data_4D3L # _entry.id 4D3L # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4D3L PDBE EBI-62113 WWPDB D_1290062113 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4V2X _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'HIGH RESOLUTION STRUCTURE OF THE FULL LENGTH TRI- MODULAR ENDO-BETA-1,4-GLUCANASE B (CEL5B) FROM BACILLUS HALODURANS' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4D3L _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2014-10-22 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Venditto, I.' 1 'Goyal, A.' 2 'Thompson, A.' 3 'Ferreira, L.M.A.' 4 'Fontes, C.M.G.A.' 5 'Najmudin, S.' 6 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Complexity of the Ruminococcus Flavefaciens Cellulosome Reflects an Expansion in Glycan Recognition.' Proc.Natl.Acad.Sci.USA 113 7136 ? 2016 PNASA6 US 0027-8424 0040 ? 27298375 10.1073/PNAS.1601558113 1 ;Crystallization and Preliminary Crystallographic Studies of a Novel, Non-Catalytic Carbohydrate- Binding Module from Ruminococcus Flavefaciens Cellulosome. ; 'Acta Crystallogr.,Sect.F' 71 45 ? 2015 ? DK 1744-3091 ? ? 25615967 10.1107/S2053230X14025576 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Venditto, I.' 1 primary 'Luis, A.S.' 2 primary 'Rydahl, M.' 3 primary 'Schuckel, J.' 4 primary 'Fernandes, V.O.' 5 primary 'Vidal-Melgosa, S.' 6 primary 'Bule, P.' 7 primary 'Goyal, A.' 8 primary 'Pires, V.M.R.' 9 primary 'Dourado, C.G.' 10 primary 'Ferreira, L.M.A.' 11 primary 'Coutinho, P.M.' 12 primary 'Henrissat, B.' 13 primary 'Knox, J.P.' 14 primary 'Basle, A.' 15 primary 'Najmudin, S.' 16 primary 'Gilbert, H.J.' 17 primary 'Willats, W.G.T.' 18 primary 'Fontes, C.M.G.A.' 19 1 'Venditto, I.' 20 1 'Goyal, A.' 21 1 'Thompson, A.' 22 1 'Ferreira, L.M.A.' 23 1 'Fontes, C.M.G.A.' 24 1 'Najmudin, S.' 25 # _cell.entry_id 4D3L _cell.length_a 102.302 _cell.length_b 103.345 _cell.length_c 109.067 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4D3L _symmetry.space_group_name_H-M 'I 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'CARBOHYDRATE BINDING MODULE' 15470.633 3 ? ? 'CARBOHYDRATE BINDING MODULE, RESIDUES 492-629' 'SELENO-METHIONINE DERIVATIVE' 2 non-polymer syn 'NONAETHYLENE GLYCOL' 414.488 1 ? ? ? ? 3 non-polymer syn 'HEXAETHYLENE GLYCOL' 282.331 1 ? ? ? ? 4 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 5 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 6 non-polymer syn 'DI(HYDROXYETHYL)ETHER' 106.120 2 ? ? ? ? 7 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 8 non-polymer syn 'TETRAETHYLENE GLYCOL' 194.226 1 ? ? ? ? 9 non-polymer syn '(3S)-3-HYDROXYHEPTANEDIOIC ACID' 176.167 1 ? ? ? ? 10 water nat water 18.015 235 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)ASDGYTIKPNKKVTYSALGEDER(MSE)IGFSYKDFGISSSEKITEVQVNISANKNIGKYVGQFGTSTTDSANGY WA(MSE)GDEITQSISGNSGTITWKVPSDISSIIQTQYGGEIKFGVWWIDCDEFTIDSVVLKLEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MASDGYTIKPNKKVTYSALGEDERMIGFSYKDFGISSSEKITEVQVNISANKNIGKYVGQFGTSTTDSANGYWAMGDEIT QSISGNSGTITWKVPSDISSIIQTQYGGEIKFGVWWIDCDEFTIDSVVLKLEHHHHHH ; _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 ALA n 1 3 SER n 1 4 ASP n 1 5 GLY n 1 6 TYR n 1 7 THR n 1 8 ILE n 1 9 LYS n 1 10 PRO n 1 11 ASN n 1 12 LYS n 1 13 LYS n 1 14 VAL n 1 15 THR n 1 16 TYR n 1 17 SER n 1 18 ALA n 1 19 LEU n 1 20 GLY n 1 21 GLU n 1 22 ASP n 1 23 GLU n 1 24 ARG n 1 25 MSE n 1 26 ILE n 1 27 GLY n 1 28 PHE n 1 29 SER n 1 30 TYR n 1 31 LYS n 1 32 ASP n 1 33 PHE n 1 34 GLY n 1 35 ILE n 1 36 SER n 1 37 SER n 1 38 SER n 1 39 GLU n 1 40 LYS n 1 41 ILE n 1 42 THR n 1 43 GLU n 1 44 VAL n 1 45 GLN n 1 46 VAL n 1 47 ASN n 1 48 ILE n 1 49 SER n 1 50 ALA n 1 51 ASN n 1 52 LYS n 1 53 ASN n 1 54 ILE n 1 55 GLY n 1 56 LYS n 1 57 TYR n 1 58 VAL n 1 59 GLY n 1 60 GLN n 1 61 PHE n 1 62 GLY n 1 63 THR n 1 64 SER n 1 65 THR n 1 66 THR n 1 67 ASP n 1 68 SER n 1 69 ALA n 1 70 ASN n 1 71 GLY n 1 72 TYR n 1 73 TRP n 1 74 ALA n 1 75 MSE n 1 76 GLY n 1 77 ASP n 1 78 GLU n 1 79 ILE n 1 80 THR n 1 81 GLN n 1 82 SER n 1 83 ILE n 1 84 SER n 1 85 GLY n 1 86 ASN n 1 87 SER n 1 88 GLY n 1 89 THR n 1 90 ILE n 1 91 THR n 1 92 TRP n 1 93 LYS n 1 94 VAL n 1 95 PRO n 1 96 SER n 1 97 ASP n 1 98 ILE n 1 99 SER n 1 100 SER n 1 101 ILE n 1 102 ILE n 1 103 GLN n 1 104 THR n 1 105 GLN n 1 106 TYR n 1 107 GLY n 1 108 GLY n 1 109 GLU n 1 110 ILE n 1 111 LYS n 1 112 PHE n 1 113 GLY n 1 114 VAL n 1 115 TRP n 1 116 TRP n 1 117 ILE n 1 118 ASP n 1 119 CYS n 1 120 ASP n 1 121 GLU n 1 122 PHE n 1 123 THR n 1 124 ILE n 1 125 ASP n 1 126 SER n 1 127 VAL n 1 128 VAL n 1 129 LEU n 1 130 LYS n 1 131 LEU n 1 132 GLU n 1 133 HIS n 1 134 HIS n 1 135 HIS n 1 136 HIS n 1 137 HIS n 1 138 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain FD-1 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'RUMINOCOCCUS FLAVEFACIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 641112 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI B' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 37762 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'B834(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET-28A _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4D3L _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession 4D3L _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4D3L A 1 ? 138 ? 4D3L 492 ? 629 ? 492 629 2 1 4D3L B 1 ? 138 ? 4D3L 492 ? 629 ? 492 629 3 1 4D3L C 1 ? 138 ? 4D3L 492 ? 629 ? 492 629 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2PE non-polymer . 'NONAETHYLENE GLYCOL' ? 'C18 H38 O10' 414.488 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HHD non-polymer . '(3S)-3-HYDROXYHEPTANEDIOIC ACID' ? 'C7 H12 O5' 176.167 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 P6G non-polymer . 'HEXAETHYLENE GLYCOL' 'POLYETHYLENE GLYCOL PEG400' 'C12 H26 O7' 282.331 PEG non-polymer . 'DI(HYDROXYETHYL)ETHER' ? 'C4 H10 O3' 106.120 PG4 non-polymer . 'TETRAETHYLENE GLYCOL' ? 'C8 H18 O5' 194.226 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4D3L _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.19 _exptl_crystal.density_percent_sol 61 _exptl_crystal.description 'PHASER SAD AND PARROT WERE ALSO USED.' # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.2 M SODIUM CITRATE, 2 M AMMONIUM SULPHATE. CRYOPROTECTANT USED PARATONE N, pH 7.0' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2013-07-18 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97895 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SOLEIL BEAMLINE PROXIMA 1' _diffrn_source.pdbx_synchrotron_site SOLEIL _diffrn_source.pdbx_synchrotron_beamline 'PROXIMA 1' _diffrn_source.pdbx_wavelength 0.97895 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4D3L _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 43.63 _reflns.d_resolution_high 2.00 _reflns.number_obs 37050 _reflns.number_all ? _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.16 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 5.20 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.7 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.11 _reflns_shell.percent_possible_all 69.9 _reflns_shell.Rmerge_I_obs 0.69 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 0.90 _reflns_shell.pdbx_redundancy 2.2 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4D3L _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 35182 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 75.02 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 93.62 _refine.ls_R_factor_obs 0.21362 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.21201 _refine.ls_R_factor_R_free 0.24523 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1848 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.936 _refine.correlation_coeff_Fo_to_Fc_free 0.915 _refine.B_iso_mean 35.825 _refine.aniso_B[1][1] -0.10 _refine.aniso_B[2][2] 0.81 _refine.aniso_B[3][3] -0.71 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.90 _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES WITH TLS ADDED WITH EACH MONOMER DEFINED AS A SINLGE TLS GROUP. PDB_REDO WAS USED IN TH PENULTIMATE REFINEMET ROUND. ; _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.176 _refine.pdbx_overall_ESU_R_Free 0.159 _refine.overall_SU_ML 0.137 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 10.187 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3054 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 77 _refine_hist.number_atoms_solvent 235 _refine_hist.number_atoms_total 3366 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 75.02 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.010 0.020 ? 3281 'X-RAY DIFFRACTION' ? r_bond_other_d 0.005 0.020 ? 3030 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.414 1.947 ? 4435 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.037 3.000 ? 7056 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.454 5.000 ? 426 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 38.992 26.071 ? 140 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.868 15.000 ? 547 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 26.194 15.000 ? 3 'X-RAY DIFFRACTION' ? r_chiral_restr 0.081 0.200 ? 483 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.020 ? 3709 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.005 0.020 ? 722 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.856 2.483 ? 1610 'X-RAY DIFFRACTION' ? r_mcbond_other 1.857 2.479 ? 1608 'X-RAY DIFFRACTION' ? r_mcangle_it 2.751 3.705 ? 2015 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.643 2.849 ? 1669 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.997 _refine_ls_shell.d_res_low 2.049 _refine_ls_shell.number_reflns_R_work 1731 _refine_ls_shell.R_factor_R_work 0.392 _refine_ls_shell.percent_reflns_obs 62.57 _refine_ls_shell.R_factor_R_free 0.390 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 83 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 4D3L _struct.title ;SeMet structure of a novel carbohydrate binding module from glycoside hydrolase family 9 (Cel9A) from Ruminococcus flavefaciens FD-1 in the orthorhombic form ; _struct.pdbx_descriptor 'CARBOHYDRATE BINDING MODULE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4D3L _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' _struct_keywords.text ;SUGAR BINDING PROTEIN, CARBOHYDRATE BINDING MODULE, GLYCOSIDE HYDROLASE FAMILY 9, CEL9A, CELLULOSOME, RUMINOCOCCUS FLAVEFACIENS FD-1 ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 5 ? H N N 6 ? I N N 7 ? J N N 6 ? K N N 8 ? L N N 9 ? M N N 10 ? N N N 10 ? O N N 10 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 17 ? LEU A 19 ? SER A 508 LEU A 510 5 ? 3 HELX_P HELX_P2 2 LYS A 31 ? PHE A 33 ? LYS A 522 PHE A 524 5 ? 3 HELX_P HELX_P3 3 ASP A 67 ? GLY A 71 ? ASP A 558 GLY A 562 5 ? 5 HELX_P HELX_P4 4 PRO A 95 ? SER A 100 ? PRO A 586 SER A 591 1 ? 6 HELX_P HELX_P5 5 SER B 17 ? LEU B 19 ? SER B 508 LEU B 510 5 ? 3 HELX_P HELX_P6 6 LYS B 31 ? PHE B 33 ? LYS B 522 PHE B 524 5 ? 3 HELX_P HELX_P7 7 ASP B 67 ? GLY B 71 ? ASP B 558 GLY B 562 5 ? 5 HELX_P HELX_P8 8 PRO B 95 ? SER B 100 ? PRO B 586 SER B 591 1 ? 6 HELX_P HELX_P9 9 SER C 17 ? LEU C 19 ? SER C 508 LEU C 510 5 ? 3 HELX_P HELX_P10 10 LYS C 31 ? PHE C 33 ? LYS C 522 PHE C 524 5 ? 3 HELX_P HELX_P11 11 ASP C 67 ? GLY C 71 ? ASP C 558 GLY C 562 5 ? 5 HELX_P HELX_P12 12 PRO C 95 ? SER C 100 ? PRO C 586 SER C 591 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ARG 24 C ? ? ? 1_555 A MSE 25 N ? ? A ARG 515 A MSE 516 1_555 ? ? ? ? ? ? ? 1.335 ? covale2 covale ? ? A MSE 25 C ? ? ? 1_555 A ILE 26 N ? ? A MSE 516 A ILE 517 1_555 ? ? ? ? ? ? ? 1.335 ? covale3 covale ? ? A ALA 74 C ? ? ? 1_555 A MSE 75 N ? ? A ALA 565 A MSE 566 1_555 ? ? ? ? ? ? ? 1.334 ? covale4 covale ? ? A MSE 75 C ? ? ? 1_555 A GLY 76 N ? ? A MSE 566 A GLY 567 1_555 ? ? ? ? ? ? ? 1.322 ? covale5 covale ? ? D 2PE . C2 ? ? ? 1_555 E P6G . O19 ? ? A 2PE 1626 A P6G 1627 1_555 ? ? ? ? ? ? ? 1.339 ? covale6 covale ? ? E P6G . O1 ? ? ? 1_555 F EDO . C2 ? ? A P6G 1627 A EDO 1628 1_555 ? ? ? ? ? ? ? 1.348 ? covale7 covale ? ? B ARG 24 C ? ? ? 1_555 B MSE 25 N ? ? B ARG 515 B MSE 516 1_555 ? ? ? ? ? ? ? 1.328 ? covale8 covale ? ? B MSE 25 C ? ? ? 1_555 B ILE 26 N ? ? B MSE 516 B ILE 517 1_555 ? ? ? ? ? ? ? 1.326 ? covale9 covale ? ? B ALA 74 C ? ? ? 1_555 B MSE 75 N ? ? B ALA 565 B MSE 566 1_555 ? ? ? ? ? ? ? 1.333 ? covale10 covale ? ? B MSE 75 C ? ? ? 1_555 B GLY 76 N ? ? B MSE 566 B GLY 567 1_555 ? ? ? ? ? ? ? 1.325 ? metalc1 metalc ? ? I CA . CA ? ? ? 1_555 N HOH . O ? ? B CA 1631 B HOH 2026 1_555 ? ? ? ? ? ? ? 1.935 ? covale11 covale ? ? C ARG 24 C ? ? ? 1_555 C MSE 25 N ? ? C ARG 515 C MSE 516 1_555 ? ? ? ? ? ? ? 1.331 ? covale12 covale ? ? C MSE 25 C ? ? ? 1_555 C ILE 26 N ? ? C MSE 516 C ILE 517 1_555 ? ? ? ? ? ? ? 1.329 ? covale13 covale ? ? C ALA 74 C ? ? ? 1_555 C MSE 75 N ? ? C ALA 565 C MSE 566 1_555 ? ? ? ? ? ? ? 1.326 ? covale14 covale ? ? C MSE 75 C ? ? ? 1_555 C GLY 76 N ? ? C MSE 566 C GLY 567 1_555 ? ? ? ? ? ? ? 1.322 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 2 ? AB ? 2 ? AC ? 4 ? AD ? 4 ? AE ? 4 ? AF ? 3 ? BA ? 2 ? BB ? 2 ? BC ? 4 ? BD ? 4 ? BE ? 4 ? BF ? 3 ? CA ? 2 ? CB ? 2 ? CC ? 4 ? CD ? 4 ? CE ? 4 ? CF ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AB 1 2 ? parallel AC 1 2 ? anti-parallel AC 2 3 ? anti-parallel AC 3 4 ? parallel AD 1 2 ? anti-parallel AD 2 3 ? anti-parallel AD 3 4 ? anti-parallel AE 1 2 ? anti-parallel AE 2 3 ? anti-parallel AE 3 4 ? anti-parallel AF 1 2 ? anti-parallel AF 2 3 ? anti-parallel BA 1 2 ? anti-parallel BB 1 2 ? parallel BC 1 2 ? anti-parallel BC 2 3 ? anti-parallel BC 3 4 ? parallel BD 1 2 ? anti-parallel BD 2 3 ? anti-parallel BD 3 4 ? anti-parallel BE 1 2 ? anti-parallel BE 2 3 ? anti-parallel BE 3 4 ? anti-parallel BF 1 2 ? anti-parallel BF 2 3 ? anti-parallel CA 1 2 ? anti-parallel CB 1 2 ? parallel CC 1 2 ? anti-parallel CC 2 3 ? anti-parallel CC 3 4 ? parallel CD 1 2 ? anti-parallel CD 2 3 ? anti-parallel CD 3 4 ? anti-parallel CE 1 2 ? anti-parallel CE 2 3 ? anti-parallel CE 3 4 ? anti-parallel CF 1 2 ? anti-parallel CF 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 GLY A 5 ? ILE A 8 ? GLY A 496 ILE A 499 AA 2 GLU A 121 ? GLU A 132 ? GLU A 612 GLU A 623 AB 1 LYS A 12 ? THR A 15 ? LYS A 503 THR A 506 AB 2 GLU A 121 ? GLU A 132 ? GLU A 612 GLU A 623 AC 1 SER A 87 ? LYS A 93 ? SER A 578 LYS A 584 AC 2 LYS A 40 ? SER A 49 ? LYS A 531 SER A 540 AC 3 GLU A 121 ? GLU A 132 ? GLU A 612 GLU A 623 AC 4 LYS A 12 ? THR A 15 ? LYS A 503 THR A 506 AD 1 SER A 87 ? LYS A 93 ? SER A 578 LYS A 584 AD 2 LYS A 40 ? SER A 49 ? LYS A 531 SER A 540 AD 3 GLU A 121 ? GLU A 132 ? GLU A 612 GLU A 623 AD 4 GLY A 5 ? ILE A 8 ? GLY A 496 ILE A 499 AE 1 MSE A 25 ? SER A 29 ? MSE A 516 SER A 520 AE 2 GLU A 109 ? GLY A 113 ? GLU A 600 GLY A 604 AE 3 PHE A 61 ? SER A 64 ? PHE A 552 SER A 555 AE 4 TRP A 73 ? MSE A 75 ? TRP A 564 MSE A 566 AF 1 ILE A 79 ? ILE A 83 ? ILE A 570 ILE A 574 AF 2 GLY A 55 ? GLY A 59 ? GLY A 546 GLY A 550 AF 3 TRP A 116 ? ILE A 117 ? TRP A 607 ILE A 608 BA 1 GLY B 5 ? ILE B 8 ? GLY B 496 ILE B 499 BA 2 GLU B 121 ? LEU B 131 ? GLU B 612 LEU B 622 BB 1 LYS B 12 ? THR B 15 ? LYS B 503 THR B 506 BB 2 GLU B 121 ? LEU B 131 ? GLU B 612 LEU B 622 BC 1 SER B 87 ? LYS B 93 ? SER B 578 LYS B 584 BC 2 ILE B 41 ? SER B 49 ? ILE B 532 SER B 540 BC 3 GLU B 121 ? LEU B 131 ? GLU B 612 LEU B 622 BC 4 LYS B 12 ? THR B 15 ? LYS B 503 THR B 506 BD 1 SER B 87 ? LYS B 93 ? SER B 578 LYS B 584 BD 2 ILE B 41 ? SER B 49 ? ILE B 532 SER B 540 BD 3 GLU B 121 ? LEU B 131 ? GLU B 612 LEU B 622 BD 4 GLY B 5 ? ILE B 8 ? GLY B 496 ILE B 499 BE 1 MSE B 25 ? SER B 29 ? MSE B 516 SER B 520 BE 2 GLU B 109 ? GLY B 113 ? GLU B 600 GLY B 604 BE 3 PHE B 61 ? SER B 64 ? PHE B 552 SER B 555 BE 4 TRP B 73 ? MSE B 75 ? TRP B 564 MSE B 566 BF 1 ILE B 79 ? ILE B 83 ? ILE B 570 ILE B 574 BF 2 GLY B 55 ? GLY B 59 ? GLY B 546 GLY B 550 BF 3 TRP B 116 ? ILE B 117 ? TRP B 607 ILE B 608 CA 1 GLY C 5 ? ILE C 8 ? GLY C 496 ILE C 499 CA 2 GLU C 121 ? LEU C 131 ? GLU C 612 LEU C 622 CB 1 LYS C 12 ? THR C 15 ? LYS C 503 THR C 506 CB 2 GLU C 121 ? LEU C 131 ? GLU C 612 LEU C 622 CC 1 SER C 87 ? LYS C 93 ? SER C 578 LYS C 584 CC 2 ILE C 41 ? SER C 49 ? ILE C 532 SER C 540 CC 3 GLU C 121 ? LEU C 131 ? GLU C 612 LEU C 622 CC 4 LYS C 12 ? THR C 15 ? LYS C 503 THR C 506 CD 1 SER C 87 ? LYS C 93 ? SER C 578 LYS C 584 CD 2 ILE C 41 ? SER C 49 ? ILE C 532 SER C 540 CD 3 GLU C 121 ? LEU C 131 ? GLU C 612 LEU C 622 CD 4 GLY C 5 ? ILE C 8 ? GLY C 496 ILE C 499 CE 1 MSE C 25 ? SER C 29 ? MSE C 516 SER C 520 CE 2 GLU C 109 ? GLY C 113 ? GLU C 600 GLY C 604 CE 3 PHE C 61 ? SER C 64 ? PHE C 552 SER C 555 CE 4 TRP C 73 ? MSE C 75 ? TRP C 564 MSE C 566 CF 1 ILE C 79 ? ILE C 83 ? ILE C 570 ILE C 574 CF 2 GLY C 55 ? GLY C 59 ? GLY C 546 GLY C 550 CF 3 TRP C 116 ? ILE C 117 ? TRP C 607 ILE C 608 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N ILE A 8 ? N ILE A 499 O VAL A 127 ? O VAL A 618 AB 1 2 N VAL A 14 ? N VAL A 505 O PHE A 122 ? O PHE A 613 AC 1 2 N TRP A 92 ? N TRP A 583 O VAL A 44 ? O VAL A 535 AC 2 3 N SER A 49 ? N SER A 540 O THR A 123 ? O THR A 614 AC 3 4 N ILE A 124 ? N ILE A 615 O LYS A 12 ? O LYS A 503 AD 1 2 N TRP A 92 ? N TRP A 583 O VAL A 44 ? O VAL A 535 AD 2 3 N SER A 49 ? N SER A 540 O THR A 123 ? O THR A 614 AD 3 4 N LEU A 129 ? N LEU A 620 O TYR A 6 ? O TYR A 497 AE 1 2 N PHE A 28 ? N PHE A 519 O ILE A 110 ? O ILE A 601 AE 2 3 N LYS A 111 ? N LYS A 602 O GLY A 62 ? O GLY A 553 AE 3 4 N THR A 63 ? N THR A 554 O ALA A 74 ? O ALA A 565 AF 1 2 N ILE A 83 ? N ILE A 574 O GLY A 55 ? O GLY A 546 AF 2 3 N VAL A 58 ? N VAL A 549 O TRP A 116 ? O TRP A 607 BA 1 2 N ILE B 8 ? N ILE B 499 O VAL B 127 ? O VAL B 618 BB 1 2 N VAL B 14 ? N VAL B 505 O PHE B 122 ? O PHE B 613 BC 1 2 N TRP B 92 ? N TRP B 583 O VAL B 44 ? O VAL B 535 BC 2 3 N SER B 49 ? N SER B 540 O THR B 123 ? O THR B 614 BC 3 4 N ILE B 124 ? N ILE B 615 O LYS B 12 ? O LYS B 503 BD 1 2 N TRP B 92 ? N TRP B 583 O VAL B 44 ? O VAL B 535 BD 2 3 N SER B 49 ? N SER B 540 O THR B 123 ? O THR B 614 BD 3 4 N LEU B 129 ? N LEU B 620 O TYR B 6 ? O TYR B 497 BE 1 2 N PHE B 28 ? N PHE B 519 O ILE B 110 ? O ILE B 601 BE 2 3 N LYS B 111 ? N LYS B 602 O GLY B 62 ? O GLY B 553 BE 3 4 N THR B 63 ? N THR B 554 O ALA B 74 ? O ALA B 565 BF 1 2 N ILE B 83 ? N ILE B 574 O GLY B 55 ? O GLY B 546 BF 2 3 N VAL B 58 ? N VAL B 549 O TRP B 116 ? O TRP B 607 CA 1 2 N ILE C 8 ? N ILE C 499 O VAL C 127 ? O VAL C 618 CB 1 2 N VAL C 14 ? N VAL C 505 O PHE C 122 ? O PHE C 613 CC 1 2 N TRP C 92 ? N TRP C 583 O VAL C 44 ? O VAL C 535 CC 2 3 N SER C 49 ? N SER C 540 O THR C 123 ? O THR C 614 CC 3 4 N ILE C 124 ? N ILE C 615 O LYS C 12 ? O LYS C 503 CD 1 2 N TRP C 92 ? N TRP C 583 O VAL C 44 ? O VAL C 535 CD 2 3 N SER C 49 ? N SER C 540 O THR C 123 ? O THR C 614 CD 3 4 N LEU C 129 ? N LEU C 620 O TYR C 6 ? O TYR C 497 CE 1 2 N PHE C 28 ? N PHE C 519 O ILE C 110 ? O ILE C 601 CE 2 3 N LYS C 111 ? N LYS C 602 O GLY C 62 ? O GLY C 553 CE 3 4 N THR C 63 ? N THR C 554 O ALA C 74 ? O ALA C 565 CF 1 2 N ILE C 83 ? N ILE C 574 O GLY C 55 ? O GLY C 546 CF 2 3 N VAL C 58 ? N VAL C 549 O TRP C 116 ? O TRP C 607 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE CA B 1631' AC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE PEG C 1625' AC3 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE GOL B 1625' AC4 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE PG4 C 1626' AC5 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE HHD C 1627' AC6 Software ? ? ? ? 12 'Binding site for residues 2PE A1626 and P6G A1627' AC7 Software ? ? ? ? 9 'Binding site for residues P6G A1627 and EDO A1628' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 LYS B 9 ? LYS B 500 . ? 8_544 ? 2 AC1 3 LYS B 130 ? LYS B 621 . ? 1_555 ? 3 AC1 3 HOH N . ? HOH B 2026 . ? 1_555 ? 4 AC2 6 GLU C 21 ? GLU C 512 . ? 1_555 ? 5 AC2 6 ARG C 24 ? ARG C 515 . ? 1_555 ? 6 AC2 6 TRP C 115 ? TRP C 606 . ? 1_555 ? 7 AC2 6 PG4 K . ? PG4 C 1626 . ? 8_554 ? 8 AC2 6 HOH O . ? HOH C 2058 . ? 1_555 ? 9 AC2 6 HOH O . ? HOH C 2059 . ? 1_555 ? 10 AC3 2 TYR B 72 ? TYR B 563 . ? 6_545 ? 11 AC3 2 TRP B 115 ? TRP B 606 . ? 1_555 ? 12 AC4 5 GLY C 71 ? GLY C 562 . ? 1_555 ? 13 AC4 5 TRP C 73 ? TRP C 564 . ? 1_555 ? 14 AC4 5 TYR C 106 ? TYR C 597 . ? 1_555 ? 15 AC4 5 PEG J . ? PEG C 1625 . ? 8_554 ? 16 AC4 5 HOH O . ? HOH C 2027 . ? 1_555 ? 17 AC5 2 TRP C 116 ? TRP C 607 . ? 1_555 ? 18 AC5 2 HOH O . ? HOH C 2060 . ? 1_555 ? 19 AC6 12 GLU A 21 ? GLU A 512 . ? 7_555 ? 20 AC6 12 ARG A 24 ? ARG A 515 . ? 7_555 ? 21 AC6 12 GLY A 71 ? GLY A 562 . ? 1_555 ? 22 AC6 12 TRP A 73 ? TRP A 564 . ? 1_555 ? 23 AC6 12 GLN A 103 ? GLN A 594 . ? 1_555 ? 24 AC6 12 TYR A 106 ? TYR A 597 . ? 1_555 ? 25 AC6 12 TRP A 115 ? TRP A 606 . ? 7_555 ? 26 AC6 12 EDO F . ? EDO A 1628 . ? 1_555 ? 27 AC6 12 HOH M . ? HOH A 2050 . ? 1_555 ? 28 AC6 12 HOH M . ? HOH A 2081 . ? 1_555 ? 29 AC6 12 HOH M . ? HOH A 2082 . ? 1_555 ? 30 AC6 12 HOH M . ? HOH A 2096 . ? 1_555 ? 31 AC7 9 GLU A 21 ? GLU A 512 . ? 7_555 ? 32 AC7 9 ARG A 24 ? ARG A 515 . ? 7_555 ? 33 AC7 9 TYR A 72 ? TYR A 563 . ? 1_555 ? 34 AC7 9 GLN A 103 ? GLN A 594 . ? 1_555 ? 35 AC7 9 TYR A 106 ? TYR A 597 . ? 1_555 ? 36 AC7 9 TRP A 115 ? TRP A 606 . ? 7_555 ? 37 AC7 9 2PE D . ? 2PE A 1626 . ? 1_555 ? 38 AC7 9 HOH M . ? HOH A 2081 . ? 1_555 ? 39 AC7 9 HOH M . ? HOH A 2082 . ? 1_555 ? # _database_PDB_matrix.entry_id 4D3L _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4D3L _atom_sites.fract_transf_matrix[1][1] 0.009775 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009676 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009169 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 492 ? ? ? A . n A 1 2 ALA 2 493 ? ? ? A . n A 1 3 SER 3 494 494 SER SER A . n A 1 4 ASP 4 495 495 ASP ASP A . n A 1 5 GLY 5 496 496 GLY GLY A . n A 1 6 TYR 6 497 497 TYR TYR A . n A 1 7 THR 7 498 498 THR THR A . n A 1 8 ILE 8 499 499 ILE ILE A . n A 1 9 LYS 9 500 500 LYS LYS A . n A 1 10 PRO 10 501 501 PRO PRO A . n A 1 11 ASN 11 502 502 ASN ASN A . n A 1 12 LYS 12 503 503 LYS LYS A . n A 1 13 LYS 13 504 504 LYS LYS A . n A 1 14 VAL 14 505 505 VAL VAL A . n A 1 15 THR 15 506 506 THR THR A . n A 1 16 TYR 16 507 507 TYR TYR A . n A 1 17 SER 17 508 508 SER SER A . n A 1 18 ALA 18 509 509 ALA ALA A . n A 1 19 LEU 19 510 510 LEU LEU A . n A 1 20 GLY 20 511 511 GLY GLY A . n A 1 21 GLU 21 512 512 GLU GLU A . n A 1 22 ASP 22 513 513 ASP ASP A . n A 1 23 GLU 23 514 514 GLU GLU A . n A 1 24 ARG 24 515 515 ARG ARG A . n A 1 25 MSE 25 516 516 MSE MSE A . n A 1 26 ILE 26 517 517 ILE ILE A . n A 1 27 GLY 27 518 518 GLY GLY A . n A 1 28 PHE 28 519 519 PHE PHE A . n A 1 29 SER 29 520 520 SER SER A . n A 1 30 TYR 30 521 521 TYR TYR A . n A 1 31 LYS 31 522 522 LYS LYS A . n A 1 32 ASP 32 523 523 ASP ASP A . n A 1 33 PHE 33 524 524 PHE PHE A . n A 1 34 GLY 34 525 525 GLY GLY A . n A 1 35 ILE 35 526 526 ILE ILE A . n A 1 36 SER 36 527 527 SER SER A . n A 1 37 SER 37 528 528 SER SER A . n A 1 38 SER 38 529 529 SER SER A . n A 1 39 GLU 39 530 530 GLU GLU A . n A 1 40 LYS 40 531 531 LYS LYS A . n A 1 41 ILE 41 532 532 ILE ILE A . n A 1 42 THR 42 533 533 THR THR A . n A 1 43 GLU 43 534 534 GLU GLU A . n A 1 44 VAL 44 535 535 VAL VAL A . n A 1 45 GLN 45 536 536 GLN GLN A . n A 1 46 VAL 46 537 537 VAL VAL A . n A 1 47 ASN 47 538 538 ASN ASN A . n A 1 48 ILE 48 539 539 ILE ILE A . n A 1 49 SER 49 540 540 SER SER A . n A 1 50 ALA 50 541 541 ALA ALA A . n A 1 51 ASN 51 542 542 ASN ASN A . n A 1 52 LYS 52 543 543 LYS LYS A . n A 1 53 ASN 53 544 544 ASN ASN A . n A 1 54 ILE 54 545 545 ILE ILE A . n A 1 55 GLY 55 546 546 GLY GLY A . n A 1 56 LYS 56 547 547 LYS LYS A . n A 1 57 TYR 57 548 548 TYR TYR A . n A 1 58 VAL 58 549 549 VAL VAL A . n A 1 59 GLY 59 550 550 GLY GLY A . n A 1 60 GLN 60 551 551 GLN GLN A . n A 1 61 PHE 61 552 552 PHE PHE A . n A 1 62 GLY 62 553 553 GLY GLY A . n A 1 63 THR 63 554 554 THR THR A . n A 1 64 SER 64 555 555 SER SER A . n A 1 65 THR 65 556 556 THR THR A . n A 1 66 THR 66 557 557 THR THR A . n A 1 67 ASP 67 558 558 ASP ASP A . n A 1 68 SER 68 559 559 SER SER A . n A 1 69 ALA 69 560 560 ALA ALA A . n A 1 70 ASN 70 561 561 ASN ASN A . n A 1 71 GLY 71 562 562 GLY GLY A . n A 1 72 TYR 72 563 563 TYR TYR A . n A 1 73 TRP 73 564 564 TRP TRP A . n A 1 74 ALA 74 565 565 ALA ALA A . n A 1 75 MSE 75 566 566 MSE MSE A . n A 1 76 GLY 76 567 567 GLY GLY A . n A 1 77 ASP 77 568 568 ASP ASP A . n A 1 78 GLU 78 569 569 GLU GLU A . n A 1 79 ILE 79 570 570 ILE ILE A . n A 1 80 THR 80 571 571 THR THR A . n A 1 81 GLN 81 572 572 GLN GLN A . n A 1 82 SER 82 573 573 SER SER A . n A 1 83 ILE 83 574 574 ILE ILE A . n A 1 84 SER 84 575 575 SER SER A . n A 1 85 GLY 85 576 576 GLY GLY A . n A 1 86 ASN 86 577 577 ASN ASN A . n A 1 87 SER 87 578 578 SER SER A . n A 1 88 GLY 88 579 579 GLY GLY A . n A 1 89 THR 89 580 580 THR THR A . n A 1 90 ILE 90 581 581 ILE ILE A . n A 1 91 THR 91 582 582 THR THR A . n A 1 92 TRP 92 583 583 TRP TRP A . n A 1 93 LYS 93 584 584 LYS LYS A . n A 1 94 VAL 94 585 585 VAL VAL A . n A 1 95 PRO 95 586 586 PRO PRO A . n A 1 96 SER 96 587 587 SER SER A . n A 1 97 ASP 97 588 588 ASP ASP A . n A 1 98 ILE 98 589 589 ILE ILE A . n A 1 99 SER 99 590 590 SER SER A . n A 1 100 SER 100 591 591 SER SER A . n A 1 101 ILE 101 592 592 ILE ILE A . n A 1 102 ILE 102 593 593 ILE ILE A . n A 1 103 GLN 103 594 594 GLN GLN A . n A 1 104 THR 104 595 595 THR THR A . n A 1 105 GLN 105 596 596 GLN GLN A . n A 1 106 TYR 106 597 597 TYR TYR A . n A 1 107 GLY 107 598 598 GLY GLY A . n A 1 108 GLY 108 599 599 GLY GLY A . n A 1 109 GLU 109 600 600 GLU GLU A . n A 1 110 ILE 110 601 601 ILE ILE A . n A 1 111 LYS 111 602 602 LYS LYS A . n A 1 112 PHE 112 603 603 PHE PHE A . n A 1 113 GLY 113 604 604 GLY GLY A . n A 1 114 VAL 114 605 605 VAL VAL A . n A 1 115 TRP 115 606 606 TRP TRP A . n A 1 116 TRP 116 607 607 TRP TRP A . n A 1 117 ILE 117 608 608 ILE ILE A . n A 1 118 ASP 118 609 609 ASP ASP A . n A 1 119 CYS 119 610 610 CYS CYS A . n A 1 120 ASP 120 611 611 ASP ASP A . n A 1 121 GLU 121 612 612 GLU GLU A . n A 1 122 PHE 122 613 613 PHE PHE A . n A 1 123 THR 123 614 614 THR THR A . n A 1 124 ILE 124 615 615 ILE ILE A . n A 1 125 ASP 125 616 616 ASP ASP A . n A 1 126 SER 126 617 617 SER SER A . n A 1 127 VAL 127 618 618 VAL VAL A . n A 1 128 VAL 128 619 619 VAL VAL A . n A 1 129 LEU 129 620 620 LEU LEU A . n A 1 130 LYS 130 621 621 LYS LYS A . n A 1 131 LEU 131 622 622 LEU LEU A . n A 1 132 GLU 132 623 623 GLU GLU A . n A 1 133 HIS 133 624 624 HIS HIS A . n A 1 134 HIS 134 625 625 HIS HIS A . n A 1 135 HIS 135 626 ? ? ? A . n A 1 136 HIS 136 627 ? ? ? A . n A 1 137 HIS 137 628 ? ? ? A . n A 1 138 HIS 138 629 ? ? ? A . n B 1 1 MSE 1 492 ? ? ? B . n B 1 2 ALA 2 493 ? ? ? B . n B 1 3 SER 3 494 494 SER SER B . n B 1 4 ASP 4 495 495 ASP ASP B . n B 1 5 GLY 5 496 496 GLY GLY B . n B 1 6 TYR 6 497 497 TYR TYR B . n B 1 7 THR 7 498 498 THR THR B . n B 1 8 ILE 8 499 499 ILE ILE B . n B 1 9 LYS 9 500 500 LYS LYS B . n B 1 10 PRO 10 501 501 PRO PRO B . n B 1 11 ASN 11 502 502 ASN ASN B . n B 1 12 LYS 12 503 503 LYS LYS B . n B 1 13 LYS 13 504 504 LYS LYS B . n B 1 14 VAL 14 505 505 VAL VAL B . n B 1 15 THR 15 506 506 THR THR B . n B 1 16 TYR 16 507 507 TYR TYR B . n B 1 17 SER 17 508 508 SER SER B . n B 1 18 ALA 18 509 509 ALA ALA B . n B 1 19 LEU 19 510 510 LEU LEU B . n B 1 20 GLY 20 511 511 GLY GLY B . n B 1 21 GLU 21 512 512 GLU GLU B . n B 1 22 ASP 22 513 513 ASP ASP B . n B 1 23 GLU 23 514 514 GLU GLU B . n B 1 24 ARG 24 515 515 ARG ARG B . n B 1 25 MSE 25 516 516 MSE MSE B . n B 1 26 ILE 26 517 517 ILE ILE B . n B 1 27 GLY 27 518 518 GLY GLY B . n B 1 28 PHE 28 519 519 PHE PHE B . n B 1 29 SER 29 520 520 SER SER B . n B 1 30 TYR 30 521 521 TYR TYR B . n B 1 31 LYS 31 522 522 LYS LYS B . n B 1 32 ASP 32 523 523 ASP ASP B . n B 1 33 PHE 33 524 524 PHE PHE B . n B 1 34 GLY 34 525 525 GLY GLY B . n B 1 35 ILE 35 526 526 ILE ILE B . n B 1 36 SER 36 527 527 SER SER B . n B 1 37 SER 37 528 528 SER SER B . n B 1 38 SER 38 529 529 SER SER B . n B 1 39 GLU 39 530 530 GLU GLU B . n B 1 40 LYS 40 531 531 LYS LYS B . n B 1 41 ILE 41 532 532 ILE ILE B . n B 1 42 THR 42 533 533 THR THR B . n B 1 43 GLU 43 534 534 GLU GLU B . n B 1 44 VAL 44 535 535 VAL VAL B . n B 1 45 GLN 45 536 536 GLN GLN B . n B 1 46 VAL 46 537 537 VAL VAL B . n B 1 47 ASN 47 538 538 ASN ASN B . n B 1 48 ILE 48 539 539 ILE ILE B . n B 1 49 SER 49 540 540 SER SER B . n B 1 50 ALA 50 541 541 ALA ALA B . n B 1 51 ASN 51 542 542 ASN ASN B . n B 1 52 LYS 52 543 543 LYS LYS B . n B 1 53 ASN 53 544 544 ASN ASN B . n B 1 54 ILE 54 545 545 ILE ILE B . n B 1 55 GLY 55 546 546 GLY GLY B . n B 1 56 LYS 56 547 547 LYS LYS B . n B 1 57 TYR 57 548 548 TYR TYR B . n B 1 58 VAL 58 549 549 VAL VAL B . n B 1 59 GLY 59 550 550 GLY GLY B . n B 1 60 GLN 60 551 551 GLN GLN B . n B 1 61 PHE 61 552 552 PHE PHE B . n B 1 62 GLY 62 553 553 GLY GLY B . n B 1 63 THR 63 554 554 THR THR B . n B 1 64 SER 64 555 555 SER SER B . n B 1 65 THR 65 556 556 THR THR B . n B 1 66 THR 66 557 557 THR THR B . n B 1 67 ASP 67 558 558 ASP ASP B . n B 1 68 SER 68 559 559 SER SER B . n B 1 69 ALA 69 560 560 ALA ALA B . n B 1 70 ASN 70 561 561 ASN ASN B . n B 1 71 GLY 71 562 562 GLY GLY B . n B 1 72 TYR 72 563 563 TYR TYR B . n B 1 73 TRP 73 564 564 TRP TRP B . n B 1 74 ALA 74 565 565 ALA ALA B . n B 1 75 MSE 75 566 566 MSE MSE B . n B 1 76 GLY 76 567 567 GLY GLY B . n B 1 77 ASP 77 568 568 ASP ASP B . n B 1 78 GLU 78 569 569 GLU GLU B . n B 1 79 ILE 79 570 570 ILE ILE B . n B 1 80 THR 80 571 571 THR THR B . n B 1 81 GLN 81 572 572 GLN GLN B . n B 1 82 SER 82 573 573 SER SER B . n B 1 83 ILE 83 574 574 ILE ILE B . n B 1 84 SER 84 575 575 SER SER B . n B 1 85 GLY 85 576 576 GLY GLY B . n B 1 86 ASN 86 577 577 ASN ASN B . n B 1 87 SER 87 578 578 SER SER B . n B 1 88 GLY 88 579 579 GLY GLY B . n B 1 89 THR 89 580 580 THR THR B . n B 1 90 ILE 90 581 581 ILE ILE B . n B 1 91 THR 91 582 582 THR THR B . n B 1 92 TRP 92 583 583 TRP TRP B . n B 1 93 LYS 93 584 584 LYS LYS B . n B 1 94 VAL 94 585 585 VAL VAL B . n B 1 95 PRO 95 586 586 PRO PRO B . n B 1 96 SER 96 587 587 SER SER B . n B 1 97 ASP 97 588 588 ASP ASP B . n B 1 98 ILE 98 589 589 ILE ILE B . n B 1 99 SER 99 590 590 SER SER B . n B 1 100 SER 100 591 591 SER SER B . n B 1 101 ILE 101 592 592 ILE ILE B . n B 1 102 ILE 102 593 593 ILE ILE B . n B 1 103 GLN 103 594 594 GLN GLN B . n B 1 104 THR 104 595 595 THR THR B . n B 1 105 GLN 105 596 596 GLN GLN B . n B 1 106 TYR 106 597 597 TYR TYR B . n B 1 107 GLY 107 598 598 GLY GLY B . n B 1 108 GLY 108 599 599 GLY GLY B . n B 1 109 GLU 109 600 600 GLU GLU B . n B 1 110 ILE 110 601 601 ILE ILE B . n B 1 111 LYS 111 602 602 LYS LYS B . n B 1 112 PHE 112 603 603 PHE PHE B . n B 1 113 GLY 113 604 604 GLY GLY B . n B 1 114 VAL 114 605 605 VAL VAL B . n B 1 115 TRP 115 606 606 TRP TRP B . n B 1 116 TRP 116 607 607 TRP TRP B . n B 1 117 ILE 117 608 608 ILE ILE B . n B 1 118 ASP 118 609 609 ASP ASP B . n B 1 119 CYS 119 610 610 CYS CYS B . n B 1 120 ASP 120 611 611 ASP ASP B . n B 1 121 GLU 121 612 612 GLU GLU B . n B 1 122 PHE 122 613 613 PHE PHE B . n B 1 123 THR 123 614 614 THR THR B . n B 1 124 ILE 124 615 615 ILE ILE B . n B 1 125 ASP 125 616 616 ASP ASP B . n B 1 126 SER 126 617 617 SER SER B . n B 1 127 VAL 127 618 618 VAL VAL B . n B 1 128 VAL 128 619 619 VAL VAL B . n B 1 129 LEU 129 620 620 LEU LEU B . n B 1 130 LYS 130 621 621 LYS LYS B . n B 1 131 LEU 131 622 622 LEU LEU B . n B 1 132 GLU 132 623 623 GLU GLU B . n B 1 133 HIS 133 624 624 HIS HIS B . n B 1 134 HIS 134 625 ? ? ? B . n B 1 135 HIS 135 626 ? ? ? B . n B 1 136 HIS 136 627 ? ? ? B . n B 1 137 HIS 137 628 ? ? ? B . n B 1 138 HIS 138 629 ? ? ? B . n C 1 1 MSE 1 492 ? ? ? C . n C 1 2 ALA 2 493 ? ? ? C . n C 1 3 SER 3 494 494 SER SER C . n C 1 4 ASP 4 495 495 ASP ASP C . n C 1 5 GLY 5 496 496 GLY GLY C . n C 1 6 TYR 6 497 497 TYR TYR C . n C 1 7 THR 7 498 498 THR THR C . n C 1 8 ILE 8 499 499 ILE ILE C . n C 1 9 LYS 9 500 500 LYS LYS C . n C 1 10 PRO 10 501 501 PRO PRO C . n C 1 11 ASN 11 502 502 ASN ASN C . n C 1 12 LYS 12 503 503 LYS LYS C . n C 1 13 LYS 13 504 504 LYS LYS C . n C 1 14 VAL 14 505 505 VAL VAL C . n C 1 15 THR 15 506 506 THR THR C . n C 1 16 TYR 16 507 507 TYR TYR C . n C 1 17 SER 17 508 508 SER SER C . n C 1 18 ALA 18 509 509 ALA ALA C . n C 1 19 LEU 19 510 510 LEU LEU C . n C 1 20 GLY 20 511 511 GLY GLY C . n C 1 21 GLU 21 512 512 GLU GLU C . n C 1 22 ASP 22 513 513 ASP ASP C . n C 1 23 GLU 23 514 514 GLU GLU C . n C 1 24 ARG 24 515 515 ARG ARG C . n C 1 25 MSE 25 516 516 MSE MSE C . n C 1 26 ILE 26 517 517 ILE ILE C . n C 1 27 GLY 27 518 518 GLY GLY C . n C 1 28 PHE 28 519 519 PHE PHE C . n C 1 29 SER 29 520 520 SER SER C . n C 1 30 TYR 30 521 521 TYR TYR C . n C 1 31 LYS 31 522 522 LYS LYS C . n C 1 32 ASP 32 523 523 ASP ASP C . n C 1 33 PHE 33 524 524 PHE PHE C . n C 1 34 GLY 34 525 525 GLY GLY C . n C 1 35 ILE 35 526 526 ILE ILE C . n C 1 36 SER 36 527 527 SER SER C . n C 1 37 SER 37 528 528 SER SER C . n C 1 38 SER 38 529 529 SER SER C . n C 1 39 GLU 39 530 530 GLU GLU C . n C 1 40 LYS 40 531 531 LYS LYS C . n C 1 41 ILE 41 532 532 ILE ILE C . n C 1 42 THR 42 533 533 THR THR C . n C 1 43 GLU 43 534 534 GLU GLU C . n C 1 44 VAL 44 535 535 VAL VAL C . n C 1 45 GLN 45 536 536 GLN GLN C . n C 1 46 VAL 46 537 537 VAL VAL C . n C 1 47 ASN 47 538 538 ASN ASN C . n C 1 48 ILE 48 539 539 ILE ILE C . n C 1 49 SER 49 540 540 SER SER C . n C 1 50 ALA 50 541 541 ALA ALA C . n C 1 51 ASN 51 542 542 ASN ASN C . n C 1 52 LYS 52 543 543 LYS LYS C . n C 1 53 ASN 53 544 544 ASN ASN C . n C 1 54 ILE 54 545 545 ILE ILE C . n C 1 55 GLY 55 546 546 GLY GLY C . n C 1 56 LYS 56 547 547 LYS LYS C . n C 1 57 TYR 57 548 548 TYR TYR C . n C 1 58 VAL 58 549 549 VAL VAL C . n C 1 59 GLY 59 550 550 GLY GLY C . n C 1 60 GLN 60 551 551 GLN GLN C . n C 1 61 PHE 61 552 552 PHE PHE C . n C 1 62 GLY 62 553 553 GLY GLY C . n C 1 63 THR 63 554 554 THR THR C . n C 1 64 SER 64 555 555 SER SER C . n C 1 65 THR 65 556 556 THR THR C . n C 1 66 THR 66 557 557 THR THR C . n C 1 67 ASP 67 558 558 ASP ASP C . n C 1 68 SER 68 559 559 SER SER C . n C 1 69 ALA 69 560 560 ALA ALA C . n C 1 70 ASN 70 561 561 ASN ASN C . n C 1 71 GLY 71 562 562 GLY GLY C . n C 1 72 TYR 72 563 563 TYR TYR C . n C 1 73 TRP 73 564 564 TRP TRP C . n C 1 74 ALA 74 565 565 ALA ALA C . n C 1 75 MSE 75 566 566 MSE MSE C . n C 1 76 GLY 76 567 567 GLY GLY C . n C 1 77 ASP 77 568 568 ASP ASP C . n C 1 78 GLU 78 569 569 GLU GLU C . n C 1 79 ILE 79 570 570 ILE ILE C . n C 1 80 THR 80 571 571 THR THR C . n C 1 81 GLN 81 572 572 GLN GLN C . n C 1 82 SER 82 573 573 SER SER C . n C 1 83 ILE 83 574 574 ILE ILE C . n C 1 84 SER 84 575 575 SER SER C . n C 1 85 GLY 85 576 576 GLY GLY C . n C 1 86 ASN 86 577 577 ASN ASN C . n C 1 87 SER 87 578 578 SER SER C . n C 1 88 GLY 88 579 579 GLY GLY C . n C 1 89 THR 89 580 580 THR THR C . n C 1 90 ILE 90 581 581 ILE ILE C . n C 1 91 THR 91 582 582 THR THR C . n C 1 92 TRP 92 583 583 TRP TRP C . n C 1 93 LYS 93 584 584 LYS LYS C . n C 1 94 VAL 94 585 585 VAL VAL C . n C 1 95 PRO 95 586 586 PRO PRO C . n C 1 96 SER 96 587 587 SER SER C . n C 1 97 ASP 97 588 588 ASP ASP C . n C 1 98 ILE 98 589 589 ILE ILE C . n C 1 99 SER 99 590 590 SER SER C . n C 1 100 SER 100 591 591 SER SER C . n C 1 101 ILE 101 592 592 ILE ILE C . n C 1 102 ILE 102 593 593 ILE ILE C . n C 1 103 GLN 103 594 594 GLN GLN C . n C 1 104 THR 104 595 595 THR THR C . n C 1 105 GLN 105 596 596 GLN GLN C . n C 1 106 TYR 106 597 597 TYR TYR C . n C 1 107 GLY 107 598 598 GLY GLY C . n C 1 108 GLY 108 599 599 GLY GLY C . n C 1 109 GLU 109 600 600 GLU GLU C . n C 1 110 ILE 110 601 601 ILE ILE C . n C 1 111 LYS 111 602 602 LYS LYS C . n C 1 112 PHE 112 603 603 PHE PHE C . n C 1 113 GLY 113 604 604 GLY GLY C . n C 1 114 VAL 114 605 605 VAL VAL C . n C 1 115 TRP 115 606 606 TRP TRP C . n C 1 116 TRP 116 607 607 TRP TRP C . n C 1 117 ILE 117 608 608 ILE ILE C . n C 1 118 ASP 118 609 609 ASP ASP C . n C 1 119 CYS 119 610 610 CYS CYS C . n C 1 120 ASP 120 611 611 ASP ASP C . n C 1 121 GLU 121 612 612 GLU GLU C . n C 1 122 PHE 122 613 613 PHE PHE C . n C 1 123 THR 123 614 614 THR THR C . n C 1 124 ILE 124 615 615 ILE ILE C . n C 1 125 ASP 125 616 616 ASP ASP C . n C 1 126 SER 126 617 617 SER SER C . n C 1 127 VAL 127 618 618 VAL VAL C . n C 1 128 VAL 128 619 619 VAL VAL C . n C 1 129 LEU 129 620 620 LEU LEU C . n C 1 130 LYS 130 621 621 LYS LYS C . n C 1 131 LEU 131 622 622 LEU LEU C . n C 1 132 GLU 132 623 623 GLU GLU C . n C 1 133 HIS 133 624 624 HIS HIS C . n C 1 134 HIS 134 625 ? ? ? C . n C 1 135 HIS 135 626 ? ? ? C . n C 1 136 HIS 136 627 ? ? ? C . n C 1 137 HIS 137 628 ? ? ? C . n C 1 138 HIS 138 629 ? ? ? C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 2PE 1 1626 1626 2PE 2PE A . E 3 P6G 1 1627 1627 P6G P6G A . F 4 EDO 1 1628 1628 EDO EDO A . G 5 GOL 1 1625 1625 GOL GOL B . H 6 PEG 1 1630 1630 PEG PEG B . I 7 CA 1 1631 1631 CA CA B . J 6 PEG 1 1625 1625 PEG PEG C . K 8 PG4 1 1626 1626 PG4 PG4 C . L 9 HHD 1 1627 1627 HHD HHD C . M 10 HOH 1 2001 2001 HOH HOH A . M 10 HOH 2 2002 2002 HOH HOH A . M 10 HOH 3 2003 2003 HOH HOH A . M 10 HOH 4 2004 2004 HOH HOH A . M 10 HOH 5 2005 2005 HOH HOH A . M 10 HOH 6 2006 2006 HOH HOH A . M 10 HOH 7 2007 2007 HOH HOH A . M 10 HOH 8 2008 2008 HOH HOH A . M 10 HOH 9 2009 2009 HOH HOH A . M 10 HOH 10 2010 2010 HOH HOH A . M 10 HOH 11 2011 2011 HOH HOH A . M 10 HOH 12 2012 2012 HOH HOH A . M 10 HOH 13 2013 2013 HOH HOH A . M 10 HOH 14 2014 2014 HOH HOH A . M 10 HOH 15 2015 2015 HOH HOH A . M 10 HOH 16 2016 2016 HOH HOH A . M 10 HOH 17 2017 2017 HOH HOH A . M 10 HOH 18 2018 2018 HOH HOH A . M 10 HOH 19 2019 2019 HOH HOH A . M 10 HOH 20 2020 2020 HOH HOH A . M 10 HOH 21 2021 2021 HOH HOH A . M 10 HOH 22 2022 2022 HOH HOH A . M 10 HOH 23 2023 2023 HOH HOH A . M 10 HOH 24 2024 2024 HOH HOH A . M 10 HOH 25 2025 2025 HOH HOH A . M 10 HOH 26 2026 2026 HOH HOH A . M 10 HOH 27 2027 2027 HOH HOH A . M 10 HOH 28 2028 2028 HOH HOH A . M 10 HOH 29 2029 2029 HOH HOH A . M 10 HOH 30 2030 2030 HOH HOH A . M 10 HOH 31 2031 2031 HOH HOH A . M 10 HOH 32 2032 2032 HOH HOH A . M 10 HOH 33 2033 2033 HOH HOH A . M 10 HOH 34 2034 2034 HOH HOH A . M 10 HOH 35 2035 2035 HOH HOH A . M 10 HOH 36 2036 2036 HOH HOH A . M 10 HOH 37 2037 2037 HOH HOH A . M 10 HOH 38 2038 2038 HOH HOH A . M 10 HOH 39 2039 2039 HOH HOH A . M 10 HOH 40 2040 2040 HOH HOH A . M 10 HOH 41 2041 2041 HOH HOH A . M 10 HOH 42 2042 2042 HOH HOH A . M 10 HOH 43 2043 2043 HOH HOH A . M 10 HOH 44 2044 2044 HOH HOH A . M 10 HOH 45 2045 2045 HOH HOH A . M 10 HOH 46 2046 2046 HOH HOH A . M 10 HOH 47 2047 2047 HOH HOH A . M 10 HOH 48 2048 2048 HOH HOH A . M 10 HOH 49 2049 2049 HOH HOH A . M 10 HOH 50 2050 2050 HOH HOH A . M 10 HOH 51 2051 2051 HOH HOH A . M 10 HOH 52 2052 2052 HOH HOH A . M 10 HOH 53 2053 2053 HOH HOH A . M 10 HOH 54 2054 2054 HOH HOH A . M 10 HOH 55 2055 2055 HOH HOH A . M 10 HOH 56 2056 2056 HOH HOH A . M 10 HOH 57 2057 2057 HOH HOH A . M 10 HOH 58 2058 2058 HOH HOH A . M 10 HOH 59 2059 2059 HOH HOH A . M 10 HOH 60 2060 2060 HOH HOH A . M 10 HOH 61 2061 2061 HOH HOH A . M 10 HOH 62 2062 2062 HOH HOH A . M 10 HOH 63 2063 2063 HOH HOH A . M 10 HOH 64 2064 2064 HOH HOH A . M 10 HOH 65 2065 2065 HOH HOH A . M 10 HOH 66 2066 2066 HOH HOH A . M 10 HOH 67 2067 2067 HOH HOH A . M 10 HOH 68 2068 2068 HOH HOH A . M 10 HOH 69 2069 2069 HOH HOH A . M 10 HOH 70 2070 2070 HOH HOH A . M 10 HOH 71 2071 2071 HOH HOH A . M 10 HOH 72 2072 2072 HOH HOH A . M 10 HOH 73 2073 2073 HOH HOH A . M 10 HOH 74 2074 2074 HOH HOH A . M 10 HOH 75 2075 2075 HOH HOH A . M 10 HOH 76 2076 2076 HOH HOH A . M 10 HOH 77 2077 2077 HOH HOH A . M 10 HOH 78 2078 2078 HOH HOH A . M 10 HOH 79 2079 2079 HOH HOH A . M 10 HOH 80 2080 2080 HOH HOH A . M 10 HOH 81 2081 2081 HOH HOH A . M 10 HOH 82 2082 2082 HOH HOH A . M 10 HOH 83 2083 2083 HOH HOH A . M 10 HOH 84 2084 2084 HOH HOH A . M 10 HOH 85 2085 2085 HOH HOH A . M 10 HOH 86 2086 2086 HOH HOH A . M 10 HOH 87 2087 2087 HOH HOH A . M 10 HOH 88 2088 2088 HOH HOH A . M 10 HOH 89 2089 2089 HOH HOH A . M 10 HOH 90 2090 2090 HOH HOH A . M 10 HOH 91 2091 2091 HOH HOH A . M 10 HOH 92 2092 2092 HOH HOH A . M 10 HOH 93 2093 2093 HOH HOH A . M 10 HOH 94 2094 2094 HOH HOH A . M 10 HOH 95 2095 2095 HOH HOH A . M 10 HOH 96 2096 2096 HOH HOH A . N 10 HOH 1 2001 2001 HOH HOH B . N 10 HOH 2 2002 2002 HOH HOH B . N 10 HOH 3 2003 2003 HOH HOH B . N 10 HOH 4 2004 2004 HOH HOH B . N 10 HOH 5 2005 2005 HOH HOH B . N 10 HOH 6 2006 2006 HOH HOH B . N 10 HOH 7 2007 2007 HOH HOH B . N 10 HOH 8 2008 2008 HOH HOH B . N 10 HOH 9 2009 2009 HOH HOH B . N 10 HOH 10 2010 2010 HOH HOH B . N 10 HOH 11 2011 2011 HOH HOH B . N 10 HOH 12 2012 2012 HOH HOH B . N 10 HOH 13 2013 2013 HOH HOH B . N 10 HOH 14 2014 2014 HOH HOH B . N 10 HOH 15 2015 2015 HOH HOH B . N 10 HOH 16 2016 2016 HOH HOH B . N 10 HOH 17 2017 2017 HOH HOH B . N 10 HOH 18 2018 2018 HOH HOH B . N 10 HOH 19 2019 2019 HOH HOH B . N 10 HOH 20 2020 2020 HOH HOH B . N 10 HOH 21 2021 2021 HOH HOH B . N 10 HOH 22 2022 2022 HOH HOH B . N 10 HOH 23 2023 2023 HOH HOH B . N 10 HOH 24 2024 2024 HOH HOH B . N 10 HOH 25 2025 2025 HOH HOH B . N 10 HOH 26 2026 2026 HOH HOH B . N 10 HOH 27 2027 2027 HOH HOH B . N 10 HOH 28 2028 2028 HOH HOH B . N 10 HOH 29 2029 2029 HOH HOH B . N 10 HOH 30 2030 2030 HOH HOH B . N 10 HOH 31 2031 2031 HOH HOH B . N 10 HOH 32 2032 2032 HOH HOH B . N 10 HOH 33 2033 2033 HOH HOH B . N 10 HOH 34 2034 2034 HOH HOH B . N 10 HOH 35 2035 2035 HOH HOH B . N 10 HOH 36 2036 2036 HOH HOH B . N 10 HOH 37 2037 2037 HOH HOH B . N 10 HOH 38 2038 2038 HOH HOH B . N 10 HOH 39 2039 2039 HOH HOH B . N 10 HOH 40 2040 2040 HOH HOH B . N 10 HOH 41 2041 2041 HOH HOH B . N 10 HOH 42 2042 2042 HOH HOH B . N 10 HOH 43 2043 2043 HOH HOH B . N 10 HOH 44 2044 2044 HOH HOH B . N 10 HOH 45 2045 2045 HOH HOH B . N 10 HOH 46 2046 2046 HOH HOH B . N 10 HOH 47 2047 2047 HOH HOH B . N 10 HOH 48 2048 2048 HOH HOH B . N 10 HOH 49 2049 2049 HOH HOH B . N 10 HOH 50 2050 2050 HOH HOH B . N 10 HOH 51 2051 2051 HOH HOH B . N 10 HOH 52 2052 2052 HOH HOH B . N 10 HOH 53 2053 2053 HOH HOH B . N 10 HOH 54 2054 2054 HOH HOH B . N 10 HOH 55 2055 2055 HOH HOH B . N 10 HOH 56 2056 2056 HOH HOH B . N 10 HOH 57 2057 2057 HOH HOH B . N 10 HOH 58 2058 2058 HOH HOH B . N 10 HOH 59 2059 2059 HOH HOH B . N 10 HOH 60 2060 2060 HOH HOH B . N 10 HOH 61 2061 2061 HOH HOH B . N 10 HOH 62 2062 2062 HOH HOH B . N 10 HOH 63 2063 2063 HOH HOH B . N 10 HOH 64 2064 2064 HOH HOH B . N 10 HOH 65 2065 2065 HOH HOH B . N 10 HOH 66 2066 2066 HOH HOH B . N 10 HOH 67 2067 2067 HOH HOH B . N 10 HOH 68 2068 2068 HOH HOH B . N 10 HOH 69 2069 2069 HOH HOH B . N 10 HOH 70 2070 2070 HOH HOH B . N 10 HOH 71 2071 2071 HOH HOH B . N 10 HOH 72 2072 2072 HOH HOH B . N 10 HOH 73 2073 2073 HOH HOH B . N 10 HOH 74 2074 2074 HOH HOH B . N 10 HOH 75 2075 2075 HOH HOH B . N 10 HOH 76 2076 2076 HOH HOH B . N 10 HOH 77 2077 2077 HOH HOH B . O 10 HOH 1 2001 2001 HOH HOH C . O 10 HOH 2 2002 2002 HOH HOH C . O 10 HOH 3 2003 2003 HOH HOH C . O 10 HOH 4 2004 2004 HOH HOH C . O 10 HOH 5 2005 2005 HOH HOH C . O 10 HOH 6 2006 2006 HOH HOH C . O 10 HOH 7 2007 2007 HOH HOH C . O 10 HOH 8 2008 2008 HOH HOH C . O 10 HOH 9 2009 2009 HOH HOH C . O 10 HOH 10 2010 2010 HOH HOH C . O 10 HOH 11 2011 2011 HOH HOH C . O 10 HOH 12 2012 2012 HOH HOH C . O 10 HOH 13 2013 2013 HOH HOH C . O 10 HOH 14 2014 2014 HOH HOH C . O 10 HOH 15 2015 2015 HOH HOH C . O 10 HOH 16 2016 2016 HOH HOH C . O 10 HOH 17 2017 2017 HOH HOH C . O 10 HOH 18 2018 2018 HOH HOH C . O 10 HOH 19 2019 2019 HOH HOH C . O 10 HOH 20 2020 2020 HOH HOH C . O 10 HOH 21 2021 2021 HOH HOH C . O 10 HOH 22 2022 2022 HOH HOH C . O 10 HOH 23 2023 2023 HOH HOH C . O 10 HOH 24 2024 2024 HOH HOH C . O 10 HOH 25 2025 2025 HOH HOH C . O 10 HOH 26 2026 2026 HOH HOH C . O 10 HOH 27 2027 2027 HOH HOH C . O 10 HOH 28 2028 2028 HOH HOH C . O 10 HOH 29 2029 2029 HOH HOH C . O 10 HOH 30 2030 2030 HOH HOH C . O 10 HOH 31 2031 2031 HOH HOH C . O 10 HOH 32 2032 2032 HOH HOH C . O 10 HOH 33 2033 2033 HOH HOH C . O 10 HOH 34 2034 2034 HOH HOH C . O 10 HOH 35 2035 2035 HOH HOH C . O 10 HOH 36 2036 2036 HOH HOH C . O 10 HOH 37 2037 2037 HOH HOH C . O 10 HOH 38 2038 2038 HOH HOH C . O 10 HOH 39 2039 2039 HOH HOH C . O 10 HOH 40 2040 2040 HOH HOH C . O 10 HOH 41 2041 2041 HOH HOH C . O 10 HOH 42 2042 2042 HOH HOH C . O 10 HOH 43 2043 2043 HOH HOH C . O 10 HOH 44 2044 2044 HOH HOH C . O 10 HOH 45 2045 2045 HOH HOH C . O 10 HOH 46 2046 2046 HOH HOH C . O 10 HOH 47 2047 2047 HOH HOH C . O 10 HOH 48 2048 2048 HOH HOH C . O 10 HOH 49 2049 2049 HOH HOH C . O 10 HOH 50 2050 2050 HOH HOH C . O 10 HOH 51 2051 2051 HOH HOH C . O 10 HOH 52 2052 2052 HOH HOH C . O 10 HOH 53 2053 2053 HOH HOH C . O 10 HOH 54 2054 2054 HOH HOH C . O 10 HOH 55 2055 2055 HOH HOH C . O 10 HOH 56 2056 2056 HOH HOH C . O 10 HOH 57 2057 2057 HOH HOH C . O 10 HOH 58 2058 2058 HOH HOH C . O 10 HOH 59 2059 2059 HOH HOH C . O 10 HOH 60 2060 2060 HOH HOH C . O 10 HOH 61 2061 2061 HOH HOH C . O 10 HOH 62 2062 2062 HOH HOH C . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 25 A MSE 516 ? MET SELENOMETHIONINE 2 A MSE 75 A MSE 566 ? MET SELENOMETHIONINE 3 B MSE 25 B MSE 516 ? MET SELENOMETHIONINE 4 B MSE 75 B MSE 566 ? MET SELENOMETHIONINE 5 C MSE 25 C MSE 516 ? MET SELENOMETHIONINE 6 C MSE 75 C MSE 566 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 3 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,D,E,F,M 2 1 B,G,H,I,N 3 1 C,J,K,L,O # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 2040 ? M HOH . 2 1 A HOH 2057 ? M HOH . 3 1 B HOH 2004 ? N HOH . 4 1 B HOH 2045 ? N HOH . 5 1 C HOH 2004 ? O HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-01-20 2 'Structure model' 1 1 2016-06-29 3 'Structure model' 1 2 2016-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 37.2290 -23.8330 -7.5560 0.0157 0.0098 0.1962 0.0104 -0.0104 0.0081 0.8104 0.5559 1.5959 -0.1735 0.7094 0.4215 0.0969 0.0677 0.0354 -0.0570 -0.0578 -0.0213 0.0382 0.0216 -0.0392 'X-RAY DIFFRACTION' 2 ? refined 8.4480 -37.4260 -24.9890 0.0175 0.0339 0.1230 -0.0141 -0.0172 -0.0185 1.5540 0.9482 1.0716 0.1584 -0.6648 0.2775 -0.1449 0.0980 0.0284 -0.0489 0.1547 -0.0401 0.0268 0.0590 -0.0098 'X-RAY DIFFRACTION' 3 ? refined 25.2210 -8.3400 -38.0820 0.0731 0.0272 0.1615 0.0139 0.0350 0.0283 1.0189 2.1431 1.1203 -1.0734 -0.2181 -0.6769 0.0878 0.0352 0.0734 -0.3186 -0.0620 -0.1583 0.1444 -0.0630 -0.0258 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 494 ? ? A 625 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 494 ? ? B 624 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 C 494 ? ? C 624 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PARROT 'model building' . ? 1 Aimless 'data scaling' . ? 2 SHELX phasing . ? 3 CCP4 phasing SUITES ? 4 PHASER phasing SAD ? 5 PARROT phasing . ? 6 REFMAC refinement 5.8.0073 ? 7 # _pdbx_entry_details.entry_id 4D3L _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ;NONAETHYLENE GLYCOL (2PE): ARTEFACT FROM EXPRESSION, PURIFICATION OR CRYSTALLISATION. BASED PURELY ON ELECTRON DENSITY. DI(HYDROXYETHYL)ETHER (PEG): ARTEFACT FROM EXPRESSION, PURIFICATION OR CRYSTALLISATION. BASED PURELY ON ELECTRON DENSITY. TETRAETHYLENE GLYCOL (PG4): ARTEFACT FROM EXPRESSION, PURIFICATION OR CRYSTALLISATION. BASED PURELY ON ELECTRON DENSITY. HEXAETHYLENE GLYCOL (P6G): ARTEFACT FROM EXPRESSION, PURIFICATION OR CRYSTALLISATION. BASED PURELY ON ELECTRON DENSITY. CALCIUM ION (CA): POSSIBLY FROM STORAGE BUFFER. 3-HYDROXY-HEXANEDIOIC ACID (HHD): ARTEFACT FROM EXPRESSION, PURIFICATION OR CRYSTALLISATION. BASED PURELY ON ELECTRON DENSITY AT THE 3-FOLD NCS. DERIVED FROM ARGININE RESIDUE WHICH WAS ONE OF THE BEST FITS OBTAINED BY RUNNING LIGAND_IDENTIFIER IN PHENIX. DOES NOT CORRESPOND TO THE ELECTRON DENSITY IN WWPDB ENTRIES 4V1K OR 4V1L. GLYCEROL (GOL): FROM THE CRYOPROTECTANT. 1,2-ETHANEDIOL (EDO): ARTEFACT FROM EXPRESSION, PURIFICATION OR CRYSTALLISATION. BASED PURELY ON ELECTRON DENSITY. ; _pdbx_entry_details.sequence_details 'SELENOMETHIONINE DERIVATIVE' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O C HOH 2002 ? ? O C HOH 2060 ? ? 1.75 2 1 O A HOH 2051 ? ? O A HOH 2071 ? ? 1.89 3 1 O A HOH 2092 ? ? O A HOH 2093 ? ? 2.10 4 1 O A HOH 2022 ? ? O A HOH 2023 ? ? 2.14 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 2085 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 2085 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 7_555 _pdbx_validate_symm_contact.dist 1.76 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id SER _pdbx_validate_torsion.auth_asym_id C _pdbx_validate_torsion.auth_seq_id 529 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 104.91 _pdbx_validate_torsion.psi -23.42 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 2039 ? 6.03 . 2 1 O ? A HOH 2040 ? 6.97 . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A SER 494 ? CB ? A SER 3 CB 2 1 Y 1 A SER 494 ? OG ? A SER 3 OG 3 1 Y 1 B SER 494 ? CB ? B SER 3 CB 4 1 Y 1 B SER 494 ? OG ? B SER 3 OG 5 1 N 1 A 2PE 1626 ? C11 ? D 2PE 1 C11 6 1 N 1 A 2PE 1626 ? C12 ? D 2PE 1 C12 7 1 N 1 A 2PE 1626 ? O13 ? D 2PE 1 O13 8 1 N 1 A 2PE 1626 ? C14 ? D 2PE 1 C14 9 1 N 1 A 2PE 1626 ? C15 ? D 2PE 1 C15 10 1 N 1 A 2PE 1626 ? O16 ? D 2PE 1 O16 11 1 N 1 A 2PE 1626 ? C17 ? D 2PE 1 C17 12 1 N 1 A 2PE 1626 ? C18 ? D 2PE 1 C18 13 1 N 1 A 2PE 1626 ? O19 ? D 2PE 1 O19 14 1 N 1 A 2PE 1626 ? C20 ? D 2PE 1 C20 15 1 N 1 A 2PE 1626 ? C21 ? D 2PE 1 C21 16 1 N 1 A 2PE 1626 ? O22 ? D 2PE 1 O22 17 1 N 1 A 2PE 1626 ? C23 ? D 2PE 1 C23 18 1 N 1 A 2PE 1626 ? C24 ? D 2PE 1 C24 19 1 N 1 A 2PE 1626 ? O25 ? D 2PE 1 O25 20 1 N 1 A 2PE 1626 ? C26 ? D 2PE 1 C26 21 1 N 1 A 2PE 1626 ? C27 ? D 2PE 1 C27 22 1 N 1 A 2PE 1626 ? O28 ? D 2PE 1 O28 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 492 ? A MSE 1 2 1 Y 1 A ALA 493 ? A ALA 2 3 1 Y 1 A HIS 626 ? A HIS 135 4 1 Y 1 A HIS 627 ? A HIS 136 5 1 Y 1 A HIS 628 ? A HIS 137 6 1 Y 1 A HIS 629 ? A HIS 138 7 1 Y 1 B MSE 492 ? B MSE 1 8 1 Y 1 B ALA 493 ? B ALA 2 9 1 Y 1 B HIS 625 ? B HIS 134 10 1 Y 1 B HIS 626 ? B HIS 135 11 1 Y 1 B HIS 627 ? B HIS 136 12 1 Y 1 B HIS 628 ? B HIS 137 13 1 Y 1 B HIS 629 ? B HIS 138 14 1 Y 1 C MSE 492 ? C MSE 1 15 1 Y 1 C ALA 493 ? C ALA 2 16 1 Y 1 C HIS 625 ? C HIS 134 17 1 Y 1 C HIS 626 ? C HIS 135 18 1 Y 1 C HIS 627 ? C HIS 136 19 1 Y 1 C HIS 628 ? C HIS 137 20 1 Y 1 C HIS 629 ? C HIS 138 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'NONAETHYLENE GLYCOL' 2PE 3 'HEXAETHYLENE GLYCOL' P6G 4 1,2-ETHANEDIOL EDO 5 GLYCEROL GOL 6 'DI(HYDROXYETHYL)ETHER' PEG 7 'CALCIUM ION' CA 8 'TETRAETHYLENE GLYCOL' PG4 9 '(3S)-3-HYDROXYHEPTANEDIOIC ACID' HHD 10 water HOH #