HEADER TRANSFERASE 27-OCT-14 4D48 TITLE CRYSTAL STRUCTURE OF GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE GALU FROM TITLE 2 ERWINIA AMYLOVORA. COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.7.9; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ERWINIA AMYLOVORA; SOURCE 3 ORGANISM_TAXID: 665029; SOURCE 4 STRAIN: CFBP1430; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PETM-11 KEYWDS TRANSFERASE, AMYLOVORAN BIOSYNTHESIS, UDP-GLUCOSE, FIRE BLIGHT EXPDTA X-RAY DIFFRACTION AUTHOR M.TOCCAFONDI,J.WUERGES,M.CIANCI,S.BENINI REVDAT 3 20-DEC-23 4D48 1 REMARK REVDAT 2 14-MAR-18 4D48 1 TITLE REVDAT 1 20-JAN-16 4D48 0 JRNL AUTH S.BENINI,M.TOCCAFONDI,M.REJZEK,F.MUSIANI,B.A.WAGSTAFF, JRNL AUTH 2 J.WUERGES,M.CIANCI,R.A.FIELD JRNL TITL GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE FROM ERWINIA JRNL TITL 2 AMYLOVORA: ACTIVITY, STRUCTURE AND SUBSTRATE SPECIFICITY. JRNL REF BIOCHIM. BIOPHYS. ACTA V.1865 1348 2017 JRNL REFN ISSN 0006-3002 JRNL PMID 28844747 JRNL DOI 10.1016/J.BBAPAP.2017.08.015 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.TOCCAFONDI,M.CIANCI,S.BENINI REMARK 1 TITL EXPRESSION, PURIFICATION, CRYSTALLIZATION AND PRELIMINARY REMARK 1 TITL 2 X-RAY ANALYSIS OF GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE REMARK 1 TITL 3 (GALU) FROM ERWINIA AMYLOVORA. REMARK 1 REF ACTA CRYSTALLOGR F STRUCT V. 70 1249 2014 REMARK 1 REF 2 BIOL COMMUN REMARK 1 REFN ESSN 2053-230X REMARK 1 PMID 25195902 REMARK 1 DOI 10.1107/S2053230X14016458 REMARK 2 REMARK 2 RESOLUTION. 2.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 64.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 21211 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.245 REMARK 3 R VALUE (WORKING SET) : 0.244 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1137 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.46 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.53 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1401 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.28 REMARK 3 BIN R VALUE (WORKING SET) : 0.3370 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.4070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4345 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 14 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.25000 REMARK 3 B22 (A**2) : -0.25000 REMARK 3 B33 (A**2) : 0.81000 REMARK 3 B12 (A**2) : -0.25000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.658 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.311 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.298 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 28.167 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.923 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4425 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4330 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6012 ; 1.514 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10007 ; 0.991 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 563 ; 7.514 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 177 ;34.741 ;25.819 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 772 ;18.938 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;15.759 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 707 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4935 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 875 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 298 REMARK 3 ORIGIN FOR THE GROUP (A): 2.7277 29.3768 -17.7109 REMARK 3 T TENSOR REMARK 3 T11: 0.1270 T22: 0.3537 REMARK 3 T33: 0.0666 T12: -0.0683 REMARK 3 T13: 0.0013 T23: -0.0949 REMARK 3 L TENSOR REMARK 3 L11: 2.9047 L22: 1.0240 REMARK 3 L33: 2.3621 L12: 0.2509 REMARK 3 L13: 0.6775 L23: 0.1309 REMARK 3 S TENSOR REMARK 3 S11: 0.0426 S12: 0.5277 S13: 0.0229 REMARK 3 S21: -0.2226 S22: -0.0496 S23: 0.1908 REMARK 3 S31: -0.0276 S32: -0.0286 S33: 0.0071 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 298 REMARK 3 ORIGIN FOR THE GROUP (A): 7.3865 21.8414 17.7761 REMARK 3 T TENSOR REMARK 3 T11: 0.1889 T22: 0.2320 REMARK 3 T33: 0.1231 T12: -0.0838 REMARK 3 T13: 0.0576 T23: 0.0163 REMARK 3 L TENSOR REMARK 3 L11: 2.9402 L22: 1.4716 REMARK 3 L33: 3.7106 L12: 0.4626 REMARK 3 L13: 0.8867 L23: -0.5582 REMARK 3 S TENSOR REMARK 3 S11: 0.0310 S12: -0.3677 S13: -0.5276 REMARK 3 S21: 0.3201 S22: -0.0032 S23: -0.0495 REMARK 3 S31: 0.2614 S32: -0.2599 S33: -0.0278 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED. THE FOLLOWING RESIDUES WERE REMARK 3 DISORDERED 1-4, 84-87, 233-238, 299-302 REMARK 4 REMARK 4 4D48 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1290062151. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12434 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.460 REMARK 200 RESOLUTION RANGE LOW (A) : 66.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: PDB ENTRY 2E3D REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M AMMONIUM SULFATE, 0.1 M TRIS PH REMARK 280 8.5, 5% ETHYLENE GLYCOL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 112.78800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 56.39400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 112.78800 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 56.39400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ALA A 3 REMARK 465 TYR A 4 REMARK 465 LYS A 84 REMARK 465 ARG A 85 REMARK 465 VAL A 86 REMARK 465 LYS A 87 REMARK 465 PRO A 233 REMARK 465 GLY A 234 REMARK 465 ALA A 235 REMARK 465 GLY A 236 REMARK 465 ASP A 237 REMARK 465 GLU A 238 REMARK 465 GLY A 299 REMARK 465 ASN A 300 REMARK 465 LYS A 301 REMARK 465 LYS A 302 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ALA B 3 REMARK 465 TYR B 4 REMARK 465 LYS B 84 REMARK 465 ARG B 85 REMARK 465 VAL B 86 REMARK 465 LYS B 87 REMARK 465 PRO B 233 REMARK 465 GLY B 234 REMARK 465 ALA B 235 REMARK 465 GLY B 236 REMARK 465 ASP B 237 REMARK 465 GLY B 299 REMARK 465 ASN B 300 REMARK 465 LYS B 301 REMARK 465 LYS B 302 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 69 NE2 GLN B 106 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ASP B 174 O ASP B 174 4555 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 37 -90.39 56.76 REMARK 500 ALA A 112 96.27 -67.09 REMARK 500 ASN A 151 -124.53 57.64 REMARK 500 LYS A 202 63.95 33.32 REMARK 500 SER A 210 -173.45 -172.28 REMARK 500 VAL B 37 -88.75 55.68 REMARK 500 ALA B 112 95.98 -68.59 REMARK 500 LYS B 149 -12.24 -150.28 REMARK 500 ASN B 151 -124.33 57.76 REMARK 500 ALA B 173 47.67 -98.10 REMARK 500 ASP B 174 -129.43 -163.31 REMARK 500 LYS B 202 62.29 33.77 REMARK 500 SER B 210 -172.60 -173.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP B 174 VAL B 175 64.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4D47 RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF THE LEVANSUCRASE FROM ERWINIA AMYLOVORA DBREF 4D48 A 1 302 UNP D4I3X5 D4I3X5_ERWAC 1 302 DBREF 4D48 B 1 302 UNP D4I3X5 D4I3X5_ERWAC 1 302 SEQRES 1 A 302 MET SER ALA TYR ASN SER LYS VAL LYS LYS ALA VAL ILE SEQRES 2 A 302 PRO VAL ALA GLY LEU GLY THR ARG MET LEU PRO ALA THR SEQRES 3 A 302 LYS ALA ILE PRO LYS GLU MET LEU PRO LEU VAL ASP LYS SEQRES 4 A 302 PRO LEU ILE GLN TYR VAL VAL ASN GLU CYS ILE ALA ALA SEQRES 5 A 302 GLY ILE ASN GLU ILE VAL LEU VAL THR HIS SER SER LYS SEQRES 6 A 302 ASN SER ILE GLU ASN HIS PHE ASP THR SER PHE GLU LEU SEQRES 7 A 302 GLU ALA MET LEU GLU LYS ARG VAL LYS ARG GLN LEU LEU SEQRES 8 A 302 GLU GLU ILE GLN SER ILE CYS PRO PRO HIS VAL THR ILE SEQRES 9 A 302 MET GLN VAL ARG GLN GLY LEU ALA LYS GLY LEU GLY HIS SEQRES 10 A 302 ALA VAL MET CYS ALA TRP PRO VAL ILE GLY ASN GLU PRO SEQRES 11 A 302 VAL ALA VAL ILE LEU PRO ASP VAL ILE LEU ASP GLU TYR SEQRES 12 A 302 GLU SER ASP LEU SER LYS ASP ASN LEU ALA GLU MET ILE SEQRES 13 A 302 ARG ARG PHE ASP GLU THR GLY HIS SER GLN ILE MET VAL SEQRES 14 A 302 GLU PRO VAL ALA ASP VAL THR ALA TYR GLY VAL VAL ASP SEQRES 15 A 302 CYS GLN GLY ALA GLN LEU ASN PRO GLY ASP SER ALA PRO SEQRES 16 A 302 MET VAL GLY VAL VAL GLU LYS PRO LYS ALA ASP GLN ALA SEQRES 17 A 302 PRO SER ASN LEU ALA VAL VAL GLY ARG TYR VAL LEU SER SEQRES 18 A 302 ALA ASP ILE TRP PRO LEU LEU ALA LYS THR PRO PRO GLY SEQRES 19 A 302 ALA GLY ASP GLU ILE GLN LEU THR ASP SER ILE ALA MET SEQRES 20 A 302 LEU MET GLU LYS GLU THR VAL GLU ALA TYR HIS LEU LYS SEQRES 21 A 302 GLY VAL SER HIS ASP CYS GLY ASN LYS LEU GLY TYR MET SEQRES 22 A 302 GLN ALA PHE VAL GLU TYR GLY VAL ARG HIS GLU THR LEU SEQRES 23 A 302 GLY SER ASP PHE LYS ALA TRP LEU GLU SER ALA VAL GLY SEQRES 24 A 302 ASN LYS LYS SEQRES 1 B 302 MET SER ALA TYR ASN SER LYS VAL LYS LYS ALA VAL ILE SEQRES 2 B 302 PRO VAL ALA GLY LEU GLY THR ARG MET LEU PRO ALA THR SEQRES 3 B 302 LYS ALA ILE PRO LYS GLU MET LEU PRO LEU VAL ASP LYS SEQRES 4 B 302 PRO LEU ILE GLN TYR VAL VAL ASN GLU CYS ILE ALA ALA SEQRES 5 B 302 GLY ILE ASN GLU ILE VAL LEU VAL THR HIS SER SER LYS SEQRES 6 B 302 ASN SER ILE GLU ASN HIS PHE ASP THR SER PHE GLU LEU SEQRES 7 B 302 GLU ALA MET LEU GLU LYS ARG VAL LYS ARG GLN LEU LEU SEQRES 8 B 302 GLU GLU ILE GLN SER ILE CYS PRO PRO HIS VAL THR ILE SEQRES 9 B 302 MET GLN VAL ARG GLN GLY LEU ALA LYS GLY LEU GLY HIS SEQRES 10 B 302 ALA VAL MET CYS ALA TRP PRO VAL ILE GLY ASN GLU PRO SEQRES 11 B 302 VAL ALA VAL ILE LEU PRO ASP VAL ILE LEU ASP GLU TYR SEQRES 12 B 302 GLU SER ASP LEU SER LYS ASP ASN LEU ALA GLU MET ILE SEQRES 13 B 302 ARG ARG PHE ASP GLU THR GLY HIS SER GLN ILE MET VAL SEQRES 14 B 302 GLU PRO VAL ALA ASP VAL THR ALA TYR GLY VAL VAL ASP SEQRES 15 B 302 CYS GLN GLY ALA GLN LEU ASN PRO GLY ASP SER ALA PRO SEQRES 16 B 302 MET VAL GLY VAL VAL GLU LYS PRO LYS ALA ASP GLN ALA SEQRES 17 B 302 PRO SER ASN LEU ALA VAL VAL GLY ARG TYR VAL LEU SER SEQRES 18 B 302 ALA ASP ILE TRP PRO LEU LEU ALA LYS THR PRO PRO GLY SEQRES 19 B 302 ALA GLY ASP GLU ILE GLN LEU THR ASP SER ILE ALA MET SEQRES 20 B 302 LEU MET GLU LYS GLU THR VAL GLU ALA TYR HIS LEU LYS SEQRES 21 B 302 GLY VAL SER HIS ASP CYS GLY ASN LYS LEU GLY TYR MET SEQRES 22 B 302 GLN ALA PHE VAL GLU TYR GLY VAL ARG HIS GLU THR LEU SEQRES 23 B 302 GLY SER ASP PHE LYS ALA TRP LEU GLU SER ALA VAL GLY SEQRES 24 B 302 ASN LYS LYS FORMUL 3 HOH *14(H2 O) HELIX 1 1 PRO A 30 MET A 33 5 4 HELIX 2 2 LEU A 41 ALA A 52 1 12 HELIX 3 3 LYS A 65 ASP A 73 1 9 HELIX 4 4 SER A 75 LEU A 82 1 8 HELIX 5 5 ARG A 88 SER A 96 1 9 HELIX 6 6 GLY A 114 CYS A 121 1 8 HELIX 7 7 ALA A 122 GLY A 127 1 6 HELIX 8 8 ASN A 151 GLY A 163 1 13 HELIX 9 9 LYS A 204 ALA A 208 5 5 HELIX 10 10 ASP A 223 LEU A 228 1 6 HELIX 11 11 GLN A 240 GLU A 252 1 13 HELIX 12 12 ASN A 268 HIS A 283 1 16 HELIX 13 13 LEU A 286 VAL A 298 1 13 HELIX 14 14 PRO B 30 MET B 33 5 4 HELIX 15 15 LEU B 41 ALA B 52 1 12 HELIX 16 16 LYS B 65 ASP B 73 1 9 HELIX 17 17 SER B 75 LEU B 82 1 8 HELIX 18 18 ARG B 88 SER B 96 1 9 HELIX 19 19 GLY B 114 CYS B 121 1 8 HELIX 20 20 ALA B 122 GLY B 127 1 6 HELIX 21 21 ASN B 151 GLY B 163 1 13 HELIX 22 22 LYS B 204 ALA B 208 5 5 HELIX 23 23 ASP B 223 LEU B 228 1 6 HELIX 24 24 GLN B 240 GLU B 252 1 13 HELIX 25 25 ASN B 268 HIS B 283 1 16 HELIX 26 26 LEU B 286 VAL B 298 1 13 SHEET 1 AA 8 THR A 103 ARG A 108 0 SHEET 2 AA 8 GLU A 56 THR A 61 1 O ILE A 57 N MET A 105 SHEET 3 AA 8 LYS A 10 PRO A 14 1 O ALA A 11 N VAL A 58 SHEET 4 AA 8 VAL A 131 ILE A 134 1 O ALA A 132 N VAL A 12 SHEET 5 AA 8 LEU A 212 LEU A 220 -1 O TYR A 218 N VAL A 133 SHEET 6 AA 8 SER A 165 PRO A 171 -1 O GLN A 166 N VAL A 219 SHEET 7 AA 8 VAL A 254 HIS A 258 1 O GLU A 255 N ILE A 167 SHEET 8 AA 8 SER A 193 MET A 196 -1 O ALA A 194 N ALA A 256 SHEET 1 AB 2 PRO A 35 LEU A 36 0 SHEET 2 AB 2 LYS A 39 PRO A 40 -1 O LYS A 39 N LEU A 36 SHEET 1 AC 2 VAL A 138 LEU A 140 0 SHEET 2 AC 2 SER A 263 ASP A 265 -1 O HIS A 264 N ILE A 139 SHEET 1 AD 2 GLY A 179 ASP A 182 0 SHEET 2 AD 2 GLY A 198 GLU A 201 -1 O GLY A 198 N ASP A 182 SHEET 1 BA 8 THR B 103 ARG B 108 0 SHEET 2 BA 8 GLU B 56 THR B 61 1 O ILE B 57 N MET B 105 SHEET 3 BA 8 LYS B 10 PRO B 14 1 O ALA B 11 N VAL B 58 SHEET 4 BA 8 VAL B 131 ILE B 134 1 O ALA B 132 N VAL B 12 SHEET 5 BA 8 LEU B 212 LEU B 220 -1 O TYR B 218 N VAL B 133 SHEET 6 BA 8 SER B 165 PRO B 171 -1 O GLN B 166 N VAL B 219 SHEET 7 BA 8 VAL B 254 HIS B 258 1 O GLU B 255 N ILE B 167 SHEET 8 BA 8 SER B 193 MET B 196 -1 O ALA B 194 N ALA B 256 SHEET 1 BB 2 PRO B 35 LEU B 36 0 SHEET 2 BB 2 LYS B 39 PRO B 40 -1 O LYS B 39 N LEU B 36 SHEET 1 BC 2 VAL B 138 LEU B 140 0 SHEET 2 BC 2 SER B 263 ASP B 265 -1 O HIS B 264 N ILE B 139 SHEET 1 BD 2 GLY B 179 ASP B 182 0 SHEET 2 BD 2 GLY B 198 GLU B 201 -1 O GLY B 198 N ASP B 182 CISPEP 1 LEU A 23 PRO A 24 0 -1.01 CISPEP 2 LEU B 23 PRO B 24 0 4.73 CRYST1 80.673 80.673 169.182 90.00 90.00 120.00 P 62 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012396 0.007157 0.000000 0.00000 SCALE2 0.000000 0.014313 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005911 0.00000 MTRIX1 1 0.466000 0.884800 -0.001262 -20.02000 1 MTRIX2 1 0.884800 -0.466000 -0.004734 33.17000 1 MTRIX3 1 -0.004776 0.001090 -1.000000 0.06046 1