HEADER OXIDOREDUCTASE 23-OCT-14 4D3U TITLE STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE H128S IN COMPLEX TITLE 2 WITH N-{3-[(1S)-2-(3-{(Z)-[AMINO(THIOPHEN-2-YL) TITLE 3 METHYLIDENE]AMINO}PHENOXY)-1-HYDROXYETHYL]PHENYL}THIOPHENE-2- TITLE 4 CARBOXIMIDAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NITRIC OXIDE SYNTHASE OXYGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NOSOXY-LIKE PROTEIN; COMPND 5 EC: 1.14.13.165; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 ATCC: 23857; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS OXIDOREDUCTASE, INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR J.K.HOLDEN,T.L.POULOS REVDAT 5 20-DEC-23 4D3U 1 REMARK REVDAT 4 06-FEB-19 4D3U 1 REMARK REVDAT 3 30-JAN-19 4D3U 1 REMARK REVDAT 2 04-FEB-15 4D3U 1 JRNL REVDAT 1 14-JAN-15 4D3U 0 JRNL AUTH J.K.HOLDEN,S.KANG,S.A.HOLLINGSWORTH,H.LI,N.LIM,S.CHEN, JRNL AUTH 2 H.HUANG,F.XUE,W.TANG,R.B.SILVERMAN,T.L.POULOS JRNL TITL STRUCTURE-BASED DESIGN OF BACTERIAL NITRIC OXIDE SYNTHASE JRNL TITL 2 INHIBITORS. JRNL REF J.MED.CHEM. V. 58 994 2015 JRNL REFN ISSN 0022-2623 JRNL PMID 25522110 JRNL DOI 10.1021/JM501723P REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 77.3 REMARK 3 NUMBER OF REFLECTIONS : 26173 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1341 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.4201 - 4.2640 0.98 3330 183 0.1348 0.1661 REMARK 3 2 4.2640 - 3.3860 0.99 3208 169 0.1430 0.1860 REMARK 3 3 3.3860 - 2.9585 0.99 3236 154 0.1793 0.2256 REMARK 3 4 2.9585 - 2.6882 0.99 3166 167 0.1948 0.2810 REMARK 3 5 2.6882 - 2.4956 0.99 3158 157 0.2138 0.2495 REMARK 3 6 2.4956 - 2.3485 0.85 2695 176 0.2099 0.2356 REMARK 3 7 2.3485 - 2.2310 0.70 2199 142 0.2175 0.2488 REMARK 3 8 2.2310 - 2.1339 0.57 1791 89 0.2080 0.2589 REMARK 3 9 2.1339 - 2.0518 0.42 1339 64 0.2162 0.2870 REMARK 3 10 2.0518 - 1.9810 0.22 710 40 0.2024 0.2432 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.44 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3116 REMARK 3 ANGLE : 1.324 4228 REMARK 3 CHIRALITY : 0.073 434 REMARK 3 PLANARITY : 0.004 542 REMARK 3 DIHEDRAL : 14.457 1155 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 5.5875 19.6463 22.3769 REMARK 3 T TENSOR REMARK 3 T11: 0.2625 T22: 0.2344 REMARK 3 T33: 0.2642 T12: -0.0393 REMARK 3 T13: 0.0239 T23: -0.0426 REMARK 3 L TENSOR REMARK 3 L11: 1.3839 L22: 2.1438 REMARK 3 L33: 1.3200 L12: 0.2523 REMARK 3 L13: 0.2130 L23: -0.3838 REMARK 3 S TENSOR REMARK 3 S11: -0.1130 S12: 0.1898 S13: 0.1504 REMARK 3 S21: -0.3313 S22: 0.1425 S23: -0.0598 REMARK 3 S31: -0.1676 S32: 0.1042 S33: -0.0227 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4D3U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1290062101. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97891 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33624 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 37.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 1.30000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 4LWA REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 60 MM BIS-TRIS METHANE, 40 MM CITRIC REMARK 280 ACID, 20% PEG3350, 1.9% 1-PROPANOL, PH 7.6, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 40.46500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.36500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.46500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.36500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 117 -80.21 -89.73 REMARK 500 LYS A 118 34.84 -98.69 REMARK 500 ARG A 164 36.20 70.17 REMARK 500 ALA A 233 65.60 -163.89 REMARK 500 ARG A 247 -66.83 -129.32 REMARK 500 ARG A 254 -125.49 -114.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 (S)-N-(3-(1-HYDROXY-2-(3-(THIOPHENE-2-CARBOXIMIDAMIDO)PHENOXY)ETHYL) REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 901 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 66 SG REMARK 620 2 HEM A 901 NA 98.3 REMARK 620 3 HEM A 901 NB 93.3 86.6 REMARK 620 4 HEM A 901 NC 92.5 168.2 88.2 REMARK 620 5 HEM A 901 ND 101.1 91.2 165.6 91.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POL A 906 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POL A 907 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POL A 909 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 908 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RFQ A 904 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4D3I RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 6,6'-((5-(AMINOMETHYL)-1,3-PHENYLENE) BIS(ETHANE-2,1-DIYL)) REMARK 900 BIS(4-METHYLPYRIDIN-2-AMINE) REMARK 900 RELATED ID: 4D3J RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 6,6'-(2,2'-(5-AMINO-1,3-PHENYLENE) BIS(ETHANE-2,1-DIYL))BIS(4- REMARK 900 METHYLPYRIDIN-2-AMINE) REMARK 900 RELATED ID: 4D3K RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 6,6'-((5-(3-AMINOPROPYL)-1,3- PHENYLENE)BIS(ETHANE-2,1-DIYL)) REMARK 900 BIS(4-METHYLPYRIDIN-2 -AMINE) REMARK 900 RELATED ID: 4D3M RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 3-(2-(6-AMINO-4-METHYLPYRIDIN-2-YL) ETHYL)-5-(2-(4-METHYL-6- REMARK 900 (METHYLAMINO)PYRIDIN-2-YL) ETHYL)BENZONITRILE REMARK 900 RELATED ID: 4D3N RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 3-(2-(6-AMINO-4-METHYLPYRIDIN-2-YL) ETHYL)-5-((2-(PYRIDIN-2-YL) REMARK 900 ETHYL)AMINO)BENZONITRILE REMARK 900 RELATED ID: 4D3O RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 6-(3-(2-(1H-PYRROLO(2,3-B)PYRIDIN- 6-YL)ETHYL)-5-(AMINOMETHYL) REMARK 900 PHENETHYL)-4-METHYLPYRIDIN- 2-AMINE REMARK 900 RELATED ID: 4D3T RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH (S)-N-(3-(1-HYDROXY-2-(3-(THIOPHENE- 2-CARBOXIMIDAMIDO)PHENOXY) REMARK 900 ETHYL)PHENYL)THIOPHENE-2- CARBOXIMIDAMIDE REMARK 900 RELATED ID: 4D3V RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE I218V IN REMARK 900 COMPLEX WITH (S)-N-(3-(1-HYDROXY-2-(3-( THIOPHENE-2-CARBOXIMIDAMIDO) REMARK 900 PHENOXY)ETHYL)PHENYL)THIOPHENE -2-CARBOXIMIDAMIDE REMARK 999 REMARK 999 SEQUENCE REMARK 999 E25A, E26A,E316A AND H128S INTRODUCED. N TERIMINAL GSH REMARK 999 RESIDUES ARE FROM THE CLEAVED HIS TAG DBREF 4D3U A 1 363 UNP O34453 NOSO_BACSU 1 363 SEQADV 4D3U GLY A -2 UNP O34453 EXPRESSION TAG SEQADV 4D3U SER A -1 UNP O34453 EXPRESSION TAG SEQADV 4D3U HIS A 0 UNP O34453 EXPRESSION TAG SEQADV 4D3U ALA A 25 UNP O34453 GLU 25 ENGINEERED MUTATION SEQADV 4D3U ALA A 26 UNP O34453 GLU 26 ENGINEERED MUTATION SEQADV 4D3U SER A 128 UNP O34453 HIS 128 ENGINEERED MUTATION SEQADV 4D3U ALA A 316 UNP O34453 GLU 316 ENGINEERED MUTATION SEQRES 1 A 366 GLY SER HIS MET GLU GLU LYS GLU ILE LEU TRP ASN GLU SEQRES 2 A 366 ALA LYS ALA PHE ILE ALA ALA CYS TYR GLN GLU LEU GLY SEQRES 3 A 366 LYS ALA ALA GLU VAL LYS ASP ARG LEU ALA ASP ILE LYS SEQRES 4 A 366 SER GLU ILE ASP LEU THR GLY SER TYR VAL HIS THR LYS SEQRES 5 A 366 GLU GLU LEU GLU HIS GLY ALA LYS MET ALA TRP ARG ASN SEQRES 6 A 366 SER ASN ARG CYS ILE GLY ARG LEU PHE TRP ASN SER LEU SEQRES 7 A 366 ASN VAL ILE ASP ARG ARG ASP VAL ARG THR LYS GLU GLU SEQRES 8 A 366 VAL ARG ASP ALA LEU PHE HIS HIS ILE GLU THR ALA THR SEQRES 9 A 366 ASN ASN GLY LYS ILE ARG PRO THR ILE THR ILE PHE PRO SEQRES 10 A 366 PRO GLU GLU LYS GLY GLU LYS GLN VAL GLU ILE TRP ASN SEQRES 11 A 366 SER GLN LEU ILE ARG TYR ALA GLY TYR GLU SER ASP GLY SEQRES 12 A 366 GLU ARG ILE GLY ASP PRO ALA SER CYS SER LEU THR ALA SEQRES 13 A 366 ALA CYS GLU GLU LEU GLY TRP ARG GLY GLU ARG THR ASP SEQRES 14 A 366 PHE ASP LEU LEU PRO LEU ILE PHE ARG MET LYS GLY ASP SEQRES 15 A 366 GLU GLN PRO VAL TRP TYR GLU LEU PRO ARG SER LEU VAL SEQRES 16 A 366 ILE GLU VAL PRO ILE THR HIS PRO ASP ILE GLU ALA PHE SEQRES 17 A 366 SER ASP LEU GLU LEU LYS TRP TYR GLY VAL PRO ILE ILE SEQRES 18 A 366 SER ASP MET LYS LEU GLU VAL GLY GLY ILE HIS TYR ASN SEQRES 19 A 366 ALA ALA PRO PHE ASN GLY TRP TYR MET GLY THR GLU ILE SEQRES 20 A 366 GLY ALA ARG ASN LEU ALA ASP GLU LYS ARG TYR ASP LYS SEQRES 21 A 366 LEU LYS LYS VAL ALA SER VAL ILE GLY ILE ALA ALA ASP SEQRES 22 A 366 TYR ASN THR ASP LEU TRP LYS ASP GLN ALA LEU VAL GLU SEQRES 23 A 366 LEU ASN LYS ALA VAL LEU HIS SER TYR LYS LYS GLN GLY SEQRES 24 A 366 VAL SER ILE VAL ASP HIS HIS THR ALA ALA SER GLN PHE SEQRES 25 A 366 LYS ARG PHE GLU GLU GLN ALA GLU GLU ALA GLY ARG LYS SEQRES 26 A 366 LEU THR GLY ASP TRP THR TRP LEU ILE PRO PRO ILE SER SEQRES 27 A 366 PRO ALA ALA THR HIS ILE PHE HIS ARG SER TYR ASP ASN SEQRES 28 A 366 SER ILE VAL LYS PRO ASN TYR PHE TYR GLN ASP LYS PRO SEQRES 29 A 366 TYR GLU HET HEM A 901 43 HET CL A 903 1 HET RFQ A 904 32 HET GOL A 905 6 HET POL A 906 4 HET POL A 907 4 HET GOL A 908 6 HET POL A 909 4 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM CL CHLORIDE ION HETNAM RFQ N-{3-[(1S)-2-(3-{(Z)-[AMINO(THIOPHEN-2-YL) HETNAM 2 RFQ METHYLIDENE]AMINO}PHENOXY)-1- HETNAM 3 RFQ HYDROXYETHYL]PHENYL}THIOPHENE-2-CARBOXIMIDAMIDE HETNAM GOL GLYCEROL HETNAM POL N-PROPANOL HETSYN HEM HEME HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN POL 1-PROPONOL FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 CL CL 1- FORMUL 4 RFQ C24 H21 N4 O2 S2 FORMUL 5 GOL 2(C3 H8 O3) FORMUL 6 POL 3(C3 H8 O) FORMUL 10 HOH *169(H2 O) HELIX 1 1 GLU A 3 LEU A 22 1 20 HELIX 2 2 LYS A 24 ALA A 26 5 3 HELIX 3 3 GLU A 27 GLY A 43 1 17 HELIX 4 4 THR A 48 ASN A 62 1 15 HELIX 5 5 GLY A 68 LEU A 75 5 8 HELIX 6 6 THR A 85 ASN A 102 1 18 HELIX 7 7 ASN A 103 LYS A 105 5 3 HELIX 8 8 SER A 148 LEU A 158 1 11 HELIX 9 9 PRO A 188 VAL A 192 5 5 HELIX 10 10 ILE A 202 GLU A 209 5 8 HELIX 11 11 GLY A 241 ALA A 246 1 6 HELIX 12 12 LYS A 257 ILE A 265 1 9 HELIX 13 13 TYR A 271 ASP A 274 5 4 HELIX 14 14 LEU A 275 GLY A 296 1 22 HELIX 15 15 ASP A 301 ALA A 319 1 19 HELIX 16 16 ASP A 326 ILE A 331 1 6 HELIX 17 17 SER A 335 THR A 339 5 5 HELIX 18 18 HIS A 340 ARG A 344 5 5 SHEET 1 A 4 ASN A 76 ASP A 79 0 SHEET 2 A 4 THR A 109 ILE A 112 1 O ILE A 110 N ILE A 78 SHEET 3 A 4 PHE A 235 ASN A 236 -1 O ASN A 236 N THR A 109 SHEET 4 A 4 ILE A 217 ILE A 218 -1 N ILE A 218 O PHE A 235 SHEET 1 B 3 VAL A 123 ILE A 125 0 SHEET 2 B 3 LEU A 172 MET A 176 -1 O ARG A 175 N GLU A 124 SHEET 3 B 3 VAL A 183 TYR A 185 -1 O TYR A 185 N LEU A 172 SHEET 1 C 2 GLY A 135 SER A 138 0 SHEET 2 C 2 GLU A 141 GLY A 144 -1 O ILE A 143 N TYR A 136 SHEET 1 D 2 GLU A 194 PRO A 196 0 SHEET 2 D 2 LYS A 211 TYR A 213 -1 O TRP A 212 N VAL A 195 SHEET 1 E 3 ILE A 228 TYR A 230 0 SHEET 2 E 3 MET A 221 VAL A 225 -1 N LEU A 223 O TYR A 230 SHEET 3 E 3 ASN A 354 TYR A 357 -1 O PHE A 356 N LYS A 222 SHEET 1 F 2 TYR A 239 MET A 240 0 SHEET 2 F 2 ILE A 299 VAL A 300 1 O VAL A 300 N TYR A 239 LINK SG CYS A 66 FE HEM A 901 1555 1555 2.51 CISPEP 1 LYS A 352 PRO A 353 0 -1.96 SITE 1 AC1 2 GLY A 144 LYS A 257 SITE 1 AC2 5 TRP A 327 THR A 328 TRP A 329 SER A 345 SITE 2 AC2 5 RFQ A 904 SITE 1 AC3 7 GLU A 243 ARG A 247 ASN A 248 HEM A 901 SITE 2 AC3 7 CL A 903 RFQ A 904 HOH A2166 SITE 1 AC4 15 TRP A 60 SER A 63 ARG A 65 CYS A 66 SITE 2 AC4 15 PHE A 235 ASN A 236 TRP A 238 GLU A 243 SITE 3 AC4 15 TRP A 329 TYR A 355 TYR A 357 RFQ A 904 SITE 4 AC4 15 GOL A 908 POL A 909 HOH A2166 SITE 1 AC5 7 GLY A 159 TRP A 160 ARG A 161 SER A 298 SITE 2 AC5 7 ILE A 299 GLN A 308 HOH A2168 SITE 1 AC6 6 ILE A 350 TYR A 355 PHE A 356 TYR A 357 SITE 2 AC6 6 HEM A 901 HOH A2169 SITE 1 AC7 4 GLN A 129 TYR A 239 ASN A 248 POL A 909 SITE 1 AC8 15 PRO A 216 ILE A 218 PHE A 235 ASN A 236 SITE 2 AC8 15 GLY A 237 TRP A 238 GLU A 243 ARG A 247 SITE 3 AC8 15 THR A 328 TRP A 329 PHE A 342 HEM A 901 SITE 4 AC8 15 POL A 907 POL A 909 HOH A2043 CRYST1 80.930 94.730 62.030 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012356 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010556 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016121 0.00000