HEADER HYDROLASE 12-MAY-14 4D2O TITLE CRYSTAL STRUCTURE OF THE CLASS A EXTENDED-SPECTRUM BETA-LACTAMASE PER- TITLE 2 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PER-2 BETA-LACTAMASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 25-308; COMPND 5 SYNONYM: CLASS A BETA-LACTAMASE; COMPND 6 EC: 3.5.2.6; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CITROBACTER FREUNDII; SOURCE 3 ORGANISM_TAXID: 546; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR: PET28 KEYWDS HYDROLASE, OXYIMINO-CEPHALOSPORINASE, ESBL, CEFOTAXIMASE EXPDTA X-RAY DIFFRACTION AUTHOR P.POWER,R.HERMAN,M.RUGGIERO,F.KERFF,M.GALLENI,G.GUTKIND,P.CHARLIER, AUTHOR 2 E.SAUVAGE REVDAT 4 20-DEC-23 4D2O 1 REMARK REVDAT 3 01-OCT-14 4D2O 1 JRNL REVDAT 2 13-AUG-14 4D2O 1 JRNL REVDAT 1 21-MAY-14 4D2O 0 SPRSDE 21-MAY-14 4D2O 3ZNW JRNL AUTH M.RUGGIERO,E.SAUVAGE,R.HERMAN,M.GALLENI,G.GUTKIND, JRNL AUTH 2 P.CHARLIER,P.POWER JRNL TITL CRYSTAL STRUCTURE OF THE EXTENDED-SPECTRUM BETA-LACTAMASE JRNL TITL 2 PER- 2 AND INSIGHTS INTO THE ROLE OF SPECIFIC RESIDUES IN JRNL TITL 3 THE INTERACTION WITH BETA-LACTAMS AND BETA-LACTAMASE JRNL TITL 4 INHIBITORS. JRNL REF ANTIMICROB.AGENTS CHEMOTHER. V. 58 5994 2014 JRNL REFN ISSN 0066-4804 JRNL PMID 25070104 JRNL DOI 10.1128/AAC.00089-14 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 22125 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1199 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1574 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2670 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4255 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 152 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : -0.07000 REMARK 3 B33 (A**2) : 0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.431 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.240 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.172 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.878 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4314 ; 0.013 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5830 ; 1.619 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 534 ; 6.340 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 181 ;36.435 ;26.243 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 759 ;15.185 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;23.793 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 692 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3126 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 24 A 89 REMARK 3 ORIGIN FOR THE GROUP (A): 13.0120 -17.4120 41.1020 REMARK 3 T TENSOR REMARK 3 T11: 0.1178 T22: 0.1454 REMARK 3 T33: 0.0441 T12: 0.0014 REMARK 3 T13: 0.0099 T23: -0.0177 REMARK 3 L TENSOR REMARK 3 L11: 0.9787 L22: 0.6975 REMARK 3 L33: 0.9712 L12: -0.2750 REMARK 3 L13: 0.4646 L23: -0.4601 REMARK 3 S TENSOR REMARK 3 S11: -0.0115 S12: -0.0365 S13: 0.0340 REMARK 3 S21: 0.1161 S22: -0.0135 S23: -0.1161 REMARK 3 S31: -0.0174 S32: 0.0350 S33: 0.0250 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 90 A 156 REMARK 3 ORIGIN FOR THE GROUP (A): 7.1530 -4.8420 21.2600 REMARK 3 T TENSOR REMARK 3 T11: 0.0899 T22: 0.1382 REMARK 3 T33: 0.0838 T12: 0.0060 REMARK 3 T13: 0.0347 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 0.6162 L22: 0.8893 REMARK 3 L33: 2.2590 L12: -0.2821 REMARK 3 L13: 0.5294 L23: 0.3882 REMARK 3 S TENSOR REMARK 3 S11: 0.0102 S12: 0.0517 S13: 0.0508 REMARK 3 S21: -0.0633 S22: -0.0650 S23: -0.0663 REMARK 3 S31: -0.1075 S32: 0.0126 S33: 0.0548 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 157 A 174 REMARK 3 ORIGIN FOR THE GROUP (A): 20.0790 -4.4860 31.4330 REMARK 3 T TENSOR REMARK 3 T11: 0.1152 T22: 0.1344 REMARK 3 T33: 0.1200 T12: -0.0001 REMARK 3 T13: -0.0619 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 2.5569 L22: 2.5433 REMARK 3 L33: 4.2747 L12: 0.9182 REMARK 3 L13: -2.0107 L23: -3.0010 REMARK 3 S TENSOR REMARK 3 S11: 0.0029 S12: 0.0998 S13: -0.0141 REMARK 3 S21: 0.0904 S22: -0.0824 S23: -0.1687 REMARK 3 S31: -0.0523 S32: 0.0882 S33: 0.0795 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 175 A 239 REMARK 3 ORIGIN FOR THE GROUP (A): 7.4530 -17.0070 33.7010 REMARK 3 T TENSOR REMARK 3 T11: 0.0820 T22: 0.1628 REMARK 3 T33: 0.0774 T12: -0.0035 REMARK 3 T13: 0.0358 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 0.2200 L22: 0.8792 REMARK 3 L33: 0.5359 L12: -0.2586 REMARK 3 L13: 0.1657 L23: -0.2053 REMARK 3 S TENSOR REMARK 3 S11: -0.0303 S12: 0.0017 S13: 0.0024 REMARK 3 S21: 0.0191 S22: 0.0131 S23: 0.0498 REMARK 3 S31: -0.0220 S32: -0.0403 S33: 0.0172 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 240 A 272 REMARK 3 ORIGIN FOR THE GROUP (A): 15.7220 -22.2400 35.1870 REMARK 3 T TENSOR REMARK 3 T11: 0.0834 T22: 0.1373 REMARK 3 T33: 0.0724 T12: 0.0067 REMARK 3 T13: 0.0172 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 5.8438 L22: 1.4738 REMARK 3 L33: 1.3464 L12: 1.1321 REMARK 3 L13: -1.6061 L23: -0.7219 REMARK 3 S TENSOR REMARK 3 S11: 0.0104 S12: 0.1313 S13: 0.1015 REMARK 3 S21: -0.0983 S22: 0.0108 S23: -0.0413 REMARK 3 S31: 0.0794 S32: 0.0326 S33: -0.0213 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 273 A 297 REMARK 3 ORIGIN FOR THE GROUP (A): 11.4470 -32.3600 40.0930 REMARK 3 T TENSOR REMARK 3 T11: 0.1412 T22: 0.1352 REMARK 3 T33: 0.0765 T12: 0.0159 REMARK 3 T13: -0.0202 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 6.3824 L22: 1.8550 REMARK 3 L33: 4.0415 L12: 2.5426 REMARK 3 L13: -3.7590 L23: -2.1626 REMARK 3 S TENSOR REMARK 3 S11: -0.0821 S12: -0.0501 S13: -0.2498 REMARK 3 S21: -0.1218 S22: 0.0182 S23: -0.0949 REMARK 3 S31: 0.2861 S32: -0.0726 S33: 0.0639 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 26 B 87 REMARK 3 ORIGIN FOR THE GROUP (A): -9.9560 -22.4890 -0.8090 REMARK 3 T TENSOR REMARK 3 T11: 0.0980 T22: 0.1421 REMARK 3 T33: 0.0762 T12: 0.0010 REMARK 3 T13: -0.0039 T23: -0.0189 REMARK 3 L TENSOR REMARK 3 L11: 0.3437 L22: 0.4495 REMARK 3 L33: 1.4911 L12: 0.1173 REMARK 3 L13: 0.1644 L23: -0.1200 REMARK 3 S TENSOR REMARK 3 S11: 0.0134 S12: 0.0010 S13: 0.0030 REMARK 3 S21: -0.1360 S22: -0.0213 S23: 0.0330 REMARK 3 S31: -0.0313 S32: -0.0691 S33: 0.0079 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 88 B 137 REMARK 3 ORIGIN FOR THE GROUP (A): 9.9730 -31.7840 16.2400 REMARK 3 T TENSOR REMARK 3 T11: 0.1003 T22: 0.1447 REMARK 3 T33: 0.0487 T12: -0.0065 REMARK 3 T13: 0.0241 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 2.3824 L22: 2.4514 REMARK 3 L33: 1.9356 L12: 0.3666 REMARK 3 L13: 0.4286 L23: -0.6712 REMARK 3 S TENSOR REMARK 3 S11: 0.1000 S12: 0.0521 S13: -0.1445 REMARK 3 S21: -0.0805 S22: -0.0707 S23: -0.1601 REMARK 3 S31: -0.0487 S32: 0.1413 S33: -0.0293 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 138 B 195 REMARK 3 ORIGIN FOR THE GROUP (A): -2.8320 -33.1740 0.8100 REMARK 3 T TENSOR REMARK 3 T11: 0.1127 T22: 0.1101 REMARK 3 T33: 0.0404 T12: 0.0041 REMARK 3 T13: -0.0188 T23: -0.0296 REMARK 3 L TENSOR REMARK 3 L11: 2.4018 L22: 1.6687 REMARK 3 L33: 1.9117 L12: -0.1527 REMARK 3 L13: 0.1546 L23: -0.1846 REMARK 3 S TENSOR REMARK 3 S11: 0.0561 S12: 0.0799 S13: -0.0609 REMARK 3 S21: -0.1104 S22: 0.0134 S23: -0.0586 REMARK 3 S31: 0.1735 S32: -0.0201 S33: -0.0696 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 196 B 251 REMARK 3 ORIGIN FOR THE GROUP (A): -4.2770 -19.9550 9.1840 REMARK 3 T TENSOR REMARK 3 T11: 0.0823 T22: 0.1538 REMARK 3 T33: 0.0711 T12: 0.0105 REMARK 3 T13: 0.0164 T23: -0.0264 REMARK 3 L TENSOR REMARK 3 L11: 0.9979 L22: 1.3190 REMARK 3 L33: 0.9742 L12: 0.1509 REMARK 3 L13: -0.0112 L23: -0.7460 REMARK 3 S TENSOR REMARK 3 S11: -0.0221 S12: -0.0107 S13: -0.0696 REMARK 3 S21: 0.0672 S22: -0.0151 S23: -0.0087 REMARK 3 S31: -0.0745 S32: -0.0761 S33: 0.0373 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 252 B 272 REMARK 3 ORIGIN FOR THE GROUP (A): -7.8920 -16.0090 1.5420 REMARK 3 T TENSOR REMARK 3 T11: 0.0907 T22: 0.1118 REMARK 3 T33: 0.0985 T12: 0.0243 REMARK 3 T13: 0.0067 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 1.9605 L22: 0.6911 REMARK 3 L33: 3.0227 L12: 0.2414 REMARK 3 L13: -1.5714 L23: 0.2052 REMARK 3 S TENSOR REMARK 3 S11: -0.0693 S12: -0.0798 S13: 0.0149 REMARK 3 S21: -0.0674 S22: 0.0216 S23: 0.0877 REMARK 3 S31: 0.0817 S32: 0.0753 S33: 0.0477 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 273 B 297 REMARK 3 ORIGIN FOR THE GROUP (A): -13.4920 -9.4290 1.8530 REMARK 3 T TENSOR REMARK 3 T11: 0.1719 T22: 0.1412 REMARK 3 T33: 0.0464 T12: 0.0415 REMARK 3 T13: -0.0241 T23: 0.0133 REMARK 3 L TENSOR REMARK 3 L11: 13.0252 L22: 1.0298 REMARK 3 L33: 1.9605 L12: -1.2389 REMARK 3 L13: -4.1377 L23: 0.1052 REMARK 3 S TENSOR REMARK 3 S11: -0.0677 S12: 0.2522 S13: 0.3375 REMARK 3 S21: 0.0429 S22: 0.0891 S23: 0.0332 REMARK 3 S31: -0.0992 S32: -0.2245 S33: -0.0214 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4D2O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1290060547. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98011 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23354 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 41.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.65000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1E25 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, 1.5 M SODIUM CITRATE REMARK 280 BUFFER (PH 7.5). REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.94000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 23 REMARK 465 LEU A 103 REMARK 465 GLN A 103A REMARK 465 ASN A 103B REMARK 465 SER A 298 REMARK 465 PRO A 299 REMARK 465 ASP A 300 REMARK 465 SER B 23 REMARK 465 ALA B 24 REMARK 465 GLN B 25 REMARK 465 SER B 298 REMARK 465 PRO B 299 REMARK 465 ASP B 300 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN A 174 O HOH A 2066 1655 1.80 REMARK 500 O HOH A 2054 O HOH B 2002 1656 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 49 CE2 TRP A 49 CD2 0.080 REMARK 500 HIS A 75 CG HIS A 75 CD2 0.058 REMARK 500 PRO A 253 C ASP A 255 N 0.170 REMARK 500 LEU B 103 C GLN B 103A N 0.153 REMARK 500 GLN B 103A C ASN B 103B N 0.190 REMARK 500 GLN B 112A C GLY B 112B N 0.195 REMARK 500 HIS B 129 CG HIS B 129 CD2 0.056 REMARK 500 HIS B 233 CG HIS B 233 CD2 0.067 REMARK 500 PRO B 253 C ASP B 255 N 0.197 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 25 71.38 55.88 REMARK 500 GLN A 69 -135.02 44.17 REMARK 500 SER A 106 95.22 -160.60 REMARK 500 ARG A 220 -79.56 -91.77 REMARK 500 ALA A 240B 30.14 73.08 REMARK 500 ASN B 61 77.11 61.54 REMARK 500 GLN B 69 -132.52 42.88 REMARK 500 ASN B 103B -45.53 -137.20 REMARK 500 GLU B 114 139.15 -177.91 REMARK 500 GLU B 159 61.02 -104.87 REMARK 500 ARG B 220 -81.47 -94.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PRO A 253 -12.97 REMARK 500 GLN B 112A 10.42 REMARK 500 REMARK 500 REMARK: NULL DBREF 4D2O A 23 300 UNP A2RP81 A2RP81_CITFR 25 308 DBREF 4D2O B 23 300 UNP A2RP81 A2RP81_CITFR 25 308 SEQRES 1 A 284 SER ALA GLN SER PRO LEU LEU LYS GLU GLN ILE GLU THR SEQRES 2 A 284 ILE VAL THR GLY LYS LYS ALA THR VAL GLY VAL ALA VAL SEQRES 3 A 284 TRP GLY PRO ASP ASP LEU GLU PRO LEU LEU LEU ASN PRO SEQRES 4 A 284 PHE GLU LYS PHE PRO MET GLN SER VAL PHE LYS LEU HIS SEQRES 5 A 284 LEU ALA MET LEU VAL LEU HIS GLN VAL ASP GLN GLY LYS SEQRES 6 A 284 LEU ASP LEU ASN GLN SER VAL THR VAL ASN ARG ALA ALA SEQRES 7 A 284 VAL LEU GLN ASN THR TRP SER PRO MET MET LYS ASP HIS SEQRES 8 A 284 GLN GLY ASP GLU PHE THR VAL ALA VAL GLN GLN LEU LEU SEQRES 9 A 284 GLN TYR SER VAL SER HIS SER ASP ASN VAL ALA CYS ASP SEQRES 10 A 284 LEU LEU PHE GLU LEU VAL GLY GLY PRO GLN ALA LEU HIS SEQRES 11 A 284 ALA TYR ILE GLN SER LEU GLY VAL LYS GLU ALA ALA VAL SEQRES 12 A 284 VAL ALA ASN GLU ALA GLN MET HIS ALA ASP ASP GLN VAL SEQRES 13 A 284 GLN TYR GLN ASN TRP THR SER MET LYS ALA ALA ALA GLN SEQRES 14 A 284 VAL LEU GLN LYS PHE GLU GLN LYS LYS GLN LEU SER GLU SEQRES 15 A 284 THR SER GLN ALA LEU LEU TRP LYS TRP MET VAL GLU THR SEQRES 16 A 284 THR THR GLY PRO GLN ARG LEU LYS GLY LEU LEU PRO ALA SEQRES 17 A 284 GLY THR ILE VAL ALA HIS LYS THR GLY THR SER GLY VAL SEQRES 18 A 284 ARG ALA GLY LYS THR ALA ALA THR ASN ASP ALA GLY VAL SEQRES 19 A 284 ILE MET LEU PRO ASP GLY ARG PRO LEU LEU VAL ALA VAL SEQRES 20 A 284 PHE VAL LYS ASP SER ALA GLU SER GLU ARG THR ASN GLU SEQRES 21 A 284 ALA ILE ILE ALA GLN VAL ALA GLN ALA ALA TYR GLN PHE SEQRES 22 A 284 GLU LEU LYS LYS LEU SER ALA VAL SER PRO ASP SEQRES 1 B 284 SER ALA GLN SER PRO LEU LEU LYS GLU GLN ILE GLU THR SEQRES 2 B 284 ILE VAL THR GLY LYS LYS ALA THR VAL GLY VAL ALA VAL SEQRES 3 B 284 TRP GLY PRO ASP ASP LEU GLU PRO LEU LEU LEU ASN PRO SEQRES 4 B 284 PHE GLU LYS PHE PRO MET GLN SER VAL PHE LYS LEU HIS SEQRES 5 B 284 LEU ALA MET LEU VAL LEU HIS GLN VAL ASP GLN GLY LYS SEQRES 6 B 284 LEU ASP LEU ASN GLN SER VAL THR VAL ASN ARG ALA ALA SEQRES 7 B 284 VAL LEU GLN ASN THR TRP SER PRO MET MET LYS ASP HIS SEQRES 8 B 284 GLN GLY ASP GLU PHE THR VAL ALA VAL GLN GLN LEU LEU SEQRES 9 B 284 GLN TYR SER VAL SER HIS SER ASP ASN VAL ALA CYS ASP SEQRES 10 B 284 LEU LEU PHE GLU LEU VAL GLY GLY PRO GLN ALA LEU HIS SEQRES 11 B 284 ALA TYR ILE GLN SER LEU GLY VAL LYS GLU ALA ALA VAL SEQRES 12 B 284 VAL ALA ASN GLU ALA GLN MET HIS ALA ASP ASP GLN VAL SEQRES 13 B 284 GLN TYR GLN ASN TRP THR SER MET LYS ALA ALA ALA GLN SEQRES 14 B 284 VAL LEU GLN LYS PHE GLU GLN LYS LYS GLN LEU SER GLU SEQRES 15 B 284 THR SER GLN ALA LEU LEU TRP LYS TRP MET VAL GLU THR SEQRES 16 B 284 THR THR GLY PRO GLN ARG LEU LYS GLY LEU LEU PRO ALA SEQRES 17 B 284 GLY THR ILE VAL ALA HIS LYS THR GLY THR SER GLY VAL SEQRES 18 B 284 ARG ALA GLY LYS THR ALA ALA THR ASN ASP ALA GLY VAL SEQRES 19 B 284 ILE MET LEU PRO ASP GLY ARG PRO LEU LEU VAL ALA VAL SEQRES 20 B 284 PHE VAL LYS ASP SER ALA GLU SER GLU ARG THR ASN GLU SEQRES 21 B 284 ALA ILE ILE ALA GLN VAL ALA GLN ALA ALA TYR GLN PHE SEQRES 22 B 284 GLU LEU LYS LYS LEU SER ALA VAL SER PRO ASP FORMUL 3 HOH *152(H2 O) HELIX 1 1 GLN A 25 THR A 38 1 14 HELIX 2 2 VAL A 71 GLN A 86 1 16 HELIX 3 3 SER A 106 HIS A 112 1 7 HELIX 4 4 VAL A 119 SER A 130 1 12 HELIX 5 5 ASP A 131 GLY A 143 1 13 HELIX 6 6 GLY A 143 LEU A 155 1 13 HELIX 7 7 ASN A 165 ASP A 172 1 8 HELIX 8 8 GLN A 174 GLN A 178 5 5 HELIX 9 9 SER A 182 LYS A 196 1 15 HELIX 10 10 SER A 200 GLU A 213 1 14 HELIX 11 11 SER A 271 ALA A 296 1 26 HELIX 12 12 SER B 26 THR B 38 1 13 HELIX 13 13 VAL B 71 GLN B 86 1 16 HELIX 14 14 ALA B 100 VAL B 102 5 3 HELIX 15 15 SER B 106 HIS B 112 1 7 HELIX 16 16 VAL B 119 SER B 130 1 12 HELIX 17 17 ASP B 131 GLY B 143 1 13 HELIX 18 18 GLY B 144 LEU B 155 1 12 HELIX 19 19 ASN B 165 ASP B 172 1 8 HELIX 20 20 GLN B 174 GLN B 178 5 5 HELIX 21 21 SER B 182 GLN B 195 1 14 HELIX 22 22 SER B 200 THR B 214 1 15 HELIX 23 23 LEU B 221 LEU B 225 5 5 HELIX 24 24 SER B 271 LEU B 294 1 24 SHEET 1 AA 5 LEU A 57 LEU A 60 0 SHEET 2 AA 5 THR A 43 TRP A 49 -1 O VAL A 46 N LEU A 60 SHEET 3 AA 5 PRO A 258 SER A 268 -1 O LEU A 260 N TRP A 49 SHEET 4 AA 5 LYS A 240D MET A 251 -1 O THR A 241 N SER A 268 SHEET 5 AA 5 VAL A 240 ARG A 240A 1 O ARG A 240A N LYS A 240D SHEET 1 AB 5 LEU A 57 LEU A 60 0 SHEET 2 AB 5 THR A 43 TRP A 49 -1 O VAL A 46 N LEU A 60 SHEET 3 AB 5 PRO A 258 SER A 268 -1 O LEU A 260 N TRP A 49 SHEET 4 AB 5 LYS A 240D MET A 251 -1 O THR A 241 N SER A 268 SHEET 5 AB 5 VAL A 231 THR A 237 -1 O ALA A 232 N VAL A 249 SHEET 1 AC 2 VAL A 240 ARG A 240A 0 SHEET 2 AC 2 LYS A 240D MET A 251 1 O LYS A 240D N ARG A 240A SHEET 1 AD 3 PHE A 66 PRO A 67 0 SHEET 2 AD 3 TRP A 180 THR A 181 -1 O THR A 181 N PHE A 66 SHEET 3 AD 3 ALA A 160 ALA A 161 -1 O ALA A 161 N TRP A 180 SHEET 1 AE 2 SER A 94 ASN A 98 0 SHEET 2 AE 2 GLU A 114 ALA A 118 -1 O PHE A 115 N VAL A 97 SHEET 1 BA 5 LEU B 57 LEU B 60 0 SHEET 2 BA 5 THR B 43 TRP B 49 -1 O VAL B 46 N LEU B 60 SHEET 3 BA 5 PRO B 258 SER B 268 -1 O LEU B 260 N TRP B 49 SHEET 4 BA 5 THR B 241 MET B 251 -1 O THR B 241 N SER B 268 SHEET 5 BA 5 VAL B 231 THR B 237 -1 O ALA B 232 N VAL B 249 SHEET 1 BB 2 PHE B 66 PRO B 67 0 SHEET 2 BB 2 TRP B 180 THR B 181 -1 O THR B 181 N PHE B 66 SHEET 1 BC 2 SER B 94 ASN B 98 0 SHEET 2 BC 2 GLU B 114 ALA B 118 -1 O PHE B 115 N VAL B 97 CRYST1 41.480 83.880 68.944 90.00 103.92 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024108 0.000000 0.005975 0.00000 SCALE2 0.000000 0.011922 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014943 0.00000