HEADER HYDROLASE 03-NOV-14 4D56 TITLE UNDERSTANDING BI-SPECIFICITY OF A-DOMAINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: APNAA1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: APNA A1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLANKTOTHRIX AGARDHII; SOURCE 3 ORGANISM_TAXID: 1160; SOURCE 4 STRAIN: PCC7821; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS HYDROLASE, NON-RIBOSOMAL PEPTIDE SYNTHETASE, ADENYLATION, A DOMAIN EXPDTA X-RAY DIFFRACTION AUTHOR H.KALJUNEN,S.H.H.SCHIEFELBEIN,D.STUMMER,S.KOZAK,R.MEIJERS, AUTHOR 2 G.CHRISTIANSEN,A.RENTMEISTER REVDAT 5 20-DEC-23 4D56 1 REMARK LINK REVDAT 4 07-MAR-18 4D56 1 SOURCE REMARK REVDAT 3 29-JUL-15 4D56 1 JRNL REVDAT 2 15-JUL-15 4D56 1 REMARK REVDAT 1 01-JUL-15 4D56 0 JRNL AUTH H.KALJUNEN,S.H.H.SCHIEFELBEIN,D.STUMMER,S.KOZAK,R.MEIJERS, JRNL AUTH 2 G.CHRISTIANSEN,A.RENTMEISTER JRNL TITL STRUCTURAL ELUCIDATION OF THE BISPECIFICITY OF A DOMAINS AS JRNL TITL 2 A BASIS FOR ACTIVATING NON-NATURAL AMINO ACIDS. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 54 8833 2015 JRNL REFN ISSN 1433-7851 JRNL PMID 26096082 JRNL DOI 10.1002/ANGE.201503275 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 28651 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1541 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2070 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE SET COUNT : 93 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3808 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 51 REMARK 3 SOLVENT ATOMS : 163 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.89000 REMARK 3 B22 (A**2) : 0.68000 REMARK 3 B33 (A**2) : -1.57000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.217 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.180 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3976 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3836 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5428 ; 1.955 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8823 ; 3.599 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 492 ; 6.691 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 172 ;38.143 ;24.767 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 684 ;14.938 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;16.781 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 640 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4458 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 882 ; 0.015 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1948 ; 2.665 ; 2.765 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1949 ; 2.664 ; 2.765 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2437 ; 3.893 ; 4.125 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2028 ; 3.297 ; 3.216 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4D56 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1290061915. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL (SI111, SI311) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30246 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 82.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.66000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1AMU REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24-30% POLYETHYLENE GLYCOL 3350 0.1 M REMARK 280 MES OR BIS-TRIS PH 5.5 - 6., PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.08300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.03200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.12100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.03200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.08300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.12100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -25 REMARK 465 LYS A -24 REMARK 465 HIS A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 PRO A -17 REMARK 465 MET A -16 REMARK 465 SER A -15 REMARK 465 ASP A -14 REMARK 465 TYR A -13 REMARK 465 ASP A -12 REMARK 465 ILE A -11 REMARK 465 PRO A -10 REMARK 465 THR A -9 REMARK 465 THR A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 GLU A 445 REMARK 465 ASP A 446 REMARK 465 PRO A 447 REMARK 465 LEU A 448 REMARK 465 GLY A 449 REMARK 465 ASN A 450 REMARK 465 LYS A 451 REMARK 465 ASN A 491 REMARK 465 GLU A 492 REMARK 465 LEU A 493 REMARK 465 PRO A 494 REMARK 465 LEU A 495 REMARK 465 SER A 496 REMARK 465 PRO A 497 REMARK 465 ASN A 498 REMARK 465 GLY A 499 REMARK 465 LYS A 500 REMARK 465 ILE A 501 REMARK 465 ASP A 502 REMARK 465 ARG A 503 REMARK 465 LYS A 504 REMARK 465 ALA A 505 REMARK 465 LEU A 506 REMARK 465 PRO A 507 REMARK 465 ILE A 508 REMARK 465 PRO A 509 REMARK 465 ASP A 510 REMARK 465 TYR A 511 REMARK 465 ASP A 512 REMARK 465 GLY A 513 REMARK 465 ASN A 514 REMARK 465 GLU A 515 REMARK 465 ARG A 516 REMARK 465 GLN A 517 REMARK 465 THR A 518 REMARK 465 PRO A 519 REMARK 465 PHE A 520 REMARK 465 ILE A 521 REMARK 465 ALA A 522 REMARK 465 PRO A 523 REMARK 465 ARG A 524 REMARK 465 ASN A 525 REMARK 465 HIS A 526 REMARK 465 GLN A 527 REMARK 465 GLU A 528 REMARK 465 GLU A 529 REMARK 465 LYS A 530 REMARK 465 LEU A 531 REMARK 465 ALA A 532 REMARK 465 ASN A 533 REMARK 465 ILE A 534 REMARK 465 TRP A 535 REMARK 465 HIS A 536 REMARK 465 GLN A 537 REMARK 465 VAL A 538 REMARK 465 PHE A 539 REMARK 465 GLY A 540 REMARK 465 LEU A 541 REMARK 465 GLU A 542 REMARK 465 LYS A 543 REMARK 465 ILE A 544 REMARK 465 GLY A 545 REMARK 465 VAL A 546 REMARK 465 ASN A 547 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 85 O HOH A 2054 1.66 REMARK 500 O1 PO4 A 1493 O HOH A 2121 1.78 REMARK 500 SG CYS A 60 O HOH A 2042 1.82 REMARK 500 O HOH A 2001 O HOH A 2164 1.85 REMARK 500 O HOH A 2001 O HOH A 2002 1.90 REMARK 500 O HOH A 2128 O HOH A 2129 2.04 REMARK 500 N TYR A 88 O HOH A 2054 2.18 REMARK 500 CB TYR A 88 O HOH A 2054 2.18 REMARK 500 O HOH A 2129 O HOH A 2130 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 107 -158.38 -149.82 REMARK 500 ILE A 306 -63.15 85.28 REMARK 500 GLU A 351 1.51 81.26 REMARK 500 SER A 384 68.38 -165.02 REMARK 500 ASP A 401 5.29 -69.48 REMARK 500 GLN A 435 52.31 -91.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1492 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1493 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1494 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: Binding site for Di-peptide TYR A1491 and AMP REMARK 800 A1591 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4D4G RELATED DB: PDB REMARK 900 UNDERSTANDING BI-SPECIFICITY OF A-DOMAINS REMARK 900 RELATED ID: 4D4H RELATED DB: PDB REMARK 900 UNDERSTANDING BI-SPECIFICITY OF A-DOMAINS REMARK 900 RELATED ID: 4D4I RELATED DB: PDB REMARK 900 UNDERSTANDING BI-SPECIFICITY OF A-DOMAINS REMARK 900 RELATED ID: 4D57 RELATED DB: PDB REMARK 900 UNDERSTANDING BI-SPECIFICITY OF A-DOMAINS DBREF 4D56 A 1 547 UNP G0WVH3 G0WVH3_PLARU 1 547 SEQADV 4D56 MET A -25 UNP G0WVH3 EXPRESSION TAG SEQADV 4D56 LYS A -24 UNP G0WVH3 EXPRESSION TAG SEQADV 4D56 HIS A -23 UNP G0WVH3 EXPRESSION TAG SEQADV 4D56 HIS A -22 UNP G0WVH3 EXPRESSION TAG SEQADV 4D56 HIS A -21 UNP G0WVH3 EXPRESSION TAG SEQADV 4D56 HIS A -20 UNP G0WVH3 EXPRESSION TAG SEQADV 4D56 HIS A -19 UNP G0WVH3 EXPRESSION TAG SEQADV 4D56 HIS A -18 UNP G0WVH3 EXPRESSION TAG SEQADV 4D56 PRO A -17 UNP G0WVH3 EXPRESSION TAG SEQADV 4D56 MET A -16 UNP G0WVH3 EXPRESSION TAG SEQADV 4D56 SER A -15 UNP G0WVH3 EXPRESSION TAG SEQADV 4D56 ASP A -14 UNP G0WVH3 EXPRESSION TAG SEQADV 4D56 TYR A -13 UNP G0WVH3 EXPRESSION TAG SEQADV 4D56 ASP A -12 UNP G0WVH3 EXPRESSION TAG SEQADV 4D56 ILE A -11 UNP G0WVH3 EXPRESSION TAG SEQADV 4D56 PRO A -10 UNP G0WVH3 EXPRESSION TAG SEQADV 4D56 THR A -9 UNP G0WVH3 EXPRESSION TAG SEQADV 4D56 THR A -8 UNP G0WVH3 EXPRESSION TAG SEQADV 4D56 GLU A -7 UNP G0WVH3 EXPRESSION TAG SEQADV 4D56 ASN A -6 UNP G0WVH3 EXPRESSION TAG SEQADV 4D56 LEU A -5 UNP G0WVH3 EXPRESSION TAG SEQADV 4D56 TYR A -4 UNP G0WVH3 EXPRESSION TAG SEQADV 4D56 PHE A -3 UNP G0WVH3 EXPRESSION TAG SEQADV 4D56 GLN A -2 UNP G0WVH3 EXPRESSION TAG SEQADV 4D56 GLY A -1 UNP G0WVH3 EXPRESSION TAG SEQADV 4D56 ALA A 0 UNP G0WVH3 EXPRESSION TAG SEQRES 1 A 573 MET LYS HIS HIS HIS HIS HIS HIS PRO MET SER ASP TYR SEQRES 2 A 573 ASP ILE PRO THR THR GLU ASN LEU TYR PHE GLN GLY ALA SEQRES 3 A 573 MET PHE LYS GLN SER ILE HIS GLN LEU PHE GLU THR GLN SEQRES 4 A 573 VAL GLU ARG THR PRO GLU ALA VAL ALA VAL LEU SER GLU SEQRES 5 A 573 GLN GLY GLN LEU THR TYR GLU GLU LEU ASN THR LYS ALA SEQRES 6 A 573 ASN GLN LEU ALA HIS TYR LEU ARG THR LEU GLY VAL LYS SEQRES 7 A 573 SER GLU THR LEU VAL GLY VAL CYS VAL ASP ARG SER LEU SEQRES 8 A 573 GLU MET VAL ILE GLY LEU LEU ALA ILE LEU LYS ALA GLY SEQRES 9 A 573 GLY ALA TYR VAL PRO LEU ASP PRO THR TYR PRO ARG GLU SEQRES 10 A 573 ARG LEU THR TYR MET VAL GLN ASP ALA GLN ILE SER VAL SEQRES 11 A 573 LEU VAL THR GLN THR GLN TRP SER ASN LEU ILE SER ASP SEQRES 12 A 573 TYR GLN GLY GLN VAL ILE CYS LEU ASP SER GLN TRP ALA SEQRES 13 A 573 LYS ILE ALA SER TYR SER GLN GLU ASN LEU VAL ASN THR SEQRES 14 A 573 VAL ASN PRO GLU ASN LEU ALA TYR VAL ILE TYR THR SER SEQRES 15 A 573 GLY SER THR GLY LYS PRO LYS GLY VAL MET ILE GLU HIS SEQRES 16 A 573 GLN SER LEU VAL ASN PHE THR LYS LEU ALA ILE ALA GLN SEQRES 17 A 573 TYR GLN ILE THR THR SER ASP ARG THR LEU GLN PHE VAL SEQRES 18 A 573 SER ILE SER PHE ASP VAL ALA ALA GLU GLU ILE TYR VAL SEQRES 19 A 573 THR LEU CYS SER GLY ALA THR LEU ILE LEU ARG THR GLU SEQRES 20 A 573 GLU MET ILE SER SER ILE PRO SER PHE VAL GLN LYS SER SEQRES 21 A 573 GLN ASP TRP GLN ILE THR VAL TRP SER LEU PRO THR ALA SEQRES 22 A 573 TYR TRP HIS LEU LEU VAL ASN GLU LEU VAL LYS SER LYS SEQRES 23 A 573 ILE ALA LEU PRO ASP SER LEU ARG LEU VAL ILE ILE GLY SEQRES 24 A 573 GLY GLU ARG VAL GLN PRO GLU LEU VAL ARG MET TRP PHE SEQRES 25 A 573 LYS ASN VAL GLY ASN PHE PRO GLU LEU ILE ASN VAL TYR SEQRES 26 A 573 GLY PRO THR GLU GLY THR ILE ALA VAL SER LEU CYS ARG SEQRES 27 A 573 LEU SER GLN LEU THR GLU SER GLN ARG ASN ARG THR GLU SEQRES 28 A 573 ILE PRO ILE GLY LYS SER LEU GLY GLU ASN ILE SER VAL SEQRES 29 A 573 TYR VAL LEU ASP GLU THR LEU LYS THR VAL PRO PRO GLU SEQRES 30 A 573 THR PRO GLY GLU ILE TYR ILE GLY GLY THR ALA LEU ALA SEQRES 31 A 573 ARG GLY TYR LEU ASN ARG PRO GLU LEU THR ALA GLN LYS SEQRES 32 A 573 PHE ILE GLN ASP PRO PHE SER PRO SER GLU ARG LEU TYR SEQRES 33 A 573 LYS THR GLY ASP LEU GLY ARG TYR LEU ALA ASP GLY ASN SEQRES 34 A 573 LEU GLU TYR LEU GLY ARG VAL ASP HIS GLN VAL LYS ILE SEQRES 35 A 573 ASN GLY PHE ARG VAL GLU LEU GLY GLU ILE GLU THR VAL SEQRES 36 A 573 LEU LEU GLN HIS HIS GLN VAL ALA GLN ALA VAL VAL ILE SEQRES 37 A 573 ASP ARG GLU ASP PRO LEU GLY ASN LYS ARG LEU VAL ALA SEQRES 38 A 573 TYR LEU VAL PRO HIS SER THR GLU GLU ASN LEU THR VAL SEQRES 39 A 573 THR LEU GLN GLN PHE LEU LYS ASN LYS LEU PRO SER TYR SEQRES 40 A 573 MET ILE PRO ALA THR PHE VAL VAL LEU ASN GLU LEU PRO SEQRES 41 A 573 LEU SER PRO ASN GLY LYS ILE ASP ARG LYS ALA LEU PRO SEQRES 42 A 573 ILE PRO ASP TYR ASP GLY ASN GLU ARG GLN THR PRO PHE SEQRES 43 A 573 ILE ALA PRO ARG ASN HIS GLN GLU GLU LYS LEU ALA ASN SEQRES 44 A 573 ILE TRP HIS GLN VAL PHE GLY LEU GLU LYS ILE GLY VAL SEQRES 45 A 573 ASN HET TYR A1491 12 HET PO4 A1492 5 HET PO4 A1493 5 HET GOL A1494 6 HET AMP A1591 23 HETNAM TYR TYROSINE HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETNAM AMP ADENOSINE MONOPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 TYR C9 H11 N O3 FORMUL 3 PO4 2(O4 P 3-) FORMUL 5 GOL C3 H8 O3 FORMUL 6 AMP C10 H14 N5 O7 P FORMUL 7 HOH *163(H2 O) HELIX 1 1 SER A 5 THR A 17 1 13 HELIX 2 2 TYR A 32 LEU A 49 1 18 HELIX 3 3 SER A 64 ALA A 77 1 14 HELIX 4 4 PRO A 89 ALA A 100 1 12 HELIX 5 5 THR A 109 SER A 112 5 4 HELIX 6 6 GLN A 128 SER A 134 1 7 HELIX 7 7 HIS A 169 GLN A 184 1 16 HELIX 8 8 ASP A 200 CYS A 211 1 12 HELIX 9 9 SER A 226 TRP A 237 1 12 HELIX 10 10 THR A 246 SER A 259 1 14 HELIX 11 11 GLN A 278 VAL A 289 1 12 HELIX 12 12 PRO A 301 THR A 305 5 5 HELIX 13 13 SER A 314 LEU A 316 5 3 HELIX 14 14 THR A 317 ASN A 322 1 6 HELIX 15 15 ARG A 370 LYS A 377 1 8 HELIX 16 16 LEU A 423 GLN A 432 1 10 HELIX 17 17 ASN A 465 ASN A 476 1 12 HELIX 18 18 PRO A 479 ILE A 483 5 5 SHEET 1 AA 4 GLY A 28 THR A 31 0 SHEET 2 AA 4 VAL A 21 SER A 25 -1 N ALA A 22 O LEU A 30 SHEET 3 AA 4 THR A 215 LEU A 218 1 O LEU A 216 N LEU A 24 SHEET 4 AA 4 ARG A 190 GLN A 193 1 O THR A 191 N ILE A 217 SHEET 1 AB 4 ALA A 80 PRO A 83 0 SHEET 2 AB 4 LEU A 56 CYS A 60 1 O VAL A 57 N VAL A 82 SHEET 3 AB 4 VAL A 104 THR A 107 1 O VAL A 104 N GLY A 58 SHEET 4 AB 4 GLN A 121 CYS A 124 1 O GLN A 121 N LEU A 105 SHEET 1 AC 3 LEU A 149 THR A 155 0 SHEET 2 AC 3 LYS A 163 GLU A 168 -1 O LYS A 163 N THR A 155 SHEET 3 AC 3 GLY A 366 TYR A 367 -1 O GLY A 366 N MET A 166 SHEET 1 AD 5 VAL A 241 PRO A 245 0 SHEET 2 AD 5 LEU A 269 GLY A 273 1 O LEU A 269 N TRP A 242 SHEET 3 AD 5 GLU A 294 TYR A 299 1 O GLU A 294 N VAL A 270 SHEET 4 AD 5 SER A 309 ARG A 312 -1 O SER A 309 N TYR A 299 SHEET 5 AD 5 LYS A 330 SER A 331 -1 O LYS A 330 N LEU A 310 SHEET 1 AE 4 ILE A 336 LEU A 341 0 SHEET 2 AE 4 GLY A 354 GLY A 360 -1 O GLU A 355 N LEU A 341 SHEET 3 AE 4 ARG A 388 TYR A 398 -1 O ARG A 388 N GLY A 360 SHEET 4 AE 4 LEU A 404 ARG A 409 1 O GLU A 405 N ARG A 397 SHEET 1 AF 4 ILE A 336 LEU A 341 0 SHEET 2 AF 4 GLY A 354 GLY A 360 -1 O GLU A 355 N LEU A 341 SHEET 3 AF 4 ARG A 388 TYR A 398 -1 O ARG A 388 N GLY A 360 SHEET 4 AF 4 PHE A 378 GLN A 380 -1 O ILE A 379 N LEU A 389 SHEET 1 AG 2 LEU A 404 ARG A 409 0 SHEET 2 AG 2 ARG A 388 TYR A 398 1 O LEU A 395 N LEU A 407 SHEET 1 AH 2 GLN A 413 ILE A 416 0 SHEET 2 AH 2 PHE A 419 GLU A 422 -1 O PHE A 419 N ILE A 416 SHEET 1 AI 3 GLN A 438 ASP A 443 0 SHEET 2 AI 3 LEU A 453 VAL A 458 -1 O VAL A 454 N ILE A 442 SHEET 3 AI 3 THR A 486 VAL A 489 1 O THR A 486 N ALA A 455 LINK C TYR A1491 O3P AMP A1591 1555 1555 1.47 CISPEP 1 PHE A 292 PRO A 293 0 -3.38 CISPEP 2 ASP A 443 ARG A 444 0 19.31 SITE 1 AC1 8 PHE A 194 VAL A 195 SER A 196 PHE A 199 SITE 2 AC1 8 ARG A 219 HOH A2046 HOH A2163 HOH A2164 SITE 1 AC2 10 PHE A 199 VAL A 201 GLY A 273 GLY A 274 SITE 2 AC2 10 LYS A 415 GLY A 418 TYR A1491 HOH A2106 SITE 3 AC2 10 HOH A2114 HOH A2121 SITE 1 AC3 4 TYR A 339 LEU A 345 THR A 347 ASP A 381 SITE 1 AC4 26 ASP A 200 VAL A 201 GLU A 204 ILE A 271 SITE 2 AC4 26 GLY A 273 GLY A 274 GLU A 275 ARG A 276 SITE 3 AC4 26 ASN A 297 VAL A 298 TYR A 299 GLY A 300 SITE 4 AC4 26 PRO A 301 THR A 302 ILE A 306 ILE A 328 SITE 5 AC4 26 ASP A 394 TYR A 406 ARG A 409 LYS A 415 SITE 6 AC4 26 ARG A 420 PO4 A1493 HOH A2113 HOH A2122 SITE 7 AC4 26 HOH A2158 HOH A2159 CRYST1 68.166 82.242 90.064 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014670 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012159 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011103 0.00000