HEADER GENE REGULATION 09-MAY-14 4D2H TITLE CRYSTAL STRUCTURE OF THE TETRAMERISATION DOMAIN OF HUMAN CTIP COMPND MOL_ID: 1; COMPND 2 MOLECULE: RBBP8; COMPND 3 CHAIN: A, B, C, D, E, F, G, H; COMPND 4 FRAGMENT: TETRAMERISATION DOMAIN, RESIDUES 18-52; COMPND 5 SYNONYM: CTBP-INTERACTING PROTEIN, CTIP, RETINOBLASTOMA-BINDING COMPND 6 PROTEIN 8, RBBP-8, RETINOBLASTOMA-INTERACTING PROTEIN AND MYOSIN- COMPND 7 LIKE, RIM, SPORULATION IN THE ABSENCE OF SPO11 PROTEIN 2 HOMOLOG, COMPND 8 SAE2; COMPND 9 EC: 3.1.-.-; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMAT11 KEYWDS GENE REGULATION, CTIP/RBBP8, DOUBLE-STRAND DNA BREAK REPAIR, DNA-END KEYWDS 2 RESECTION, GENE CONVERSION, HOMOLOGOUS RECOMBINATION EXPDTA X-RAY DIFFRACTION AUTHOR O.R.DAVIES,M.SUN,L.PELLEGRINI REVDAT 3 23-OCT-19 4D2H 1 ATOM REVDAT 2 18-FEB-15 4D2H 1 JRNL REVDAT 1 14-JAN-15 4D2H 0 JRNL AUTH O.R.DAVIES,J.V.FORMENT,M.SUN,R.BELOTSERKOVSKAYA,J.COATES, JRNL AUTH 2 Y.GALANTY,M.DEMIR,C.R.MORTON,N.J.RZECHORZEK,S.P.JACKSON, JRNL AUTH 3 L.PELLEGRINI JRNL TITL CTIP TETRAMER ASSEMBLY IS REQUIRED FOR DNA-END RESECTION AND JRNL TITL 2 REPAIR. JRNL REF NAT.STRUCT.MOL.BIOL. V. 22 150 2015 JRNL REFN ISSN 1545-9993 JRNL PMID 25558984 JRNL DOI 10.1038/NSMB.2937 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 20969 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 1079 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 11 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.99 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.40 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2778 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2170 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2642 REMARK 3 BIN R VALUE (WORKING SET) : 0.2164 REMARK 3 BIN FREE R VALUE : 0.2294 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 136 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2267 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 137 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.53 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.10780 REMARK 3 B22 (A**2) : -5.41390 REMARK 3 B33 (A**2) : 5.52170 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.42750 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.190 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.162 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.492 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.164 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4703 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 8552 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1107 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 78 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 623 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4703 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 279 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4747 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.88 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.35 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 14.20 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 3.4807 -1.7288 9.7623 REMARK 3 T TENSOR REMARK 3 T11: 0.2053 T22: 0.0800 REMARK 3 T33: -0.2236 T12: -0.0748 REMARK 3 T13: 0.0848 T23: -0.0325 REMARK 3 L TENSOR REMARK 3 L11: 1.7067 L22: 0.8468 REMARK 3 L33: 13.8012 L12: -0.3173 REMARK 3 L13: -0.4709 L23: -3.0063 REMARK 3 S TENSOR REMARK 3 S11: -0.0751 S12: 0.4117 S13: -0.1381 REMARK 3 S21: -0.2985 S22: 0.1932 S23: -0.2335 REMARK 3 S31: 0.3318 S32: -0.1157 S33: -0.1180 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 5.0793 2.0162 36.9078 REMARK 3 T TENSOR REMARK 3 T11: -0.0524 T22: -0.1508 REMARK 3 T33: -0.2177 T12: 0.0318 REMARK 3 T13: -0.1298 T23: -0.0527 REMARK 3 L TENSOR REMARK 3 L11: 2.3703 L22: 2.4515 REMARK 3 L33: 7.6394 L12: 0.3113 REMARK 3 L13: 2.0236 L23: -0.1582 REMARK 3 S TENSOR REMARK 3 S11: -0.0575 S12: -0.1392 S13: 0.0991 REMARK 3 S21: 0.5208 S22: -0.0601 S23: -0.4378 REMARK 3 S31: 0.0489 S32: 0.1926 S33: 0.1176 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): -4.0890 -5.4603 41.6799 REMARK 3 T TENSOR REMARK 3 T11: -0.0693 T22: 0.1211 REMARK 3 T33: -0.1857 T12: -0.0292 REMARK 3 T13: -0.0333 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.3807 L22: 1.5500 REMARK 3 L33: 4.8291 L12: 0.2005 REMARK 3 L13: -1.3083 L23: -1.5864 REMARK 3 S TENSOR REMARK 3 S11: -0.0220 S12: -0.0844 S13: -0.0734 REMARK 3 S21: -0.0895 S22: 0.0374 S23: 0.0517 REMARK 3 S31: 0.4498 S32: -0.2257 S33: -0.0154 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): -4.9876 4.8806 11.0018 REMARK 3 T TENSOR REMARK 3 T11: 0.0895 T22: 0.0776 REMARK 3 T33: -0.1379 T12: 0.0779 REMARK 3 T13: -0.0749 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.9232 L22: 0.6906 REMARK 3 L33: 9.5247 L12: -0.2196 REMARK 3 L13: 2.1618 L23: -1.0586 REMARK 3 S TENSOR REMARK 3 S11: 0.0400 S12: -0.0652 S13: -0.0229 REMARK 3 S21: -0.2471 S22: 0.0326 S23: 0.1167 REMARK 3 S31: -0.2366 S32: -0.4973 S33: -0.0727 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN E REMARK 3 ORIGIN FOR THE GROUP (A): 22.6118 -16.1381 35.4284 REMARK 3 T TENSOR REMARK 3 T11: 0.0046 T22: 0.0697 REMARK 3 T33: -0.2688 T12: 0.0335 REMARK 3 T13: -0.0634 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 1.6474 L22: 0.7689 REMARK 3 L33: 8.6547 L12: -0.6549 REMARK 3 L13: -0.9086 L23: 0.2042 REMARK 3 S TENSOR REMARK 3 S11: -0.0217 S12: -0.3968 S13: -0.0015 REMARK 3 S21: 0.0193 S22: 0.1747 S23: -0.0077 REMARK 3 S31: -0.4601 S32: 0.4258 S33: -0.1530 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN F REMARK 3 ORIGIN FOR THE GROUP (A): 23.4812 -20.8514 11.8281 REMARK 3 T TENSOR REMARK 3 T11: 0.1287 T22: 0.1191 REMARK 3 T33: -0.2575 T12: 0.1529 REMARK 3 T13: -0.0984 T23: -0.0597 REMARK 3 L TENSOR REMARK 3 L11: 0.9094 L22: 0.4446 REMARK 3 L33: 1.9523 L12: 0.2972 REMARK 3 L13: -0.5990 L23: 0.0719 REMARK 3 S TENSOR REMARK 3 S11: 0.0713 S12: 0.2117 S13: -0.0411 REMARK 3 S21: -0.0842 S22: 0.0028 S23: -0.1121 REMARK 3 S31: 0.1387 S32: 0.2058 S33: -0.0740 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN G REMARK 3 ORIGIN FOR THE GROUP (A): 14.3363 -13.4918 8.7485 REMARK 3 T TENSOR REMARK 3 T11: 0.2436 T22: 0.1190 REMARK 3 T33: -0.2233 T12: 0.0312 REMARK 3 T13: -0.1349 T23: -0.0483 REMARK 3 L TENSOR REMARK 3 L11: 0.5544 L22: 0.8686 REMARK 3 L33: 6.8575 L12: 0.3010 REMARK 3 L13: -0.3566 L23: -0.9310 REMARK 3 S TENSOR REMARK 3 S11: -0.1363 S12: 0.1916 S13: -0.0542 REMARK 3 S21: -0.4709 S22: 0.1406 S23: 0.1061 REMARK 3 S31: -0.3138 S32: -0.6478 S33: -0.0042 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN H REMARK 3 ORIGIN FOR THE GROUP (A): 13.6081 -23.5621 33.8882 REMARK 3 T TENSOR REMARK 3 T11: -0.0289 T22: 0.0574 REMARK 3 T33: -0.1807 T12: 0.0304 REMARK 3 T13: -0.1182 T23: -0.0535 REMARK 3 L TENSOR REMARK 3 L11: 0.4081 L22: 0.8057 REMARK 3 L33: 4.4101 L12: -0.1870 REMARK 3 L13: 0.2824 L23: -0.4940 REMARK 3 S TENSOR REMARK 3 S11: 0.0036 S12: -0.0944 S13: -0.1149 REMARK 3 S21: -0.2434 S22: -0.0986 S23: 0.1430 REMARK 3 S31: 0.0797 S32: -0.4500 S33: 0.0950 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IDEAL-DIST CONTACT TERM CONTACT SETUP. REMARK 3 ALL ATOMS HAVE CCP4 ATOM TYPE FROM LIBRARY. REMARK 4 REMARK 4 4D2H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1290060591. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03970 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS, AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20994 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 28.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.92000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM LITHIUM SULPHATE, 100 MM SODIUM REMARK 280 ACETATE PH 3.6, 32% (V/V) PEG 400 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 18.95500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -152.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -147.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 52 REMARK 465 GLY B 15 REMARK 465 SER B 16 REMARK 465 MET B 17 REMARK 465 ILE B 50 REMARK 465 LEU B 51 REMARK 465 ASP B 52 REMARK 465 GLY C 15 REMARK 465 SER C 16 REMARK 465 MET C 17 REMARK 465 SER C 18 REMARK 465 GLY D 15 REMARK 465 SER D 16 REMARK 465 MET D 17 REMARK 465 SER D 18 REMARK 465 ARG D 49 REMARK 465 ILE D 50 REMARK 465 LEU D 51 REMARK 465 ASP D 52 REMARK 465 GLY E 15 REMARK 465 SER E 16 REMARK 465 MET E 17 REMARK 465 SER E 18 REMARK 465 ARG E 49 REMARK 465 ILE E 50 REMARK 465 LEU E 51 REMARK 465 ASP E 52 REMARK 465 GLY F 15 REMARK 465 GLY G 15 REMARK 465 SER G 16 REMARK 465 MET G 17 REMARK 465 GLY H 15 REMARK 465 SER H 16 REMARK 465 MET H 17 REMARK 465 SER H 18 REMARK 465 ASP H 52 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER F 16 CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND1 HIS G 31 HD1 HIS H 31 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HZ2 LYS A 21 OXT ASP G 52 2656 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH E2003 DISTANCE = 5.81 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 G 1053 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1050 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1051 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1052 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 H 1052 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 G 1054 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 F 1053 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 F 1054 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 F 1055 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 1053 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 1049 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 1049 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 G 1055 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1052 DBREF 4D2H A 18 52 UNP Q99708 COM1_HUMAN 18 52 DBREF 4D2H B 18 52 UNP Q99708 COM1_HUMAN 18 52 DBREF 4D2H C 18 52 UNP Q99708 COM1_HUMAN 18 52 DBREF 4D2H D 18 52 UNP Q99708 COM1_HUMAN 18 52 DBREF 4D2H E 18 52 UNP Q99708 COM1_HUMAN 18 52 DBREF 4D2H F 18 52 UNP Q99708 COM1_HUMAN 18 52 DBREF 4D2H G 18 52 UNP Q99708 COM1_HUMAN 18 52 DBREF 4D2H H 18 52 UNP Q99708 COM1_HUMAN 18 52 SEQADV 4D2H GLY A 15 UNP Q99708 EXPRESSION TAG SEQADV 4D2H SER A 16 UNP Q99708 EXPRESSION TAG SEQADV 4D2H MET A 17 UNP Q99708 EXPRESSION TAG SEQADV 4D2H GLY B 15 UNP Q99708 EXPRESSION TAG SEQADV 4D2H SER B 16 UNP Q99708 EXPRESSION TAG SEQADV 4D2H MET B 17 UNP Q99708 EXPRESSION TAG SEQADV 4D2H GLY C 15 UNP Q99708 EXPRESSION TAG SEQADV 4D2H SER C 16 UNP Q99708 EXPRESSION TAG SEQADV 4D2H MET C 17 UNP Q99708 EXPRESSION TAG SEQADV 4D2H GLY D 15 UNP Q99708 EXPRESSION TAG SEQADV 4D2H SER D 16 UNP Q99708 EXPRESSION TAG SEQADV 4D2H MET D 17 UNP Q99708 EXPRESSION TAG SEQADV 4D2H GLY E 15 UNP Q99708 EXPRESSION TAG SEQADV 4D2H SER E 16 UNP Q99708 EXPRESSION TAG SEQADV 4D2H MET E 17 UNP Q99708 EXPRESSION TAG SEQADV 4D2H GLY F 15 UNP Q99708 EXPRESSION TAG SEQADV 4D2H SER F 16 UNP Q99708 EXPRESSION TAG SEQADV 4D2H MET F 17 UNP Q99708 EXPRESSION TAG SEQADV 4D2H GLY G 15 UNP Q99708 EXPRESSION TAG SEQADV 4D2H SER G 16 UNP Q99708 EXPRESSION TAG SEQADV 4D2H MET G 17 UNP Q99708 EXPRESSION TAG SEQADV 4D2H GLY H 15 UNP Q99708 EXPRESSION TAG SEQADV 4D2H SER H 16 UNP Q99708 EXPRESSION TAG SEQADV 4D2H MET H 17 UNP Q99708 EXPRESSION TAG SEQRES 1 A 38 GLY SER MET SER ASP PHE LYS ASP LEU TRP THR LYS LEU SEQRES 2 A 38 LYS GLU CYS HIS ASP ARG GLU VAL GLN GLY LEU GLN VAL SEQRES 3 A 38 LYS VAL THR LYS LEU LYS GLN GLU ARG ILE LEU ASP SEQRES 1 B 38 GLY SER MET SER ASP PHE LYS ASP LEU TRP THR LYS LEU SEQRES 2 B 38 LYS GLU CYS HIS ASP ARG GLU VAL GLN GLY LEU GLN VAL SEQRES 3 B 38 LYS VAL THR LYS LEU LYS GLN GLU ARG ILE LEU ASP SEQRES 1 C 38 GLY SER MET SER ASP PHE LYS ASP LEU TRP THR LYS LEU SEQRES 2 C 38 LYS GLU CYS HIS ASP ARG GLU VAL GLN GLY LEU GLN VAL SEQRES 3 C 38 LYS VAL THR LYS LEU LYS GLN GLU ARG ILE LEU ASP SEQRES 1 D 38 GLY SER MET SER ASP PHE LYS ASP LEU TRP THR LYS LEU SEQRES 2 D 38 LYS GLU CYS HIS ASP ARG GLU VAL GLN GLY LEU GLN VAL SEQRES 3 D 38 LYS VAL THR LYS LEU LYS GLN GLU ARG ILE LEU ASP SEQRES 1 E 38 GLY SER MET SER ASP PHE LYS ASP LEU TRP THR LYS LEU SEQRES 2 E 38 LYS GLU CYS HIS ASP ARG GLU VAL GLN GLY LEU GLN VAL SEQRES 3 E 38 LYS VAL THR LYS LEU LYS GLN GLU ARG ILE LEU ASP SEQRES 1 F 38 GLY SER MET SER ASP PHE LYS ASP LEU TRP THR LYS LEU SEQRES 2 F 38 LYS GLU CYS HIS ASP ARG GLU VAL GLN GLY LEU GLN VAL SEQRES 3 F 38 LYS VAL THR LYS LEU LYS GLN GLU ARG ILE LEU ASP SEQRES 1 G 38 GLY SER MET SER ASP PHE LYS ASP LEU TRP THR LYS LEU SEQRES 2 G 38 LYS GLU CYS HIS ASP ARG GLU VAL GLN GLY LEU GLN VAL SEQRES 3 G 38 LYS VAL THR LYS LEU LYS GLN GLU ARG ILE LEU ASP SEQRES 1 H 38 GLY SER MET SER ASP PHE LYS ASP LEU TRP THR LYS LEU SEQRES 2 H 38 LYS GLU CYS HIS ASP ARG GLU VAL GLN GLY LEU GLN VAL SEQRES 3 H 38 LYS VAL THR LYS LEU LYS GLN GLU ARG ILE LEU ASP HET SO4 A1052 5 HET SO4 B1050 5 HET SO4 B1051 5 HET SO4 B1052 5 HET SO4 C1053 5 HET SO4 D1049 5 HET SO4 E1049 5 HET SO4 F1053 5 HET SO4 F1054 5 HET SO4 F1055 5 HET SO4 G1053 5 HET SO4 G1054 5 HET SO4 G1055 5 HET SO4 H1052 5 HETNAM SO4 SULFATE ION FORMUL 9 SO4 14(O4 S 2-) FORMUL 23 HOH *137(H2 O) HELIX 1 1 SER A 16 LEU A 51 1 36 HELIX 2 2 SER B 18 GLN B 47 1 30 HELIX 3 3 ASP C 19 ASP C 52 1 34 HELIX 4 4 ASP D 19 GLU D 48 1 30 HELIX 5 5 ASP E 19 GLU E 48 1 30 HELIX 6 6 ASP F 19 ASP F 52 1 34 HELIX 7 7 SER G 18 GLN G 47 1 30 HELIX 8 8 ASP H 19 ILE H 50 1 32 SITE 1 AC1 5 VAL D 40 LYS D 44 LYS G 44 HOH G2018 SITE 2 AC1 5 HOH G2019 SITE 1 AC2 3 LYS B 21 HOH B2013 LYS C 28 SITE 1 AC3 2 LYS B 44 LYS E 44 SITE 1 AC4 2 LYS A 46 LYS B 41 SITE 1 AC5 1 LYS H 41 SITE 1 AC6 2 LYS F 28 LYS G 21 SITE 1 AC7 1 HOH F2013 SITE 1 AC8 8 SER A 18 HOH A2003 SER F 18 PHE F 20 SITE 2 AC8 8 HOH F2001 HOH F2015 HIS G 31 GLU H 34 SITE 1 AC9 2 LYS F 21 LYS G 28 SITE 1 BC1 4 GLU A 34 HIS B 31 PHE C 20 LYS C 21 SITE 1 BC2 5 HIS A 31 GLU B 34 ASP D 19 PHE D 20 SITE 2 BC2 5 LYS D 21 SITE 1 BC3 5 ASP E 19 PHE E 20 LYS E 21 GLU G 34 SITE 2 BC3 5 HIS H 31 SITE 1 BC4 7 GLU E 34 HIS F 31 HOH F2002 SER G 18 SITE 2 BC4 7 ASP G 19 PHE G 20 LYS G 21 SITE 1 BC5 6 SER B 18 PHE B 20 LYS B 21 HOH B2001 SITE 2 BC5 6 HIS C 31 GLU D 34 CRYST1 35.970 37.910 97.790 90.00 90.02 90.00 P 1 21 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027801 0.000000 0.000010 0.00000 SCALE2 0.000000 0.026378 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010226 0.00000