HEADER APOPTOSIS 12-MAY-14 4D2L TITLE VACCINIA VIRUS F1L BOUND TO BAK BH3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN F1L; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 18-186; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: BCL-2 HOMOLOGOUS ANTAGONIST/KILLER; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: RESIDUES 67-91; COMPND 11 SYNONYM: APOPTOSIS REGULATOR BAK, BCL-2-LIKE PROTEIN 7, BCL2-L-7, COMPND 12 F1L; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VACCINIA VIRUS (STRAIN ANKARA) (VACV); SOURCE 3 ORGANISM_TAXID: 126794; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: PLYZS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET DUET; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VARIANT: PLYZS; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 19 EXPRESSION_SYSTEM_PLASMID: PET DUET KEYWDS APOPTOSIS, BIM, BAK EXPDTA X-RAY DIFFRACTION AUTHOR M.KVANSAKUL,P.M.COLMAN REVDAT 4 20-DEC-23 4D2L 1 REMARK REVDAT 3 27-AUG-14 4D2L 1 TITLE REVDAT 2 13-AUG-14 4D2L 1 JRNL REVDAT 1 04-JUN-14 4D2L 0 JRNL AUTH S.CAMPBELL,J.THIBAULT,N.MEHTA,P.M.COLMAN,M.BARRY,M.KVANSAKUL JRNL TITL STRUCTURAL INSIGHT INTO BH3-DOMAIN BINDING OF VACCINIA VIRUS JRNL TITL 2 ANTI-APOPTOTIC F1L. JRNL REF J.VIROL. V. 88 8667 2014 JRNL REFN ISSN 0022-538X JRNL PMID 24850748 JRNL DOI 10.1128/JVI.01092-14 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 9605 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 454 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.7480 - 4.1860 0.98 3162 147 0.1835 0.2174 REMARK 3 2 4.1860 - 3.3232 1.00 3013 152 0.2168 0.2168 REMARK 3 3 3.3232 - 2.9032 1.00 2976 155 0.2622 0.3046 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.990 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 92.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 1327 REMARK 3 ANGLE : 1.260 1789 REMARK 3 CHIRALITY : 0.049 206 REMARK 3 PLANARITY : 0.005 227 REMARK 3 DIHEDRAL : 16.179 502 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.2750 -36.5650 0.7741 REMARK 3 T TENSOR REMARK 3 T11: 1.4681 T22: 1.1229 REMARK 3 T33: 1.1445 T12: -0.2126 REMARK 3 T13: 0.2539 T23: 0.1517 REMARK 3 L TENSOR REMARK 3 L11: 0.3999 L22: 1.8940 REMARK 3 L33: 0.0959 L12: -0.8938 REMARK 3 L13: 0.2089 L23: -0.4536 REMARK 3 S TENSOR REMARK 3 S11: -0.0566 S12: -1.4698 S13: -2.9686 REMARK 3 S21: 2.1489 S22: 0.0693 S23: -0.0137 REMARK 3 S31: -0.4159 S32: 1.3306 S33: -0.0057 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 58 THROUGH 80 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.8484 -31.8142 -16.0288 REMARK 3 T TENSOR REMARK 3 T11: 0.9999 T22: 0.9038 REMARK 3 T33: 0.9839 T12: 0.0424 REMARK 3 T13: 0.1934 T23: 0.1917 REMARK 3 L TENSOR REMARK 3 L11: 1.6413 L22: 3.4714 REMARK 3 L33: 3.2900 L12: 1.3908 REMARK 3 L13: -1.4582 L23: 1.4745 REMARK 3 S TENSOR REMARK 3 S11: 0.9838 S12: 0.3295 S13: 0.3857 REMARK 3 S21: 0.0075 S22: -0.4387 S23: 0.6438 REMARK 3 S31: 0.3022 S32: 0.1512 S33: -1.7549 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 81 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.6939 -46.5591 -12.6541 REMARK 3 T TENSOR REMARK 3 T11: 0.7406 T22: 0.9189 REMARK 3 T33: 0.7911 T12: 0.0119 REMARK 3 T13: 0.1408 T23: -0.0593 REMARK 3 L TENSOR REMARK 3 L11: 4.2992 L22: 1.8230 REMARK 3 L33: 2.4175 L12: 0.7474 REMARK 3 L13: -0.1527 L23: 0.1585 REMARK 3 S TENSOR REMARK 3 S11: 0.1442 S12: 0.2347 S13: 0.0974 REMARK 3 S21: 0.2143 S22: 0.0599 S23: 0.4021 REMARK 3 S31: -0.1583 S32: -0.2515 S33: -0.0034 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 186 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.7787 -46.6103 -16.1772 REMARK 3 T TENSOR REMARK 3 T11: 0.6249 T22: 0.8769 REMARK 3 T33: 0.7577 T12: 0.0005 REMARK 3 T13: 0.1005 T23: -0.0117 REMARK 3 L TENSOR REMARK 3 L11: 2.9006 L22: 1.6839 REMARK 3 L33: 2.9630 L12: -1.1532 REMARK 3 L13: -2.4079 L23: -2.1603 REMARK 3 S TENSOR REMARK 3 S11: 0.6330 S12: 0.2478 S13: 0.3764 REMARK 3 S21: 0.1846 S22: -0.1285 S23: 0.0713 REMARK 3 S31: -0.2869 S32: -0.4966 S33: 0.0081 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 54 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.5725 -52.8084 -6.0837 REMARK 3 T TENSOR REMARK 3 T11: 0.8499 T22: 1.1327 REMARK 3 T33: 1.0581 T12: -0.1197 REMARK 3 T13: 0.0061 T23: 0.2301 REMARK 3 L TENSOR REMARK 3 L11: 0.5313 L22: 1.2697 REMARK 3 L33: 0.4818 L12: -0.1484 REMARK 3 L13: -0.4636 L23: -0.0722 REMARK 3 S TENSOR REMARK 3 S11: 0.8205 S12: -2.1575 S13: -1.2647 REMARK 3 S21: -0.9754 S22: 0.5707 S23: 0.5104 REMARK 3 S31: 1.3818 S32: -1.6394 S33: 0.0188 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 71 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.9526 -42.4904 -12.0823 REMARK 3 T TENSOR REMARK 3 T11: 1.3566 T22: 1.8957 REMARK 3 T33: 1.5422 T12: 0.4623 REMARK 3 T13: 0.4067 T23: 0.3267 REMARK 3 L TENSOR REMARK 3 L11: 0.1250 L22: 0.2642 REMARK 3 L33: 0.4754 L12: -0.1856 REMARK 3 L13: 0.3001 L23: -0.3208 REMARK 3 S TENSOR REMARK 3 S11: -0.0745 S12: -0.5296 S13: 1.3556 REMARK 3 S21: -1.6877 S22: -0.1124 S23: 0.0641 REMARK 3 S31: -0.4591 S32: -0.5135 S33: 0.0243 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4D2L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1290060589. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9630 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 38.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 39.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 10.10 REMARK 200 R MERGE FOR SHELL (I) : 0.72000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2VTY REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.18 M AMMONIUM SULFATE AND 2.25 M REMARK 280 LICL., PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.54633 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 69.09267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 34.54633 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 69.09267 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 34.54633 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 69.09267 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 34.54633 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 69.09267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -82.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -34.54633 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 5 REMARK 465 GLY A 6 REMARK 465 SER A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 HIS A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 SER A 14 REMARK 465 GLN A 15 REMARK 465 ASP A 16 REMARK 465 PRO A 17 REMARK 465 VAL A 18 REMARK 465 GLN A 19 REMARK 465 ASP A 20 REMARK 465 ILE A 21 REMARK 465 GLU A 22 REMARK 465 ASP A 23 REMARK 465 GLU A 24 REMARK 465 ALA A 25 REMARK 465 SER A 26 REMARK 465 ASN A 27 REMARK 465 ASN A 28 REMARK 465 VAL A 29 REMARK 465 ASP A 30 REMARK 465 HIS A 31 REMARK 465 ASP A 32 REMARK 465 TYR A 33 REMARK 465 VAL A 34 REMARK 465 TYR A 35 REMARK 465 PRO A 36 REMARK 465 LEU A 37 REMARK 465 PRO A 38 REMARK 465 GLU A 39 REMARK 465 ASN A 40 REMARK 465 MET A 41 REMARK 465 VAL A 42 REMARK 465 TYR A 43 REMARK 465 ARG A 44 REMARK 465 PHE A 45 REMARK 465 ASP A 46 REMARK 465 LYS A 47 REMARK 465 SER A 48 REMARK 465 PRO B 51 REMARK 465 SER B 52 REMARK 465 SER B 53 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 63 CG CD CE NZ REMARK 470 GLN B 76 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET B 55 CG - SD - CE ANGL. DEV. = -10.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 50 -165.63 68.24 REMARK 500 SER A 56 -70.64 -67.74 REMARK 500 ILE A 185 -158.77 -126.87 REMARK 500 ASP B 74 49.04 -103.84 REMARK 500 SER B 75 -176.67 177.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR B 54 MET B 55 -141.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4D2M RELATED DB: PDB REMARK 900 VACCINIA VIRUS F1L BOUND TO BIM BH3 REMARK 999 REMARK 999 SEQUENCE REMARK 999 I125F MUTATION WAS INTRODUCED DBREF 4D2L A 18 186 UNP O57173 F1_VACCA 18 186 DBREF 4D2L B 51 75 UNP Q16611 BAK_HUMAN 67 91 SEQADV 4D2L MET A 5 UNP O57173 EXPRESSION TAG SEQADV 4D2L GLY A 6 UNP O57173 EXPRESSION TAG SEQADV 4D2L SER A 7 UNP O57173 EXPRESSION TAG SEQADV 4D2L HIS A 8 UNP O57173 EXPRESSION TAG SEQADV 4D2L HIS A 9 UNP O57173 EXPRESSION TAG SEQADV 4D2L HIS A 10 UNP O57173 EXPRESSION TAG SEQADV 4D2L HIS A 11 UNP O57173 EXPRESSION TAG SEQADV 4D2L HIS A 12 UNP O57173 EXPRESSION TAG SEQADV 4D2L HIS A 13 UNP O57173 EXPRESSION TAG SEQADV 4D2L SER A 14 UNP O57173 EXPRESSION TAG SEQADV 4D2L GLN A 15 UNP O57173 EXPRESSION TAG SEQADV 4D2L ASP A 16 UNP O57173 EXPRESSION TAG SEQADV 4D2L PRO A 17 UNP O57173 EXPRESSION TAG SEQADV 4D2L PHE A 125 UNP O57173 ILE 125 ENGINEERED MUTATION SEQADV 4D2L MET A 133 UNP O57173 LEU 133 CONFLICT SEQADV 4D2L LEU A 134 UNP O57173 MET 134 CONFLICT SEQADV 4D2L LYS B 63 UNP Q16611 ALA 79 CONFLICT SEQADV 4D2L GLN B 76 UNP Q16611 EXPRESSION TAG SEQRES 1 A 182 MET GLY SER HIS HIS HIS HIS HIS HIS SER GLN ASP PRO SEQRES 2 A 182 VAL GLN ASP ILE GLU ASP GLU ALA SER ASN ASN VAL ASP SEQRES 3 A 182 HIS ASP TYR VAL TYR PRO LEU PRO GLU ASN MET VAL TYR SEQRES 4 A 182 ARG PHE ASP LYS SER THR ASN ILE LEU ASP TYR LEU SER SEQRES 5 A 182 THR GLU ARG ASP HIS VAL MET MET ALA VAL ARG TYR TYR SEQRES 6 A 182 MET SER LYS GLN ARG LEU ASP ASP LEU TYR ARG GLN LEU SEQRES 7 A 182 PRO THR LYS THR ARG SER TYR ILE ASP ILE ILE ASN ILE SEQRES 8 A 182 TYR CYS ASP LYS VAL SER ASN ASP TYR ASN ARG ASP MET SEQRES 9 A 182 ASN ILE MET TYR ASP MET ALA SER THR LYS SER PHE THR SEQRES 10 A 182 VAL TYR ASP PHE ASN ASN GLU VAL ASN THR ILE MET LEU SEQRES 11 A 182 ASP ASN LYS GLY LEU GLY VAL ARG LEU ALA THR ILE SER SEQRES 12 A 182 PHE ILE THR GLU LEU GLY ARG ARG CYS MET ASN PRO VAL SEQRES 13 A 182 LYS THR ILE LYS MET PHE THR LEU LEU SER HIS THR ILE SEQRES 14 A 182 CYS ASP ASP CYS PHE VAL ASP TYR ILE THR ASP ILE SER SEQRES 1 B 26 PRO SER SER THR MET GLY GLN VAL GLY ARG GLN LEU LYS SEQRES 2 B 26 ILE ILE GLY ASP ASP ILE ASN ARG ARG TYR ASP SER GLN HELIX 1 1 THR A 57 GLN A 81 1 25 HELIX 2 2 PRO A 83 TYR A 104 1 22 HELIX 3 3 TYR A 104 THR A 117 1 14 HELIX 4 4 THR A 121 ASN A 136 1 16 HELIX 5 5 GLY A 138 CYS A 156 1 19 HELIX 6 6 ASN A 158 CYS A 174 1 17 HELIX 7 7 ASP A 175 ASP A 184 1 10 HELIX 8 8 MET B 55 ARG B 72 1 18 CRYST1 116.691 116.691 103.639 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008570 0.004948 0.000000 0.00000 SCALE2 0.000000 0.009895 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009649 0.00000