HEADER CELL ADHESION 24-OCT-14 4D40 TITLE HIGH-RESOLUTION STRUCTURE OF A TYPE IV PILIN FROM SHEWANELLA TITLE 2 ONEIDENSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PILD PROCESSED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 36-123; COMPND 5 SYNONYM: TYPE IV PILUS PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: CYS BRIDGE BETWEEN CYS69 AND CYS86 IN CHAIN A AND B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA ONEIDENSIS; SOURCE 3 ORGANISM_TAXID: 211586; SOURCE 4 STRAIN: MR-1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ORIGAMI; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET46 KEYWDS CELL ADHESION, PILUS, PILA EXPDTA X-RAY DIFFRACTION AUTHOR M.GORGEL,J.JENSENULSTRUP,A.BOEGGILD,P.NISSEN,T.BOESEN REVDAT 3 20-DEC-23 4D40 1 REMARK LINK REVDAT 2 23-OCT-19 4D40 1 ATOM REVDAT 1 29-APR-15 4D40 0 JRNL AUTH M.GORGEL,J.J.ULSTRUP,A.BOGGILD,N.C.JONES,S.V.HOFFMANN, JRNL AUTH 2 P.NISSEN,T.BOESEN JRNL TITL HIGH-RESOLUTION STRUCTURE OF A TYPE IV PILIN FROM THE METAL- JRNL TITL 2 REDUCING BACTERIUM SHEWANELLA ONEIDENSIS. JRNL REF BMC STRUCT.BIOL. V. 15 4 2015 JRNL REFN ESSN 1472-6807 JRNL PMID 25886849 JRNL DOI 10.1186/S12900-015-0031-7 REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.250 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 56943 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.600 REMARK 3 FREE R VALUE TEST SET COUNT : 3753 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.7294 - 5.0050 0.98 2004 143 0.1716 0.1737 REMARK 3 2 5.0050 - 3.9734 0.99 2010 137 0.1349 0.1580 REMARK 3 3 3.9734 - 3.4713 0.97 1958 141 0.1465 0.1753 REMARK 3 4 3.4713 - 3.1541 0.97 1965 140 0.1674 0.1615 REMARK 3 5 3.1541 - 2.9280 0.97 1966 138 0.1674 0.1940 REMARK 3 6 2.9280 - 2.7554 0.97 1945 139 0.1874 0.2492 REMARK 3 7 2.7554 - 2.6174 0.97 1993 143 0.1783 0.2252 REMARK 3 8 2.6174 - 2.5035 0.98 1975 143 0.1789 0.2166 REMARK 3 9 2.5035 - 2.4071 0.98 1947 140 0.1789 0.2096 REMARK 3 10 2.4071 - 2.3241 0.98 2025 139 0.1702 0.2340 REMARK 3 11 2.3241 - 2.2514 0.98 1981 137 0.1850 0.2010 REMARK 3 12 2.2514 - 2.1871 0.98 1983 136 0.1725 0.2150 REMARK 3 13 2.1871 - 2.1295 0.99 1989 139 0.1709 0.2270 REMARK 3 14 2.1295 - 2.0775 0.97 1973 131 0.1811 0.2210 REMARK 3 15 2.0775 - 2.0303 0.97 1960 140 0.1837 0.1782 REMARK 3 16 2.0303 - 1.9871 0.97 2013 142 0.1852 0.1970 REMARK 3 17 1.9871 - 1.9474 0.98 1969 141 0.2052 0.2311 REMARK 3 18 1.9474 - 1.9106 0.96 1941 136 0.2145 0.2491 REMARK 3 19 1.9106 - 1.8765 0.98 1941 141 0.2270 0.2583 REMARK 3 20 1.8765 - 1.8447 0.96 1974 143 0.2304 0.2591 REMARK 3 21 1.8447 - 1.8149 0.98 1979 136 0.2415 0.2631 REMARK 3 22 1.8149 - 1.7870 0.96 1951 140 0.2591 0.3160 REMARK 3 23 1.7870 - 1.7607 0.98 1936 140 0.2924 0.3593 REMARK 3 24 1.7607 - 1.7359 0.97 1997 139 0.2960 0.3600 REMARK 3 25 1.7359 - 1.7124 0.96 1934 136 0.3254 0.3463 REMARK 3 26 1.7124 - 1.6902 0.98 1984 139 0.3362 0.4169 REMARK 3 27 1.6902 - 1.6691 0.93 1897 134 0.3572 0.4295 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.11 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 1454 REMARK 3 ANGLE : 1.012 1976 REMARK 3 CHIRALITY : 0.038 202 REMARK 3 PLANARITY : 0.005 262 REMARK 3 DIHEDRAL : 11.515 528 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0369 4.5605 130.9926 REMARK 3 T TENSOR REMARK 3 T11: 0.1072 T22: 0.1824 REMARK 3 T33: 0.1581 T12: -0.0027 REMARK 3 T13: 0.0363 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 4.8134 L22: 6.2792 REMARK 3 L33: 3.9762 L12: 2.2961 REMARK 3 L13: 2.5099 L23: 2.4277 REMARK 3 S TENSOR REMARK 3 S11: 0.0549 S12: -0.1599 S13: -0.0019 REMARK 3 S21: 0.0899 S22: -0.0892 S23: 0.1087 REMARK 3 S31: 0.1212 S32: -0.3915 S33: 0.0634 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 42 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.4160 3.4127 124.2406 REMARK 3 T TENSOR REMARK 3 T11: 0.1933 T22: 0.1456 REMARK 3 T33: 0.2292 T12: -0.0222 REMARK 3 T13: 0.0507 T23: -0.0394 REMARK 3 L TENSOR REMARK 3 L11: 2.9874 L22: 4.2214 REMARK 3 L33: 5.4740 L12: 0.3552 REMARK 3 L13: 1.7939 L23: 1.7222 REMARK 3 S TENSOR REMARK 3 S11: -0.0595 S12: 0.1059 S13: -0.1010 REMARK 3 S21: -0.3771 S22: 0.1188 S23: -0.3349 REMARK 3 S31: -0.1056 S32: -0.0891 S33: -0.0263 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.8777 16.3495 135.2036 REMARK 3 T TENSOR REMARK 3 T11: 0.1714 T22: 0.1677 REMARK 3 T33: 0.2092 T12: -0.0293 REMARK 3 T13: 0.0324 T23: -0.0292 REMARK 3 L TENSOR REMARK 3 L11: 6.4243 L22: 6.4835 REMARK 3 L33: 8.6379 L12: 0.7388 REMARK 3 L13: 2.9333 L23: 3.1446 REMARK 3 S TENSOR REMARK 3 S11: 0.1400 S12: -0.4114 S13: 0.0191 REMARK 3 S21: 0.4298 S22: -0.0551 S23: 0.0572 REMARK 3 S31: 0.5554 S32: -0.1561 S33: -0.0836 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 28 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.5224 21.2925 134.3228 REMARK 3 T TENSOR REMARK 3 T11: 0.1437 T22: 0.2581 REMARK 3 T33: 0.2567 T12: -0.0063 REMARK 3 T13: 0.0394 T23: -0.1024 REMARK 3 L TENSOR REMARK 3 L11: 1.9310 L22: 3.3429 REMARK 3 L33: 6.9651 L12: -0.2402 REMARK 3 L13: 0.7326 L23: 0.8818 REMARK 3 S TENSOR REMARK 3 S11: 0.1311 S12: -0.2787 S13: 0.3684 REMARK 3 S21: 0.1054 S22: 0.0959 S23: -0.2135 REMARK 3 S31: 0.1486 S32: 0.4653 S33: -0.2821 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 49 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.8387 30.8811 146.1108 REMARK 3 T TENSOR REMARK 3 T11: 0.5322 T22: 0.4983 REMARK 3 T33: 0.5020 T12: -0.0662 REMARK 3 T13: 0.1023 T23: -0.3098 REMARK 3 L TENSOR REMARK 3 L11: 1.2843 L22: 1.5995 REMARK 3 L33: 1.9180 L12: 0.7568 REMARK 3 L13: 1.4280 L23: 0.2242 REMARK 3 S TENSOR REMARK 3 S11: -0.0278 S12: -0.2902 S13: 0.2451 REMARK 3 S21: 0.5887 S22: 0.0792 S23: -0.0404 REMARK 3 S31: -0.4164 S32: 0.0462 S33: -0.1392 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 55 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.7061 24.7984 131.5723 REMARK 3 T TENSOR REMARK 3 T11: 0.1807 T22: 0.1791 REMARK 3 T33: 0.2936 T12: 0.0104 REMARK 3 T13: 0.0428 T23: -0.0662 REMARK 3 L TENSOR REMARK 3 L11: 2.4740 L22: 5.0688 REMARK 3 L33: 4.0995 L12: -2.0191 REMARK 3 L13: -2.5659 L23: 4.2803 REMARK 3 S TENSOR REMARK 3 S11: 0.2575 S12: -0.1533 S13: 0.6312 REMARK 3 S21: -0.1115 S22: 0.0609 S23: -0.0344 REMARK 3 S31: -1.0327 S32: -0.2289 S33: -0.2936 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 62 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.2180 22.9581 122.4257 REMARK 3 T TENSOR REMARK 3 T11: 0.3004 T22: 0.2064 REMARK 3 T33: 0.2341 T12: 0.0325 REMARK 3 T13: 0.0308 T23: 0.0151 REMARK 3 L TENSOR REMARK 3 L11: 7.7938 L22: 7.2662 REMARK 3 L33: 5.0516 L12: -1.8989 REMARK 3 L13: -2.8943 L23: 3.5188 REMARK 3 S TENSOR REMARK 3 S11: 0.1745 S12: 0.7620 S13: 0.3424 REMARK 3 S21: -0.9414 S22: -0.1558 S23: -0.0063 REMARK 3 S31: -0.2914 S32: -0.2252 S33: -0.1030 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 76 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.0874 22.9348 131.1864 REMARK 3 T TENSOR REMARK 3 T11: 0.2057 T22: 0.2185 REMARK 3 T33: 0.2961 T12: 0.0340 REMARK 3 T13: -0.0218 T23: -0.0464 REMARK 3 L TENSOR REMARK 3 L11: 5.7002 L22: 2.6253 REMARK 3 L33: 7.2508 L12: 0.5758 REMARK 3 L13: -2.0068 L23: 3.5744 REMARK 3 S TENSOR REMARK 3 S11: 0.0066 S12: 0.2949 S13: 0.2535 REMARK 3 S21: -0.1990 S22: -0.2415 S23: 0.4431 REMARK 3 S31: -0.2168 S32: -0.8217 S33: 0.2287 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4D40 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1290062127. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : SI-111 CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56946 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.670 REMARK 200 RESOLUTION RANGE LOW (A) : 48.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 1.960 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.95 REMARK 200 R MERGE FOR SHELL (I) : 0.64000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.240 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 4US7 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26% PEG 8,000 0.1 M CHES PH 8.6 0.15 M REMARK 280 (NH4)2SO4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 24.45500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.23000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 55.16500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 24.45500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.23000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.16500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 24.45500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 48.23000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.16500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 24.45500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 48.23000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 55.16500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2002 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2049 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 85 -0.91 71.99 REMARK 500 LYS B 52 16.75 59.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A3084 DISTANCE = 5.85 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B1091 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU B 36 O REMARK 620 2 ASN B 38 OD1 90.8 REMARK 620 3 PHE B 44 O 111.5 87.6 REMARK 620 4 HOH B2036 O 87.0 169.9 84.1 REMARK 620 5 HOH B2037 O 74.9 88.1 172.3 100.8 REMARK 620 6 HOH B2039 O 165.6 80.4 79.7 103.6 93.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1090 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 1091 DBREF 4D40 A 2 89 UNP Q8EII5 Q8EII5_SHEON 36 123 DBREF 4D40 B 2 89 UNP Q8EII5 Q8EII5_SHEON 36 123 SEQADV 4D40 GLY A 1 UNP Q8EII5 EXPRESSION TAG SEQADV 4D40 GLY B 1 UNP Q8EII5 EXPRESSION TAG SEQRES 1 A 89 GLY LYS GLN GLY ARG ARG PHE ASP ALA GLN GLN TYR LEU SEQRES 2 A 89 VAL THR SER ALA GLN ALA LEU GLU ARG HIS TYR SER ARG SEQRES 3 A 89 ASN GLY LEU TYR PRO ALA SER GLN SER LEU ALA ASN SER SEQRES 4 A 89 PRO TYR TYR SER PHE SER TYR THR PRO THR ALA ASP LYS SEQRES 5 A 89 PHE GLY PHE SER LEU LYS ALA VAL PRO THR ASN ARG GLN SEQRES 6 A 89 SER ASP PRO CYS GLY THR LEU SER LEU ASP HIS LYS GLY SEQRES 7 A 89 VAL ARG VAL PRO ALA THR ASN CYS TRP SER HIS SEQRES 1 B 89 GLY LYS GLN GLY ARG ARG PHE ASP ALA GLN GLN TYR LEU SEQRES 2 B 89 VAL THR SER ALA GLN ALA LEU GLU ARG HIS TYR SER ARG SEQRES 3 B 89 ASN GLY LEU TYR PRO ALA SER GLN SER LEU ALA ASN SER SEQRES 4 B 89 PRO TYR TYR SER PHE SER TYR THR PRO THR ALA ASP LYS SEQRES 5 B 89 PHE GLY PHE SER LEU LYS ALA VAL PRO THR ASN ARG GLN SEQRES 6 B 89 SER ASP PRO CYS GLY THR LEU SER LEU ASP HIS LYS GLY SEQRES 7 B 89 VAL ARG VAL PRO ALA THR ASN CYS TRP SER HIS HET SO4 B1090 5 HET NA B1091 1 HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION FORMUL 3 SO4 O4 S 2- FORMUL 4 NA NA 1+ FORMUL 5 HOH *219(H2 O) HELIX 1 1 GLY A 1 GLY A 28 1 28 HELIX 2 2 GLY B 1 GLY B 28 1 28 SHEET 1 AA 4 TYR A 42 PRO A 48 0 SHEET 2 AA 4 PHE A 55 PRO A 61 -1 O SER A 56 N THR A 47 SHEET 3 AA 4 LEU A 72 ASP A 75 -1 O LEU A 72 N ALA A 59 SHEET 4 AA 4 ARG A 80 VAL A 81 -1 O VAL A 81 N SER A 73 SHEET 1 BA 4 TYR B 42 PRO B 48 0 SHEET 2 BA 4 PHE B 55 PRO B 61 -1 O SER B 56 N THR B 47 SHEET 3 BA 4 LEU B 72 ASP B 75 -1 O LEU B 72 N ALA B 59 SHEET 4 BA 4 ARG B 80 VAL B 81 -1 O VAL B 81 N SER B 73 SSBOND 1 CYS A 69 CYS A 86 1555 1555 2.05 SSBOND 2 CYS B 69 CYS B 86 1555 1555 2.04 LINK O LEU B 36 NA NA B1091 1555 1555 2.58 LINK OD1 ASN B 38 NA NA B1091 1555 1555 2.61 LINK O PHE B 44 NA NA B1091 1555 1555 2.45 LINK NA NA B1091 O HOH B2036 1555 1555 2.58 LINK NA NA B1091 O HOH B2037 1555 1555 2.49 LINK NA NA B1091 O HOH B2039 1555 1555 2.41 CISPEP 1 VAL A 81 PRO A 82 0 -5.47 CISPEP 2 VAL B 81 PRO B 82 0 -3.07 SITE 1 AC1 5 ARG A 5 TYR A 41 GLY B 1 GLN B 3 SITE 2 AC1 5 GLY B 4 SITE 1 AC2 6 LEU B 36 ASN B 38 PHE B 44 HOH B2036 SITE 2 AC2 6 HOH B2037 HOH B2039 CRYST1 48.910 96.460 110.330 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020446 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010367 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009064 0.00000