HEADER OXIDOREDUCTASE 21-OCT-14 4D3F TITLE BCSIRED FROM BACILLUS CEREUS IN COMPLEX WITH NADPH COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMINE REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.5.1.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CEREUS; SOURCE 3 ORGANISM_TAXID: 1396; SOURCE 4 STRAIN: BAG3X2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETYSBLIC-3C KEYWDS IMINE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.MAN,S.HART,J.P.TURKENBURG,G.GROGAN REVDAT 5 20-DEC-23 4D3F 1 REMARK REVDAT 4 18-SEP-19 4D3F 1 SOURCE DBREF REVDAT 3 13-MAY-15 4D3F 1 JRNL REVDAT 2 08-APR-15 4D3F 1 JRNL REVDAT 1 01-APR-15 4D3F 0 JRNL AUTH H.MAN,E.WELLS,S.HUSSAIN,F.LEIPOLD,S.HART,J.P.TURKENBURG, JRNL AUTH 2 N.J.TURNER,G.GROGAN JRNL TITL STRUCTURE, ACTIVITY AND STEREOSELECTIVITY OF NADPH-DEPENDENT JRNL TITL 2 OXIDOREDUCTASES CATALYSING THE S-SELECTIVE REDUCTION OF THE JRNL TITL 3 IMINE SUBSTRATE 2-METHYLPYRROLINE. JRNL REF CHEMBIOCHEM V. 16 1052 2015 JRNL REFN ISSN 1439-4227 JRNL PMID 25809902 JRNL DOI 10.1002/CBIC.201402625 REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 107.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 65636 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3365 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.81 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.86 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4845 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 233 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4360 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 355 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.76000 REMARK 3 B22 (A**2) : 2.35000 REMARK 3 B33 (A**2) : -1.59000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.102 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.098 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.073 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.432 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4518 ; 0.021 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4206 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6160 ; 1.998 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9649 ; 1.427 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 575 ; 5.687 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 186 ;33.722 ;23.656 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 707 ;15.051 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;25.108 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 709 ; 0.158 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5122 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1029 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2294 ; 2.603 ; 2.804 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2293 ; 2.595 ; 2.802 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2865 ; 3.222 ; 4.186 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2224 ; 4.433 ; 3.282 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4D3F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1290062091. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69092 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.810 REMARK 200 RESOLUTION RANGE LOW (A) : 107.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.03000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.63000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3ZGY REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% (W/V) PEG 3350; 0.2M MGCL2; 0.1M REMARK 280 HEPES PH 7.5; PROTEIN AT 50 MG ML-1 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.61500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 107.25000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.39000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 107.25000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.61500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.39000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 2 REMARK 465 LYS A 3 REMARK 465 SER A 4 REMARK 465 ASN A 5 REMARK 465 SER A 6 REMARK 465 GLN A 7 REMARK 465 ASN A 8 REMARK 465 GLU A 9 REMARK 465 LYS A 10 REMARK 465 ASN A 11 REMARK 465 GLY A 12 REMARK 465 SER A 13 REMARK 465 GLU A 14 REMARK 465 THR A 15 REMARK 465 THR A 16 REMARK 465 ASN A 17 REMARK 465 ALA A 18 REMARK 465 VAL A 19 REMARK 465 GLY A 20 REMARK 465 ASN A 21 REMARK 465 ARG A 22 REMARK 465 SER A 307 REMARK 465 ASP A 308 REMARK 465 ILE A 309 REMARK 465 ARG A 310 REMARK 465 SER A 311 REMARK 465 MET B 2 REMARK 465 LYS B 3 REMARK 465 SER B 4 REMARK 465 ASN B 5 REMARK 465 SER B 6 REMARK 465 GLN B 7 REMARK 465 ASN B 8 REMARK 465 GLU B 9 REMARK 465 LYS B 10 REMARK 465 ASN B 11 REMARK 465 GLY B 12 REMARK 465 SER B 13 REMARK 465 GLU B 14 REMARK 465 THR B 15 REMARK 465 THR B 16 REMARK 465 ASN B 17 REMARK 465 SER B 307 REMARK 465 ASP B 308 REMARK 465 ILE B 309 REMARK 465 ARG B 310 REMARK 465 SER B 311 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 23 CE NZ REMARK 470 GLU A 43 CG CD OE1 OE2 REMARK 470 LYS A 57 CE NZ REMARK 470 GLN A 60 CG CD OE1 NE2 REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 LYS A 118 CE NZ REMARK 470 LYS A 121 CE NZ REMARK 470 LYS A 124 CE NZ REMARK 470 ASP A 157 CG OD1 OD2 REMARK 470 LYS A 232 CG CD CE NZ REMARK 470 LYS A 305 CG CD CE NZ REMARK 470 GLU B 101 CG CD OE1 OE2 REMARK 470 LYS B 121 CE NZ REMARK 470 LYS B 124 CE NZ REMARK 470 LYS B 147 NZ REMARK 470 GLU B 179 CG CD OE1 OE2 REMARK 470 GLU B 217 OE1 OE2 REMARK 470 MET B 255 CE REMARK 470 GLU B 282 CG CD OE1 OE2 REMARK 470 LYS B 289 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 269 CD GLU A 269 OE1 0.096 REMARK 500 THR B 279 CB THR B 279 CG2 -0.263 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 177 NE - CZ - NH1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG A 177 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 ASP A 180 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 LEU A 183 CB - CG - CD1 ANGL. DEV. = 10.6 DEGREES REMARK 500 MET A 185 CG - SD - CE ANGL. DEV. = -12.7 DEGREES REMARK 500 ARG A 286 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 286 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG B 165 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 165 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 177 NE - CZ - NH1 ANGL. DEV. = 6.9 DEGREES REMARK 500 ARG B 177 NE - CZ - NH2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP B 180 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG B 252 NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG B 252 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 85 74.79 -109.80 REMARK 500 LYS B 23 49.84 -90.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 305 ASN A 306 140.74 REMARK 500 LEU B 30 GLY B 31 149.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2062 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH B2091 DISTANCE = 6.71 ANGSTROMS REMARK 525 HOH B2131 DISTANCE = 5.83 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP B 1307 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4D3D RELATED DB: PDB REMARK 900 STRUCTURE OF IMINE REDUCTASE BCSIRED FROM BACILLUS CEREUS BAG3X2 REMARK 900 RELATED ID: 4D3S RELATED DB: PDB REMARK 900 IMINE REDUCTASE FROM NOCARDIOPSIS HALOPHILA DBREF 4D3F A 2 311 PDB 4D3F 4D3F 2 311 DBREF 4D3F B 2 311 PDB 4D3F 4D3F 2 311 SEQRES 1 A 310 MET LYS SER ASN SER GLN ASN GLU LYS ASN GLY SER GLU SEQRES 2 A 310 THR THR ASN ALA VAL GLY ASN ARG LYS SER VAL THR VAL SEQRES 3 A 310 ILE GLY LEU GLY PRO MET GLY GLN ALA MET ALA ASP VAL SEQRES 4 A 310 PHE LEU GLU TYR GLY TYR SER VAL THR VAL TRP ASN ARG SEQRES 5 A 310 THR SER SER LYS ALA ASP GLN LEU VAL ALA LYS GLY ALA SEQRES 6 A 310 ILE ARG VAL SER THR VAL ASN GLU ALA LEU ALA ALA ASN SEQRES 7 A 310 GLU LEU VAL ILE LEU SER LEU THR ASP TYR ASN VAL MET SEQRES 8 A 310 TYR SER ILE LEU GLU PRO VAL SER GLU ASN LEU PHE GLY SEQRES 9 A 310 LYS VAL LEU VAL ASN LEU SER SER ASP THR PRO GLU LYS SEQRES 10 A 310 ALA ARG LYS ALA ALA LYS TRP LEU GLU ASP ARG GLY ALA SEQRES 11 A 310 ARG HIS ILE THR GLY GLY VAL GLN VAL PRO PRO SER GLY SEQRES 12 A 310 ILE GLY LYS SER GLU SER TYR THR TYR TYR SER GLY ASP SEQRES 13 A 310 ARG VAL VAL PHE GLU ALA HIS ARG GLU THR LEU GLU VAL SEQRES 14 A 310 LEU THR SER SER ASP TYR ARG GLY GLU ASP PRO GLY LEU SEQRES 15 A 310 ALA MET LEU TYR TYR GLN ILE GLN MET ASP ILE PHE TRP SEQRES 16 A 310 THR ALA MET LEU SER TYR LEU HIS ALA LEU ALA ILE ALA SEQRES 17 A 310 ASN ALA ASN GLY ILE THR ALA GLU GLN PHE LEU PRO TYR SEQRES 18 A 310 ALA SER ALA MET MET SER SER LEU PRO LYS PHE VAL GLU SEQRES 19 A 310 PHE TYR THR PRO ARG LEU ASP GLU GLY GLU HIS PRO GLY SEQRES 20 A 310 ASP VAL ASP ARG LEU ALA MET GLY LEU ALA SER VAL GLU SEQRES 21 A 310 HIS VAL VAL HIS THR THR GLN GLU ALA GLY ILE ASP ILE SEQRES 22 A 310 ALA LEU PRO ALA THR VAL LEU GLU VAL PHE ARG ARG GLY SEQRES 23 A 310 MET LYS THR GLY HIS ALA SER ASP SER PHE THR SER LEU SEQRES 24 A 310 ILE GLU ILE PHE LYS ASN SER ASP ILE ARG SER SEQRES 1 B 310 MET LYS SER ASN SER GLN ASN GLU LYS ASN GLY SER GLU SEQRES 2 B 310 THR THR ASN ALA VAL GLY ASN ARG LYS SER VAL THR VAL SEQRES 3 B 310 ILE GLY LEU GLY PRO MET GLY GLN ALA MET ALA ASP VAL SEQRES 4 B 310 PHE LEU GLU TYR GLY TYR SER VAL THR VAL TRP ASN ARG SEQRES 5 B 310 THR SER SER LYS ALA ASP GLN LEU VAL ALA LYS GLY ALA SEQRES 6 B 310 ILE ARG VAL SER THR VAL ASN GLU ALA LEU ALA ALA ASN SEQRES 7 B 310 GLU LEU VAL ILE LEU SER LEU THR ASP TYR ASN VAL MET SEQRES 8 B 310 TYR SER ILE LEU GLU PRO VAL SER GLU ASN LEU PHE GLY SEQRES 9 B 310 LYS VAL LEU VAL ASN LEU SER SER ASP THR PRO GLU LYS SEQRES 10 B 310 ALA ARG LYS ALA ALA LYS TRP LEU GLU ASP ARG GLY ALA SEQRES 11 B 310 ARG HIS ILE THR GLY GLY VAL GLN VAL PRO PRO SER GLY SEQRES 12 B 310 ILE GLY LYS SER GLU SER TYR THR TYR TYR SER GLY ASP SEQRES 13 B 310 ARG VAL VAL PHE GLU ALA HIS ARG GLU THR LEU GLU VAL SEQRES 14 B 310 LEU THR SER SER ASP TYR ARG GLY GLU ASP PRO GLY LEU SEQRES 15 B 310 ALA MET LEU TYR TYR GLN ILE GLN MET ASP ILE PHE TRP SEQRES 16 B 310 THR ALA MET LEU SER TYR LEU HIS ALA LEU ALA ILE ALA SEQRES 17 B 310 ASN ALA ASN GLY ILE THR ALA GLU GLN PHE LEU PRO TYR SEQRES 18 B 310 ALA SER ALA MET MET SER SER LEU PRO LYS PHE VAL GLU SEQRES 19 B 310 PHE TYR THR PRO ARG LEU ASP GLU GLY GLU HIS PRO GLY SEQRES 20 B 310 ASP VAL ASP ARG LEU ALA MET GLY LEU ALA SER VAL GLU SEQRES 21 B 310 HIS VAL VAL HIS THR THR GLN GLU ALA GLY ILE ASP ILE SEQRES 22 B 310 ALA LEU PRO ALA THR VAL LEU GLU VAL PHE ARG ARG GLY SEQRES 23 B 310 MET LYS THR GLY HIS ALA SER ASP SER PHE THR SER LEU SEQRES 24 B 310 ILE GLU ILE PHE LYS ASN SER ASP ILE ARG SER HET NAP B1307 48 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 NAP C21 H28 N7 O17 P3 FORMUL 4 HOH *355(H2 O) HELIX 1 1 GLY A 31 TYR A 44 1 14 HELIX 2 2 THR A 54 LYS A 57 5 4 HELIX 3 3 ALA A 58 LYS A 64 1 7 HELIX 4 4 THR A 71 ASN A 79 1 9 HELIX 5 5 ASP A 88 GLU A 97 1 10 HELIX 6 6 PRO A 98 LEU A 103 5 6 HELIX 7 7 THR A 115 ARG A 129 1 15 HELIX 8 8 PRO A 141 ILE A 145 5 5 HELIX 9 9 ASP A 157 LEU A 171 1 15 HELIX 10 10 GLY A 182 ASN A 212 1 31 HELIX 11 11 THR A 215 GLY A 244 1 30 HELIX 12 12 ARG A 252 ALA A 270 1 19 HELIX 13 13 ILE A 274 LYS A 289 1 16 HELIX 14 14 SER A 296 SER A 299 5 4 HELIX 15 15 LEU A 300 ASN A 306 1 7 HELIX 16 16 GLY B 31 GLY B 45 1 15 HELIX 17 17 THR B 54 LYS B 57 5 4 HELIX 18 18 ALA B 58 LYS B 64 1 7 HELIX 19 19 THR B 71 ASN B 79 1 9 HELIX 20 20 ASP B 88 GLU B 97 1 10 HELIX 21 21 PRO B 98 PHE B 104 5 7 HELIX 22 22 THR B 115 ASP B 128 1 14 HELIX 23 23 PRO B 141 ILE B 145 5 5 HELIX 24 24 ASP B 157 LEU B 171 1 15 HELIX 25 25 GLY B 182 ASN B 212 1 31 HELIX 26 26 THR B 215 GLY B 244 1 30 HELIX 27 27 ARG B 252 ALA B 270 1 19 HELIX 28 28 ILE B 274 THR B 290 1 17 HELIX 29 29 SER B 296 SER B 299 5 4 HELIX 30 30 LEU B 300 ASN B 306 1 7 SHEET 1 AA 8 ILE A 67 ARG A 68 0 SHEET 2 AA 8 SER A 47 TRP A 51 1 O VAL A 48 N ILE A 67 SHEET 3 AA 8 SER A 24 ILE A 28 1 O VAL A 25 N THR A 49 SHEET 4 AA 8 LEU A 81 LEU A 84 1 O LEU A 81 N THR A 26 SHEET 5 AA 8 VAL A 107 ASN A 110 1 O VAL A 107 N VAL A 82 SHEET 6 AA 8 ARG A 132 VAL A 138 1 O ARG A 132 N LEU A 108 SHEET 7 AA 8 LYS A 147 GLY A 156 -1 O TYR A 153 N GLY A 137 SHEET 8 AA 8 THR A 172 GLY A 178 1 O SER A 173 N THR A 152 SHEET 1 BA 8 ILE B 67 ARG B 68 0 SHEET 2 BA 8 SER B 47 TRP B 51 1 O VAL B 48 N ILE B 67 SHEET 3 BA 8 SER B 24 ILE B 28 1 O VAL B 25 N THR B 49 SHEET 4 BA 8 LEU B 81 LEU B 84 1 O LEU B 81 N THR B 26 SHEET 5 BA 8 VAL B 107 ASN B 110 1 O VAL B 107 N VAL B 82 SHEET 6 BA 8 ARG B 132 VAL B 138 1 O ARG B 132 N LEU B 108 SHEET 7 BA 8 LYS B 147 GLY B 156 -1 O TYR B 153 N GLY B 137 SHEET 8 BA 8 THR B 172 TYR B 176 1 O SER B 173 N THR B 152 SITE 1 AC1 28 LYS B 23 GLY B 29 LEU B 30 GLY B 31 SITE 2 AC1 28 PRO B 32 MET B 33 ASN B 52 ARG B 53 SITE 3 AC1 28 THR B 54 LYS B 57 SER B 85 LEU B 86 SITE 4 AC1 28 THR B 87 VAL B 91 SER B 112 SER B 113 SITE 5 AC1 28 VAL B 138 VAL B 140 PRO B 141 PRO B 142 SITE 6 AC1 28 HOH B2014 HOH B2042 HOH B2068 HOH B2178 SITE 7 AC1 28 HOH B2179 HOH B2180 HOH B2181 HOH B2183 CRYST1 55.230 62.780 214.500 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018106 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015929 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004662 0.00000 MTRIX1 1 -0.756300 -0.604600 0.249900 -16.57000 1 MTRIX2 1 -0.632600 0.578500 -0.515000 -20.97000 1 MTRIX3 1 0.166800 -0.547600 -0.820000 -42.71000 1