 5 5 SHEET 1 AA 2 ILE A 304 ARG A 310 0 SHEET 2 AA 2 ILE B 304 ARG B 310 -1 O PHE B 305 N VAL A 309 SHEET 1 CA 2 ILE C 304 ARG C 310 0 SHEET 2 CA 2 ILE D 304 ARG D 310 -1 O PHE D 305 N VAL C 309 SHEET 1 EA 2 ILE E 304 ARG E 310 0 SHEET 2 EA 2 ILE F 304 ARG F 310 -1 O PHE F 305 N VAL E 309 LINK OE1 GLU A 313 ZN ZN A1342 1555 1555 2.67 LINK OE2 GLU A 313 ZN ZN A1342 1555 1555 2.51 LINK ZN ZN A1342 OD1 ASP B 329 1555 1555 2.25 LINK ZN ZN A1342 OE2 GLU C 337 1555 8545 2.12 LINK OE2 GLU B 337 ZN ZN C1342 8445 1555 2.11 LINK OD1 ASP C 329 ZN ZN C1342 1555 1555 2.28 LINK ZN ZN C1342 OE1 GLU D 313 1555 1555 2.42 LINK ZN ZN C1342 OE2 GLU D 313 1555 1555 2.55 SITE 1 AC1 3 GLU A 313 ASP B 329 GLU C 337 SITE 1 AC2 3 GLU B 337 ASP C 329 GLU D 313 CRYST1 87.853 120.611 61.029 90.00 90.00 90.00 C 2 2 21 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011383 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008291 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016386 0.00000