HEADER OXIDOREDUCTASE 23-OCT-14 4D3V TITLE STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE I218V IN COMPLEX TITLE 2 WITH N-{3-[(1S)-2-(3-{(Z)-[AMINO(THIOPHEN-2-YL) TITLE 3 METHYLIDENE]AMINO}PHENOXY)-1-HYDROXYETHYL]PHENYL}THIOPHENE-2- TITLE 4 CARBOXIMIDAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NITRIC OXIDE SYNTHASE OXYGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NOSOXY-LIKE PROTEIN; COMPND 5 EC: 1.14.13.165; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 ATCC: 23857; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS OXIDOREDUCTASE, INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR J.K.HOLDEN,T.L.POULOS REVDAT 5 20-DEC-23 4D3V 1 REMARK REVDAT 4 06-FEB-19 4D3V 1 REMARK REVDAT 3 30-JAN-19 4D3V 1 REMARK REVDAT 2 04-FEB-15 4D3V 1 JRNL REVDAT 1 14-JAN-15 4D3V 0 JRNL AUTH J.K.HOLDEN,S.KANG,S.A.HOLLINGSWORTH,H.LI,N.LIM,S.CHEN, JRNL AUTH 2 H.HUANG,F.XUE,W.TANG,R.B.SILVERMAN,T.L.POULOS JRNL TITL STRUCTURE-BASED DESIGN OF BACTERIAL NITRIC OXIDE SYNTHASE JRNL TITL 2 INHIBITORS. JRNL REF J.MED.CHEM. V. 58 994 2015 JRNL REFN ISSN 0022-2623 JRNL PMID 25522110 JRNL DOI 10.1021/JM501723P REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 39297 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2002 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.2144 - 4.5300 1.00 2863 162 0.1562 0.1835 REMARK 3 2 4.5300 - 3.5959 1.00 2743 146 0.1366 0.1680 REMARK 3 3 3.5959 - 3.1415 1.00 2702 139 0.1680 0.1921 REMARK 3 4 3.1415 - 2.8543 1.00 2696 130 0.1725 0.2189 REMARK 3 5 2.8543 - 2.6497 1.00 2672 124 0.1741 0.2411 REMARK 3 6 2.6497 - 2.4935 0.99 2650 141 0.1651 0.2038 REMARK 3 7 2.4935 - 2.3686 0.99 2614 166 0.1693 0.2131 REMARK 3 8 2.3686 - 2.2655 1.00 2641 160 0.1697 0.2235 REMARK 3 9 2.2655 - 2.1783 0.99 2607 150 0.1970 0.2459 REMARK 3 10 2.1783 - 2.1031 1.00 2661 122 0.2061 0.2260 REMARK 3 11 2.1031 - 2.0374 0.99 2642 134 0.2322 0.2874 REMARK 3 12 2.0374 - 1.9791 0.99 2621 136 0.2526 0.2872 REMARK 3 13 1.9791 - 1.9270 0.99 2608 144 0.2711 0.3032 REMARK 3 14 1.9270 - 1.8800 0.99 2575 148 0.3194 0.3543 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.870 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.05 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3125 REMARK 3 ANGLE : 1.301 4239 REMARK 3 CHIRALITY : 0.071 435 REMARK 3 PLANARITY : 0.004 543 REMARK 3 DIHEDRAL : 13.885 1157 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 5.4888 19.4941 22.6268 REMARK 3 T TENSOR REMARK 3 T11: 0.2543 T22: 0.2251 REMARK 3 T33: 0.3295 T12: -0.0179 REMARK 3 T13: 0.0255 T23: -0.0226 REMARK 3 L TENSOR REMARK 3 L11: 1.1778 L22: 1.6412 REMARK 3 L33: 1.0842 L12: -0.0008 REMARK 3 L13: 0.2226 L23: -0.4225 REMARK 3 S TENSOR REMARK 3 S11: -0.0418 S12: 0.1676 S13: 0.1457 REMARK 3 S21: -0.1648 S22: 0.0570 S23: -0.1009 REMARK 3 S31: -0.1362 S32: 0.1250 S33: -0.0072 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4D3V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1290062103. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999746 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39483 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 49.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.92000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 4LWA REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 60 MM BIS-TRIS METHANE, 40 MM CITRIC REMARK 280 ACID, 20% PEG3350, 1.9% 1-PROPANOL, PH 7.6, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 40.27500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.47150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.27500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.47150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2248 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 117 -70.61 -93.39 REMARK 500 ALA A 233 70.30 -157.89 REMARK 500 ARG A 247 -69.38 -130.51 REMARK 500 ARG A 254 -124.68 -117.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 901 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 66 SG REMARK 620 2 HEM A 901 NA 97.6 REMARK 620 3 HEM A 901 NB 94.6 86.1 REMARK 620 4 HEM A 901 NC 96.0 165.8 88.9 REMARK 620 5 HEM A 901 ND 100.6 89.6 164.6 91.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RFQ A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POL A 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POL A 906 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POL A 907 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 908 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 909 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 910 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4D3I RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 6,6'-((5-(AMINOMETHYL)-1,3-PHENYLENE) BIS(ETHANE-2,1-DIYL)) REMARK 900 BIS(4-METHYLPYRIDIN-2-AMINE) REMARK 900 RELATED ID: 4D3J RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 6,6'-(2,2'-(5-AMINO-1,3-PHENYLENE) BIS(ETHANE-2,1-DIYL))BIS(4- REMARK 900 METHYLPYRIDIN-2-AMINE) REMARK 900 RELATED ID: 4D3K RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 6,6'-((5-(3-AMINOPROPYL)-1,3- PHENYLENE)BIS(ETHANE-2,1-DIYL)) REMARK 900 BIS(4-METHYLPYRIDIN-2 -AMINE) REMARK 900 RELATED ID: 4D3M RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 3-(2-(6-AMINO-4-METHYLPYRIDIN-2-YL) ETHYL)-5-(2-(4-METHYL-6- REMARK 900 (METHYLAMINO)PYRIDIN-2-YL) ETHYL)BENZONITRILE REMARK 900 RELATED ID: 4D3N RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 3-(2-(6-AMINO-4-METHYLPYRIDIN-2-YL) ETHYL)-5-((2-(PYRIDIN-2-YL) REMARK 900 ETHYL)AMINO)BENZONITRILE REMARK 900 RELATED ID: 4D3O RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 6-(3-(2-(1H-PYRROLO(2,3-B)PYRIDIN- 6-YL)ETHYL)-5-(AMINOMETHYL) REMARK 900 PHENETHYL)-4-METHYLPYRIDIN- 2-AMINE REMARK 900 RELATED ID: 4D3T RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH (S)-N-(3-(1-HYDROXY-2-(3-(THIOPHENE- 2-CARBOXIMIDAMIDO)PHENOXY) REMARK 900 ETHYL)PHENYL)THIOPHENE-2- CARBOXIMIDAMIDE REMARK 900 RELATED ID: 4D3U RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE H128S IN REMARK 900 COMPLEX WITH (S)-N-(3-(1-HYDROXY-2-(3-( THIOPHENE-2-CARBOXIMIDAMIDO) REMARK 900 PHENOXY)ETHYL)PHENYL)THIOPHENE -2-CARBOXIMIDAMIDE REMARK 999 REMARK 999 SEQUENCE REMARK 999 E25A, E26A, E316A AND I218V INTRODUCED. N TERMINAL REMARK 999 RESIDUES GSH ARE CARRYOVER FROM THE CLEAVED HIS TAG. DBREF 4D3V A 1 363 UNP O34453 NOSO_BACSU 1 363 SEQADV 4D3V GLY A -2 UNP O34453 EXPRESSION TAG SEQADV 4D3V SER A -1 UNP O34453 EXPRESSION TAG SEQADV 4D3V HIS A 0 UNP O34453 EXPRESSION TAG SEQADV 4D3V ALA A 25 UNP O34453 GLU 25 ENGINEERED MUTATION SEQADV 4D3V ALA A 26 UNP O34453 GLU 26 ENGINEERED MUTATION SEQADV 4D3V VAL A 218 UNP O34453 ILE 218 ENGINEERED MUTATION SEQADV 4D3V ALA A 316 UNP O34453 GLU 316 ENGINEERED MUTATION SEQRES 1 A 366 GLY SER HIS MET GLU GLU LYS GLU ILE LEU TRP ASN GLU SEQRES 2 A 366 ALA LYS ALA PHE ILE ALA ALA CYS TYR GLN GLU LEU GLY SEQRES 3 A 366 LYS ALA ALA GLU VAL LYS ASP ARG LEU ALA ASP ILE LYS SEQRES 4 A 366 SER GLU ILE ASP LEU THR GLY SER TYR VAL HIS THR LYS SEQRES 5 A 366 GLU GLU LEU GLU HIS GLY ALA LYS MET ALA TRP ARG ASN SEQRES 6 A 366 SER ASN ARG CYS ILE GLY ARG LEU PHE TRP ASN SER LEU SEQRES 7 A 366 ASN VAL ILE ASP ARG ARG ASP VAL ARG THR LYS GLU GLU SEQRES 8 A 366 VAL ARG ASP ALA LEU PHE HIS HIS ILE GLU THR ALA THR SEQRES 9 A 366 ASN ASN GLY LYS ILE ARG PRO THR ILE THR ILE PHE PRO SEQRES 10 A 366 PRO GLU GLU LYS GLY GLU LYS GLN VAL GLU ILE TRP ASN SEQRES 11 A 366 HIS GLN LEU ILE ARG TYR ALA GLY TYR GLU SER ASP GLY SEQRES 12 A 366 GLU ARG ILE GLY ASP PRO ALA SER CYS SER LEU THR ALA SEQRES 13 A 366 ALA CYS GLU GLU LEU GLY TRP ARG GLY GLU ARG THR ASP SEQRES 14 A 366 PHE ASP LEU LEU PRO LEU ILE PHE ARG MET LYS GLY ASP SEQRES 15 A 366 GLU GLN PRO VAL TRP TYR GLU LEU PRO ARG SER LEU VAL SEQRES 16 A 366 ILE GLU VAL PRO ILE THR HIS PRO ASP ILE GLU ALA PHE SEQRES 17 A 366 SER ASP LEU GLU LEU LYS TRP TYR GLY VAL PRO ILE VAL SEQRES 18 A 366 SER ASP MET LYS LEU GLU VAL GLY GLY ILE HIS TYR ASN SEQRES 19 A 366 ALA ALA PRO PHE ASN GLY TRP TYR MET GLY THR GLU ILE SEQRES 20 A 366 GLY ALA ARG ASN LEU ALA ASP GLU LYS ARG TYR ASP LYS SEQRES 21 A 366 LEU LYS LYS VAL ALA SER VAL ILE GLY ILE ALA ALA ASP SEQRES 22 A 366 TYR ASN THR ASP LEU TRP LYS ASP GLN ALA LEU VAL GLU SEQRES 23 A 366 LEU ASN LYS ALA VAL LEU HIS SER TYR LYS LYS GLN GLY SEQRES 24 A 366 VAL SER ILE VAL ASP HIS HIS THR ALA ALA SER GLN PHE SEQRES 25 A 366 LYS ARG PHE GLU GLU GLN ALA GLU GLU ALA GLY ARG LYS SEQRES 26 A 366 LEU THR GLY ASP TRP THR TRP LEU ILE PRO PRO ILE SER SEQRES 27 A 366 PRO ALA ALA THR HIS ILE PHE HIS ARG SER TYR ASP ASN SEQRES 28 A 366 SER ILE VAL LYS PRO ASN TYR PHE TYR GLN ASP LYS PRO SEQRES 29 A 366 TYR GLU HET HEM A 901 43 HET CL A 902 1 HET RFQ A 904 32 HET POL A 905 4 HET POL A 906 4 HET POL A 907 4 HET GOL A 908 6 HET GOL A 909 6 HET GOL A 910 6 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM CL CHLORIDE ION HETNAM RFQ N-{3-[(1S)-2-(3-{(Z)-[AMINO(THIOPHEN-2-YL) HETNAM 2 RFQ METHYLIDENE]AMINO}PHENOXY)-1- HETNAM 3 RFQ HYDROXYETHYL]PHENYL}THIOPHENE-2-CARBOXIMIDAMIDE HETNAM POL N-PROPANOL HETNAM GOL GLYCEROL HETSYN HEM HEME HETSYN POL 1-PROPONOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 CL CL 1- FORMUL 4 RFQ C24 H21 N4 O2 S2 FORMUL 5 POL 3(C3 H8 O) FORMUL 8 GOL 3(C3 H8 O3) FORMUL 11 HOH *272(H2 O) HELIX 1 1 GLU A 2 LEU A 22 1 21 HELIX 2 2 LYS A 24 ALA A 26 5 3 HELIX 3 3 GLU A 27 GLY A 43 1 17 HELIX 4 4 THR A 48 ASN A 62 1 15 HELIX 5 5 GLY A 68 LEU A 75 5 8 HELIX 6 6 THR A 85 ASN A 102 1 18 HELIX 7 7 ASN A 103 LYS A 105 5 3 HELIX 8 8 SER A 148 LEU A 158 1 11 HELIX 9 9 PRO A 188 VAL A 192 5 5 HELIX 10 10 ILE A 202 GLU A 209 5 8 HELIX 11 11 GLY A 241 ALA A 246 1 6 HELIX 12 12 LYS A 257 ILE A 265 1 9 HELIX 13 13 TYR A 271 ASP A 274 5 4 HELIX 14 14 LEU A 275 GLY A 296 1 22 HELIX 15 15 ASP A 301 ALA A 319 1 19 HELIX 16 16 ASP A 326 ILE A 331 1 6 HELIX 17 17 SER A 335 THR A 339 5 5 HELIX 18 18 HIS A 340 ARG A 344 5 5 SHEET 1 AA 4 ASN A 76 ASP A 79 0 SHEET 2 AA 4 THR A 109 ILE A 112 1 O ILE A 110 N ILE A 78 SHEET 3 AA 4 PHE A 235 ASN A 236 -1 O ASN A 236 N THR A 109 SHEET 4 AA 4 ILE A 217 VAL A 218 -1 O VAL A 218 N PHE A 235 SHEET 1 AB 3 VAL A 123 ILE A 125 0 SHEET 2 AB 3 LEU A 172 MET A 176 -1 O ARG A 175 N GLU A 124 SHEET 3 AB 3 VAL A 183 TYR A 185 -1 O VAL A 183 N PHE A 174 SHEET 1 AC 2 GLY A 135 SER A 138 0 SHEET 2 AC 2 GLU A 141 GLY A 144 -1 O GLU A 141 N SER A 138 SHEET 1 AD 2 GLU A 194 PRO A 196 0 SHEET 2 AD 2 LYS A 211 TYR A 213 -1 O TRP A 212 N VAL A 195 SHEET 1 AE 3 ILE A 228 TYR A 230 0 SHEET 2 AE 3 LYS A 222 VAL A 225 -1 O LEU A 223 N TYR A 230 SHEET 3 AE 3 ASN A 354 PHE A 356 -1 O ASN A 354 N GLU A 224 SHEET 1 AF 2 TYR A 239 MET A 240 0 SHEET 2 AF 2 ILE A 299 VAL A 300 1 N VAL A 300 O TYR A 239 LINK SG CYS A 66 FE HEM A 901 1555 1555 2.53 CISPEP 1 LYS A 352 PRO A 353 0 -0.45 SITE 1 AC1 17 TRP A 60 SER A 63 ARG A 65 CYS A 66 SITE 2 AC1 17 PHE A 235 ASN A 236 TRP A 238 GLU A 243 SITE 3 AC1 17 TRP A 329 TYR A 355 TYR A 357 RFQ A 904 SITE 4 AC1 17 POL A 906 GOL A 908 HOH A2164 HOH A2247 SITE 5 AC1 17 HOH A2269 SITE 1 AC2 4 GLN A 129 TYR A 239 ASN A 248 POL A 906 SITE 1 AC3 16 HIS A 128 PRO A 216 VAL A 218 PHE A 235 SITE 2 AC3 16 ASN A 236 GLY A 237 TRP A 238 GLU A 243 SITE 3 AC3 16 ARG A 247 THR A 328 TRP A 329 PHE A 342 SITE 4 AC3 16 HEM A 901 POL A 906 GOL A 909 HOH A2268 SITE 1 AC4 6 ARG A 142 GLY A 144 ASP A 166 ARG A 254 SITE 2 AC4 6 LYS A 257 HOH A2103 SITE 1 AC5 6 GLU A 243 ARG A 247 ASN A 248 HEM A 901 SITE 2 AC5 6 CL A 902 RFQ A 904 SITE 1 AC6 2 GLU A 2 GLU A 3 SITE 1 AC7 6 MET A 221 TYR A 355 PHE A 356 TYR A 357 SITE 2 AC7 6 HEM A 901 HOH A2028 SITE 1 AC8 6 TRP A 327 THR A 328 PHE A 342 ARG A 344 SITE 2 AC8 6 SER A 345 RFQ A 904 SITE 1 AC9 9 GLY A 159 TRP A 160 ARG A 161 TRP A 238 SITE 2 AC9 9 SER A 298 ILE A 299 GLN A 308 HOH A2220 SITE 3 AC9 9 HOH A2272 CRYST1 80.550 94.943 62.133 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012415 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010533 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016095 0.00000