data_4D5C # _entry.id 4D5C # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4D5C PDBE EBI-62153 WWPDB D_1290062153 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4D5F _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'TETRACYCLINE REPRESSOR CLASS H, APO FORM' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4D5C _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2014-11-03 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Palm, G.J.' 1 'Quast, J.' 2 'Hinrichs, W.' 3 # _citation.id primary _citation.title 'Domain Movement in Tetracycline Repressor Classes' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Palm, G.J.' 1 primary 'Quast, J.' 2 primary 'Hinrichs, W.' 3 # _cell.entry_id 4D5C _cell.length_a 55.150 _cell.length_b 106.060 _cell.length_c 70.080 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4D5C _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'TETRACYCLINE REPRESSOR PROTEIN TETR' 23282.387 1 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 3 water nat water 18.015 192 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'TETRACYCLINE REPRESSOR CLASS J' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;AKLDKEQVIDNALILLNEVGMEGLTTRKLAQKLGVEQPTLYWHVKNKRALLDALAETILQKHHHHVLPLANESWQDFLRN NAKSFRQALLMYRDGGKIHAGTRPSANQFETSEQQLQFLCDAGFTLTQAVYALSSIAHFTLGSVLETQEHQESQKEREKV PKTEINYPPLLTQAIDIMDSDNGEAAFLFVLDVMISGLETVLNNHH ; _entity_poly.pdbx_seq_one_letter_code_can ;AKLDKEQVIDNALILLNEVGMEGLTTRKLAQKLGVEQPTLYWHVKNKRALLDALAETILQKHHHHVLPLANESWQDFLRN NAKSFRQALLMYRDGGKIHAGTRPSANQFETSEQQLQFLCDAGFTLTQAVYALSSIAHFTLGSVLETQEHQESQKEREKV PKTEINYPPLLTQAIDIMDSDNGEAAFLFVLDVMISGLETVLNNHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 LYS n 1 3 LEU n 1 4 ASP n 1 5 LYS n 1 6 GLU n 1 7 GLN n 1 8 VAL n 1 9 ILE n 1 10 ASP n 1 11 ASN n 1 12 ALA n 1 13 LEU n 1 14 ILE n 1 15 LEU n 1 16 LEU n 1 17 ASN n 1 18 GLU n 1 19 VAL n 1 20 GLY n 1 21 MET n 1 22 GLU n 1 23 GLY n 1 24 LEU n 1 25 THR n 1 26 THR n 1 27 ARG n 1 28 LYS n 1 29 LEU n 1 30 ALA n 1 31 GLN n 1 32 LYS n 1 33 LEU n 1 34 GLY n 1 35 VAL n 1 36 GLU n 1 37 GLN n 1 38 PRO n 1 39 THR n 1 40 LEU n 1 41 TYR n 1 42 TRP n 1 43 HIS n 1 44 VAL n 1 45 LYS n 1 46 ASN n 1 47 LYS n 1 48 ARG n 1 49 ALA n 1 50 LEU n 1 51 LEU n 1 52 ASP n 1 53 ALA n 1 54 LEU n 1 55 ALA n 1 56 GLU n 1 57 THR n 1 58 ILE n 1 59 LEU n 1 60 GLN n 1 61 LYS n 1 62 HIS n 1 63 HIS n 1 64 HIS n 1 65 HIS n 1 66 VAL n 1 67 LEU n 1 68 PRO n 1 69 LEU n 1 70 ALA n 1 71 ASN n 1 72 GLU n 1 73 SER n 1 74 TRP n 1 75 GLN n 1 76 ASP n 1 77 PHE n 1 78 LEU n 1 79 ARG n 1 80 ASN n 1 81 ASN n 1 82 ALA n 1 83 LYS n 1 84 SER n 1 85 PHE n 1 86 ARG n 1 87 GLN n 1 88 ALA n 1 89 LEU n 1 90 LEU n 1 91 MET n 1 92 TYR n 1 93 ARG n 1 94 ASP n 1 95 GLY n 1 96 GLY n 1 97 LYS n 1 98 ILE n 1 99 HIS n 1 100 ALA n 1 101 GLY n 1 102 THR n 1 103 ARG n 1 104 PRO n 1 105 SER n 1 106 ALA n 1 107 ASN n 1 108 GLN n 1 109 PHE n 1 110 GLU n 1 111 THR n 1 112 SER n 1 113 GLU n 1 114 GLN n 1 115 GLN n 1 116 LEU n 1 117 GLN n 1 118 PHE n 1 119 LEU n 1 120 CYS n 1 121 ASP n 1 122 ALA n 1 123 GLY n 1 124 PHE n 1 125 THR n 1 126 LEU n 1 127 THR n 1 128 GLN n 1 129 ALA n 1 130 VAL n 1 131 TYR n 1 132 ALA n 1 133 LEU n 1 134 SER n 1 135 SER n 1 136 ILE n 1 137 ALA n 1 138 HIS n 1 139 PHE n 1 140 THR n 1 141 LEU n 1 142 GLY n 1 143 SER n 1 144 VAL n 1 145 LEU n 1 146 GLU n 1 147 THR n 1 148 GLN n 1 149 GLU n 1 150 HIS n 1 151 GLN n 1 152 GLU n 1 153 SER n 1 154 GLN n 1 155 LYS n 1 156 GLU n 1 157 ARG n 1 158 GLU n 1 159 LYS n 1 160 VAL n 1 161 PRO n 1 162 LYS n 1 163 THR n 1 164 GLU n 1 165 ILE n 1 166 ASN n 1 167 TYR n 1 168 PRO n 1 169 PRO n 1 170 LEU n 1 171 LEU n 1 172 THR n 1 173 GLN n 1 174 ALA n 1 175 ILE n 1 176 ASP n 1 177 ILE n 1 178 MET n 1 179 ASP n 1 180 SER n 1 181 ASP n 1 182 ASN n 1 183 GLY n 1 184 GLU n 1 185 ALA n 1 186 ALA n 1 187 PHE n 1 188 LEU n 1 189 PHE n 1 190 VAL n 1 191 LEU n 1 192 ASP n 1 193 VAL n 1 194 MET n 1 195 ILE n 1 196 SER n 1 197 GLY n 1 198 LEU n 1 199 GLU n 1 200 THR n 1 201 VAL n 1 202 LEU n 1 203 ASN n 1 204 ASN n 1 205 HIS n 1 206 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'PROTEUS MIRABILIS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 584 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain RB791 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PWH610K _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code S5UX16_PROMI _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession S5UX16 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4D5C _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 206 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession S5UX16 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 207 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 207 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4D5C _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.2 _exptl_crystal.density_percent_sol 44 _exptl_crystal.description 'MODEL NOT DEPOSITED' # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '1.0 M (NH4)2SO4, 0.07 M NACL, 0.05 M HEPES PH 7.0; CRYO 1.0 M (NH4)2SO4, 0.07 M NACL, 0.05 M HEPES PH 7.0, 10% GLYCEROL' # _diffrn.id 1 _diffrn.ambient_temp 120 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU CCD' _diffrn_detector.pdbx_collection_date 2014-10-02 _diffrn_detector.details MIRROR # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator MIRROR _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4D5C _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.00 _reflns.d_resolution_high 1.70 _reflns.number_obs 21903 _reflns.number_all ? _reflns.percent_possible_obs 95.7 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 29.70 _reflns.B_iso_Wilson_estimate 13.0 _reflns.pdbx_redundancy 8.7 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.70 _reflns_shell.d_res_low 1.75 _reflns_shell.percent_possible_all 71.1 _reflns_shell.Rmerge_I_obs 0.81 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.00 _reflns_shell.pdbx_redundancy 3.3 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4D5C _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 20809 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 53.03 _refine.ls_d_res_high 1.70 _refine.ls_percent_reflns_obs 95.71 _refine.ls_R_factor_obs 0.17486 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.17364 _refine.ls_R_factor_R_free 0.19722 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1094 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.957 _refine.correlation_coeff_Fo_to_Fc_free 0.954 _refine.B_iso_mean 26.203 _refine.aniso_B[1][1] 2.19 _refine.aniso_B[2][2] -4.83 _refine.aniso_B[3][3] 2.64 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES WITH TLS ADDED.' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.109 _refine.pdbx_overall_ESU_R_Free 0.101 _refine.overall_SU_ML 0.087 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 6.154 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1528 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 192 _refine_hist.number_atoms_total 1725 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 53.03 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.014 0.019 ? 1592 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 1519 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.529 1.954 ? 2166 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.857 3.000 ? 3491 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.835 5.000 ? 202 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 43.074 25.750 ? 80 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.535 15.000 ? 279 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 9.978 15.000 ? 6 'X-RAY DIFFRACTION' ? r_chiral_restr 0.088 0.200 ? 250 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.020 ? 1837 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 369 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.324 0.877 ? 787 'X-RAY DIFFRACTION' ? r_mcbond_other 1.300 0.873 ? 786 'X-RAY DIFFRACTION' ? r_mcangle_it 2.140 1.293 ? 984 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 1.715 1.084 ? 805 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.703 _refine_ls_shell.d_res_low 1.748 _refine_ls_shell.number_reflns_R_work 1113 _refine_ls_shell.R_factor_R_work 0.257 _refine_ls_shell.percent_reflns_obs 71.08 _refine_ls_shell.R_factor_R_free 0.329 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 67 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 4D5C _struct.title 'tetracycline repressor class J, apo form' _struct.pdbx_descriptor 'TETRACYCLINE REPRESSOR PROTEIN TETR' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4D5C _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text 'TRANSCRIPTION, INDUCTION, ALLOSTERY' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 4 ? LEU A 24 ? ASP A 5 LEU A 25 1 ? 21 HELX_P HELX_P2 2 THR A 25 ? GLY A 34 ? THR A 26 GLY A 35 1 ? 10 HELX_P HELX_P3 3 GLU A 36 ? TYR A 41 ? GLU A 37 TYR A 42 1 ? 6 HELX_P HELX_P4 4 ASN A 46 ? HIS A 63 ? ASN A 47 HIS A 64 1 ? 18 HELX_P HELX_P5 5 SER A 73 ? MET A 91 ? SER A 74 MET A 92 1 ? 19 HELX_P HELX_P6 6 ASP A 94 ? ALA A 100 ? ASP A 95 ALA A 101 1 ? 7 HELX_P HELX_P7 7 SER A 105 ? ALA A 122 ? SER A 106 ALA A 123 1 ? 18 HELX_P HELX_P8 8 THR A 125 ? SER A 153 ? THR A 126 SER A 154 1 ? 29 HELX_P HELX_P9 9 PRO A 168 ? SER A 180 ? PRO A 169 SER A 181 1 ? 13 HELX_P HELX_P10 10 GLY A 183 ? ASN A 204 ? GLY A 184 ASN A 205 1 ? 22 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 8 _struct_site.details 'BINDING SITE FOR RESIDUE SO4 A 1001' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 THR A 25 ? THR A 26 . ? 1_555 ? 2 AC1 8 ARG A 27 ? ARG A 28 . ? 1_555 ? 3 AC1 8 GLU A 199 ? GLU A 200 . ? 1_655 ? 4 AC1 8 ASN A 203 ? ASN A 204 . ? 1_655 ? 5 AC1 8 HOH C . ? HOH A 2036 . ? 1_555 ? 6 AC1 8 HOH C . ? HOH A 2045 . ? 1_555 ? 7 AC1 8 HOH C . ? HOH A 2194 . ? 1_655 ? 8 AC1 8 HOH C . ? HOH A 2195 . ? 1_655 ? # _database_PDB_matrix.entry_id 4D5C _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4D5C _atom_sites.fract_transf_matrix[1][1] 0.018132 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009429 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014269 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 2 2 ALA ALA A . n A 1 2 LYS 2 3 3 LYS LYS A . n A 1 3 LEU 3 4 4 LEU LEU A . n A 1 4 ASP 4 5 5 ASP ASP A . n A 1 5 LYS 5 6 6 LYS LYS A . n A 1 6 GLU 6 7 7 GLU GLU A . n A 1 7 GLN 7 8 8 GLN GLN A . n A 1 8 VAL 8 9 9 VAL VAL A . n A 1 9 ILE 9 10 10 ILE ILE A . n A 1 10 ASP 10 11 11 ASP ASP A . n A 1 11 ASN 11 12 12 ASN ASN A . n A 1 12 ALA 12 13 13 ALA ALA A . n A 1 13 LEU 13 14 14 LEU LEU A . n A 1 14 ILE 14 15 15 ILE ILE A . n A 1 15 LEU 15 16 16 LEU LEU A . n A 1 16 LEU 16 17 17 LEU LEU A . n A 1 17 ASN 17 18 18 ASN ASN A . n A 1 18 GLU 18 19 19 GLU GLU A . n A 1 19 VAL 19 20 20 VAL VAL A . n A 1 20 GLY 20 21 21 GLY GLY A . n A 1 21 MET 21 22 22 MET MET A . n A 1 22 GLU 22 23 23 GLU GLU A . n A 1 23 GLY 23 24 24 GLY GLY A . n A 1 24 LEU 24 25 25 LEU LEU A . n A 1 25 THR 25 26 26 THR THR A . n A 1 26 THR 26 27 27 THR THR A . n A 1 27 ARG 27 28 28 ARG ARG A . n A 1 28 LYS 28 29 29 LYS LYS A . n A 1 29 LEU 29 30 30 LEU LEU A . n A 1 30 ALA 30 31 31 ALA ALA A . n A 1 31 GLN 31 32 32 GLN GLN A . n A 1 32 LYS 32 33 33 LYS LYS A . n A 1 33 LEU 33 34 34 LEU LEU A . n A 1 34 GLY 34 35 35 GLY GLY A . n A 1 35 VAL 35 36 36 VAL VAL A . n A 1 36 GLU 36 37 37 GLU GLU A . n A 1 37 GLN 37 38 38 GLN GLN A . n A 1 38 PRO 38 39 39 PRO PRO A . n A 1 39 THR 39 40 40 THR THR A . n A 1 40 LEU 40 41 41 LEU LEU A . n A 1 41 TYR 41 42 42 TYR TYR A . n A 1 42 TRP 42 43 43 TRP TRP A . n A 1 43 HIS 43 44 44 HIS HIS A . n A 1 44 VAL 44 45 45 VAL VAL A . n A 1 45 LYS 45 46 46 LYS LYS A . n A 1 46 ASN 46 47 47 ASN ASN A . n A 1 47 LYS 47 48 48 LYS LYS A . n A 1 48 ARG 48 49 49 ARG ARG A . n A 1 49 ALA 49 50 50 ALA ALA A . n A 1 50 LEU 50 51 51 LEU LEU A . n A 1 51 LEU 51 52 52 LEU LEU A . n A 1 52 ASP 52 53 53 ASP ASP A . n A 1 53 ALA 53 54 54 ALA ALA A . n A 1 54 LEU 54 55 55 LEU LEU A . n A 1 55 ALA 55 56 56 ALA ALA A . n A 1 56 GLU 56 57 57 GLU GLU A . n A 1 57 THR 57 58 58 THR THR A . n A 1 58 ILE 58 59 59 ILE ILE A . n A 1 59 LEU 59 60 60 LEU LEU A . n A 1 60 GLN 60 61 61 GLN GLN A . n A 1 61 LYS 61 62 62 LYS LYS A . n A 1 62 HIS 62 63 63 HIS HIS A . n A 1 63 HIS 63 64 64 HIS HIS A . n A 1 64 HIS 64 65 65 HIS HIS A . n A 1 65 HIS 65 66 66 HIS HIS A . n A 1 66 VAL 66 67 67 VAL VAL A . n A 1 67 LEU 67 68 68 LEU LEU A . n A 1 68 PRO 68 69 69 PRO PRO A . n A 1 69 LEU 69 70 70 LEU LEU A . n A 1 70 ALA 70 71 71 ALA ALA A . n A 1 71 ASN 71 72 72 ASN ASN A . n A 1 72 GLU 72 73 73 GLU GLU A . n A 1 73 SER 73 74 74 SER SER A . n A 1 74 TRP 74 75 75 TRP TRP A . n A 1 75 GLN 75 76 76 GLN GLN A . n A 1 76 ASP 76 77 77 ASP ASP A . n A 1 77 PHE 77 78 78 PHE PHE A . n A 1 78 LEU 78 79 79 LEU LEU A . n A 1 79 ARG 79 80 80 ARG ARG A . n A 1 80 ASN 80 81 81 ASN ASN A . n A 1 81 ASN 81 82 82 ASN ASN A . n A 1 82 ALA 82 83 83 ALA ALA A . n A 1 83 LYS 83 84 84 LYS LYS A . n A 1 84 SER 84 85 85 SER SER A . n A 1 85 PHE 85 86 86 PHE PHE A . n A 1 86 ARG 86 87 87 ARG ARG A . n A 1 87 GLN 87 88 88 GLN GLN A . n A 1 88 ALA 88 89 89 ALA ALA A . n A 1 89 LEU 89 90 90 LEU LEU A . n A 1 90 LEU 90 91 91 LEU LEU A . n A 1 91 MET 91 92 92 MET MET A . n A 1 92 TYR 92 93 93 TYR TYR A . n A 1 93 ARG 93 94 94 ARG ARG A . n A 1 94 ASP 94 95 95 ASP ASP A . n A 1 95 GLY 95 96 96 GLY GLY A . n A 1 96 GLY 96 97 97 GLY GLY A . n A 1 97 LYS 97 98 98 LYS LYS A . n A 1 98 ILE 98 99 99 ILE ILE A . n A 1 99 HIS 99 100 100 HIS HIS A . n A 1 100 ALA 100 101 101 ALA ALA A . n A 1 101 GLY 101 102 102 GLY GLY A . n A 1 102 THR 102 103 103 THR THR A . n A 1 103 ARG 103 104 104 ARG ARG A . n A 1 104 PRO 104 105 105 PRO PRO A . n A 1 105 SER 105 106 106 SER SER A . n A 1 106 ALA 106 107 107 ALA ALA A . n A 1 107 ASN 107 108 108 ASN ASN A . n A 1 108 GLN 108 109 109 GLN GLN A . n A 1 109 PHE 109 110 110 PHE PHE A . n A 1 110 GLU 110 111 111 GLU GLU A . n A 1 111 THR 111 112 112 THR THR A . n A 1 112 SER 112 113 113 SER SER A . n A 1 113 GLU 113 114 114 GLU GLU A . n A 1 114 GLN 114 115 115 GLN GLN A . n A 1 115 GLN 115 116 116 GLN GLN A . n A 1 116 LEU 116 117 117 LEU LEU A . n A 1 117 GLN 117 118 118 GLN GLN A . n A 1 118 PHE 118 119 119 PHE PHE A . n A 1 119 LEU 119 120 120 LEU LEU A . n A 1 120 CYS 120 121 121 CYS CYS A . n A 1 121 ASP 121 122 122 ASP ASP A . n A 1 122 ALA 122 123 123 ALA ALA A . n A 1 123 GLY 123 124 124 GLY GLY A . n A 1 124 PHE 124 125 125 PHE PHE A . n A 1 125 THR 125 126 126 THR THR A . n A 1 126 LEU 126 127 127 LEU LEU A . n A 1 127 THR 127 128 128 THR THR A . n A 1 128 GLN 128 129 129 GLN GLN A . n A 1 129 ALA 129 130 130 ALA ALA A . n A 1 130 VAL 130 131 131 VAL VAL A . n A 1 131 TYR 131 132 132 TYR TYR A . n A 1 132 ALA 132 133 133 ALA ALA A . n A 1 133 LEU 133 134 134 LEU LEU A . n A 1 134 SER 134 135 135 SER SER A . n A 1 135 SER 135 136 136 SER SER A . n A 1 136 ILE 136 137 137 ILE ILE A . n A 1 137 ALA 137 138 138 ALA ALA A . n A 1 138 HIS 138 139 139 HIS HIS A . n A 1 139 PHE 139 140 140 PHE PHE A . n A 1 140 THR 140 141 141 THR THR A . n A 1 141 LEU 141 142 142 LEU LEU A . n A 1 142 GLY 142 143 143 GLY GLY A . n A 1 143 SER 143 144 144 SER SER A . n A 1 144 VAL 144 145 145 VAL VAL A . n A 1 145 LEU 145 146 146 LEU LEU A . n A 1 146 GLU 146 147 147 GLU GLU A . n A 1 147 THR 147 148 148 THR THR A . n A 1 148 GLN 148 149 149 GLN GLN A . n A 1 149 GLU 149 150 150 GLU GLU A . n A 1 150 HIS 150 151 151 HIS HIS A . n A 1 151 GLN 151 152 152 GLN GLN A . n A 1 152 GLU 152 153 153 GLU GLU A . n A 1 153 SER 153 154 154 SER SER A . n A 1 154 GLN 154 155 155 GLN GLN A . n A 1 155 LYS 155 156 ? ? ? A . n A 1 156 GLU 156 157 ? ? ? A . n A 1 157 ARG 157 158 ? ? ? A . n A 1 158 GLU 158 159 ? ? ? A . n A 1 159 LYS 159 160 ? ? ? A . n A 1 160 VAL 160 161 ? ? ? A . n A 1 161 PRO 161 162 ? ? ? A . n A 1 162 LYS 162 163 ? ? ? A . n A 1 163 THR 163 164 ? ? ? A . n A 1 164 GLU 164 165 ? ? ? A . n A 1 165 ILE 165 166 166 ILE ILE A . n A 1 166 ASN 166 167 167 ASN ASN A . n A 1 167 TYR 167 168 168 TYR TYR A . n A 1 168 PRO 168 169 169 PRO PRO A . n A 1 169 PRO 169 170 170 PRO PRO A . n A 1 170 LEU 170 171 171 LEU LEU A . n A 1 171 LEU 171 172 172 LEU LEU A . n A 1 172 THR 172 173 173 THR THR A . n A 1 173 GLN 173 174 174 GLN GLN A . n A 1 174 ALA 174 175 175 ALA ALA A . n A 1 175 ILE 175 176 176 ILE ILE A . n A 1 176 ASP 176 177 177 ASP ASP A . n A 1 177 ILE 177 178 178 ILE ILE A . n A 1 178 MET 178 179 179 MET MET A . n A 1 179 ASP 179 180 180 ASP ASP A . n A 1 180 SER 180 181 181 SER SER A . n A 1 181 ASP 181 182 182 ASP ASP A . n A 1 182 ASN 182 183 183 ASN ASN A . n A 1 183 GLY 183 184 184 GLY GLY A . n A 1 184 GLU 184 185 185 GLU GLU A . n A 1 185 ALA 185 186 186 ALA ALA A . n A 1 186 ALA 186 187 187 ALA ALA A . n A 1 187 PHE 187 188 188 PHE PHE A . n A 1 188 LEU 188 189 189 LEU LEU A . n A 1 189 PHE 189 190 190 PHE PHE A . n A 1 190 VAL 190 191 191 VAL VAL A . n A 1 191 LEU 191 192 192 LEU LEU A . n A 1 192 ASP 192 193 193 ASP ASP A . n A 1 193 VAL 193 194 194 VAL VAL A . n A 1 194 MET 194 195 195 MET MET A . n A 1 195 ILE 195 196 196 ILE ILE A . n A 1 196 SER 196 197 197 SER SER A . n A 1 197 GLY 197 198 198 GLY GLY A . n A 1 198 LEU 198 199 199 LEU LEU A . n A 1 199 GLU 199 200 200 GLU GLU A . n A 1 200 THR 200 201 201 THR THR A . n A 1 201 VAL 201 202 202 VAL VAL A . n A 1 202 LEU 202 203 203 LEU LEU A . n A 1 203 ASN 203 204 204 ASN ASN A . n A 1 204 ASN 204 205 205 ASN ASN A . n A 1 205 HIS 205 206 ? ? ? A . n A 1 206 HIS 206 207 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 1001 1001 SO4 SO4 A . C 3 HOH 1 2001 2001 HOH HOH A . C 3 HOH 2 2002 2002 HOH HOH A . C 3 HOH 3 2003 2003 HOH HOH A . C 3 HOH 4 2004 2004 HOH HOH A . C 3 HOH 5 2005 2005 HOH HOH A . C 3 HOH 6 2006 2006 HOH HOH A . C 3 HOH 7 2007 2007 HOH HOH A . C 3 HOH 8 2008 2008 HOH HOH A . C 3 HOH 9 2009 2009 HOH HOH A . C 3 HOH 10 2010 2010 HOH HOH A . C 3 HOH 11 2011 2011 HOH HOH A . C 3 HOH 12 2012 2012 HOH HOH A . C 3 HOH 13 2013 2013 HOH HOH A . C 3 HOH 14 2014 2014 HOH HOH A . C 3 HOH 15 2015 2015 HOH HOH A . C 3 HOH 16 2016 2016 HOH HOH A . C 3 HOH 17 2017 2017 HOH HOH A . C 3 HOH 18 2018 2018 HOH HOH A . C 3 HOH 19 2019 2019 HOH HOH A . C 3 HOH 20 2020 2020 HOH HOH A . C 3 HOH 21 2021 2021 HOH HOH A . C 3 HOH 22 2022 2022 HOH HOH A . C 3 HOH 23 2023 2023 HOH HOH A . C 3 HOH 24 2024 2024 HOH HOH A . C 3 HOH 25 2025 2025 HOH HOH A . C 3 HOH 26 2026 2026 HOH HOH A . C 3 HOH 27 2027 2027 HOH HOH A . C 3 HOH 28 2028 2028 HOH HOH A . C 3 HOH 29 2029 2029 HOH HOH A . C 3 HOH 30 2030 2030 HOH HOH A . C 3 HOH 31 2031 2031 HOH HOH A . C 3 HOH 32 2032 2032 HOH HOH A . C 3 HOH 33 2033 2033 HOH HOH A . C 3 HOH 34 2034 2034 HOH HOH A . C 3 HOH 35 2035 2035 HOH HOH A . C 3 HOH 36 2036 2036 HOH HOH A . C 3 HOH 37 2037 2037 HOH HOH A . C 3 HOH 38 2038 2038 HOH HOH A . C 3 HOH 39 2039 2039 HOH HOH A . C 3 HOH 40 2040 2040 HOH HOH A . C 3 HOH 41 2041 2041 HOH HOH A . C 3 HOH 42 2042 2042 HOH HOH A . C 3 HOH 43 2043 2043 HOH HOH A . C 3 HOH 44 2044 2044 HOH HOH A . C 3 HOH 45 2045 2045 HOH HOH A . C 3 HOH 46 2046 2046 HOH HOH A . C 3 HOH 47 2047 2047 HOH HOH A . C 3 HOH 48 2048 2048 HOH HOH A . C 3 HOH 49 2049 2049 HOH HOH A . C 3 HOH 50 2050 2050 HOH HOH A . C 3 HOH 51 2051 2051 HOH HOH A . C 3 HOH 52 2052 2052 HOH HOH A . C 3 HOH 53 2053 2053 HOH HOH A . C 3 HOH 54 2054 2054 HOH HOH A . C 3 HOH 55 2055 2055 HOH HOH A . C 3 HOH 56 2056 2056 HOH HOH A . C 3 HOH 57 2057 2057 HOH HOH A . C 3 HOH 58 2058 2058 HOH HOH A . C 3 HOH 59 2059 2059 HOH HOH A . C 3 HOH 60 2060 2060 HOH HOH A . C 3 HOH 61 2061 2061 HOH HOH A . C 3 HOH 62 2062 2062 HOH HOH A . C 3 HOH 63 2063 2063 HOH HOH A . C 3 HOH 64 2064 2064 HOH HOH A . C 3 HOH 65 2065 2065 HOH HOH A . C 3 HOH 66 2066 2066 HOH HOH A . C 3 HOH 67 2067 2067 HOH HOH A . C 3 HOH 68 2068 2068 HOH HOH A . C 3 HOH 69 2069 2069 HOH HOH A . C 3 HOH 70 2070 2070 HOH HOH A . C 3 HOH 71 2071 2071 HOH HOH A . C 3 HOH 72 2072 2072 HOH HOH A . C 3 HOH 73 2073 2073 HOH HOH A . C 3 HOH 74 2074 2074 HOH HOH A . C 3 HOH 75 2075 2075 HOH HOH A . C 3 HOH 76 2076 2076 HOH HOH A . C 3 HOH 77 2077 2077 HOH HOH A . C 3 HOH 78 2078 2078 HOH HOH A . C 3 HOH 79 2079 2079 HOH HOH A . C 3 HOH 80 2080 2080 HOH HOH A . C 3 HOH 81 2081 2081 HOH HOH A . C 3 HOH 82 2082 2082 HOH HOH A . C 3 HOH 83 2084 2084 HOH HOH A . C 3 HOH 84 2085 2085 HOH HOH A . C 3 HOH 85 2086 2086 HOH HOH A . C 3 HOH 86 2087 2087 HOH HOH A . C 3 HOH 87 2088 2088 HOH HOH A . C 3 HOH 88 2089 2089 HOH HOH A . C 3 HOH 89 2090 2090 HOH HOH A . C 3 HOH 90 2091 2091 HOH HOH A . C 3 HOH 91 2092 2092 HOH HOH A . C 3 HOH 92 2093 2093 HOH HOH A . C 3 HOH 93 2094 2094 HOH HOH A . C 3 HOH 94 2095 2095 HOH HOH A . C 3 HOH 95 2096 2096 HOH HOH A . C 3 HOH 96 2097 2097 HOH HOH A . C 3 HOH 97 2098 2098 HOH HOH A . C 3 HOH 98 2099 2099 HOH HOH A . C 3 HOH 99 2100 2100 HOH HOH A . C 3 HOH 100 2101 2101 HOH HOH A . C 3 HOH 101 2102 2102 HOH HOH A . C 3 HOH 102 2103 2103 HOH HOH A . C 3 HOH 103 2104 2104 HOH HOH A . C 3 HOH 104 2105 2105 HOH HOH A . C 3 HOH 105 2106 2106 HOH HOH A . C 3 HOH 106 2107 2107 HOH HOH A . C 3 HOH 107 2108 2108 HOH HOH A . C 3 HOH 108 2109 2109 HOH HOH A . C 3 HOH 109 2110 2110 HOH HOH A . C 3 HOH 110 2111 2111 HOH HOH A . C 3 HOH 111 2112 2112 HOH HOH A . C 3 HOH 112 2113 2113 HOH HOH A . C 3 HOH 113 2114 2114 HOH HOH A . C 3 HOH 114 2115 2115 HOH HOH A . C 3 HOH 115 2116 2116 HOH HOH A . C 3 HOH 116 2117 2117 HOH HOH A . C 3 HOH 117 2118 2118 HOH HOH A . C 3 HOH 118 2119 2119 HOH HOH A . C 3 HOH 119 2120 2120 HOH HOH A . C 3 HOH 120 2121 2121 HOH HOH A . C 3 HOH 121 2122 2122 HOH HOH A . C 3 HOH 122 2123 2123 HOH HOH A . C 3 HOH 123 2124 2124 HOH HOH A . C 3 HOH 124 2125 2125 HOH HOH A . C 3 HOH 125 2126 2126 HOH HOH A . C 3 HOH 126 2127 2127 HOH HOH A . C 3 HOH 127 2128 2128 HOH HOH A . C 3 HOH 128 2129 2129 HOH HOH A . C 3 HOH 129 2130 2130 HOH HOH A . C 3 HOH 130 2132 2132 HOH HOH A . C 3 HOH 131 2133 2133 HOH HOH A . C 3 HOH 132 2134 2134 HOH HOH A . C 3 HOH 133 2135 2135 HOH HOH A . C 3 HOH 134 2136 2136 HOH HOH A . C 3 HOH 135 2137 2137 HOH HOH A . C 3 HOH 136 2138 2138 HOH HOH A . C 3 HOH 137 2139 2139 HOH HOH A . C 3 HOH 138 2140 2140 HOH HOH A . C 3 HOH 139 2141 2141 HOH HOH A . C 3 HOH 140 2142 2142 HOH HOH A . C 3 HOH 141 2143 2143 HOH HOH A . C 3 HOH 142 2144 2144 HOH HOH A . C 3 HOH 143 2145 2145 HOH HOH A . C 3 HOH 144 2146 2146 HOH HOH A . C 3 HOH 145 2147 2147 HOH HOH A . C 3 HOH 146 2148 2148 HOH HOH A . C 3 HOH 147 2149 2149 HOH HOH A . C 3 HOH 148 2150 2150 HOH HOH A . C 3 HOH 149 2151 2151 HOH HOH A . C 3 HOH 150 2152 2152 HOH HOH A . C 3 HOH 151 2153 2153 HOH HOH A . C 3 HOH 152 2154 2154 HOH HOH A . C 3 HOH 153 2155 2155 HOH HOH A . C 3 HOH 154 2156 2156 HOH HOH A . C 3 HOH 155 2157 2157 HOH HOH A . C 3 HOH 156 2158 2158 HOH HOH A . C 3 HOH 157 2159 2159 HOH HOH A . C 3 HOH 158 2160 2160 HOH HOH A . C 3 HOH 159 2161 2161 HOH HOH A . C 3 HOH 160 2162 2162 HOH HOH A . C 3 HOH 161 2163 2163 HOH HOH A . C 3 HOH 162 2164 2164 HOH HOH A . C 3 HOH 163 2165 2165 HOH HOH A . C 3 HOH 164 2166 2166 HOH HOH A . C 3 HOH 165 2167 2167 HOH HOH A . C 3 HOH 166 2168 2168 HOH HOH A . C 3 HOH 167 2169 2169 HOH HOH A . C 3 HOH 168 2170 2170 HOH HOH A . C 3 HOH 169 2171 2171 HOH HOH A . C 3 HOH 170 2172 2172 HOH HOH A . C 3 HOH 171 2173 2173 HOH HOH A . C 3 HOH 172 2174 2174 HOH HOH A . C 3 HOH 173 2175 2175 HOH HOH A . C 3 HOH 174 2176 2176 HOH HOH A . C 3 HOH 175 2177 2177 HOH HOH A . C 3 HOH 176 2178 2178 HOH HOH A . C 3 HOH 177 2179 2179 HOH HOH A . C 3 HOH 178 2180 2180 HOH HOH A . C 3 HOH 179 2181 2181 HOH HOH A . C 3 HOH 180 2182 2182 HOH HOH A . C 3 HOH 181 2183 2183 HOH HOH A . C 3 HOH 182 2184 2184 HOH HOH A . C 3 HOH 183 2185 2185 HOH HOH A . C 3 HOH 184 2187 2187 HOH HOH A . C 3 HOH 185 2188 2188 HOH HOH A . C 3 HOH 186 2189 2189 HOH HOH A . C 3 HOH 187 2190 2190 HOH HOH A . C 3 HOH 188 2191 2191 HOH HOH A . C 3 HOH 189 2192 2192 HOH HOH A . C 3 HOH 190 2193 2193 HOH HOH A . C 3 HOH 191 2194 2194 HOH HOH A . C 3 HOH 192 2195 2195 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5380 ? 1 MORE -64.8 ? 1 'SSA (A^2)' 17750 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_555 x,-y,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 2034 ? C HOH . 2 1 A HOH 2092 ? C HOH . 3 1 A HOH 2187 ? C HOH . # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2016-01-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 38.6480 13.7180 -8.3040 0.0018 0.4466 0.0341 0.0096 0.0062 -0.0052 3.0057 0.2905 0.0520 0.1678 0.1386 -0.0898 -0.0178 -0.1365 0.0214 -0.0059 -0.0028 -0.0543 -0.0005 -0.0174 0.0206 'X-RAY DIFFRACTION' 2 ? refined 22.9960 7.5120 -7.5380 0.0062 0.3731 0.0207 -0.0017 0.0030 0.0153 3.3870 1.4045 0.5013 0.1558 -0.4357 -0.0269 0.0388 -0.0845 -0.0535 -0.0083 -0.0662 -0.1211 0.0448 0.0302 0.0274 'X-RAY DIFFRACTION' 3 ? refined 16.7870 1.7000 -3.8580 0.0150 0.4328 0.0127 0.0169 0.0129 0.0192 1.1975 2.9217 0.6151 -0.4865 -0.2172 0.1415 -0.0272 -0.0688 -0.0073 -0.1535 -0.0076 -0.1168 0.0384 0.0735 0.0348 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 1 ? ? A 74 ? ? ? ? 'X-RAY DIFFRACTION' 2 1 A 1001 ? ? A 1001 ? ? ? ? 'X-RAY DIFFRACTION' 3 2 A 75 ? ? A 107 ? ? ? ? 'X-RAY DIFFRACTION' 4 3 A 108 ? ? A 208 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.8.0073 ? 1 XDS 'data reduction' . ? 2 XDS 'data scaling' . ? 3 PHASER phasing . ? 4 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 2116 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 2118 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.10 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 80 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 80 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH1 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 80 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 123.44 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation 3.14 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 72 ? ? 66.51 -2.09 2 1 SER A 154 ? ? -56.87 92.36 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 3 ? CG ? A LYS 2 CG 2 1 Y 1 A LYS 3 ? CD ? A LYS 2 CD 3 1 Y 1 A LYS 3 ? CE ? A LYS 2 CE 4 1 Y 1 A LYS 3 ? NZ ? A LYS 2 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LYS 156 ? A LYS 155 2 1 Y 1 A GLU 157 ? A GLU 156 3 1 Y 1 A ARG 158 ? A ARG 157 4 1 Y 1 A GLU 159 ? A GLU 158 5 1 Y 1 A LYS 160 ? A LYS 159 6 1 Y 1 A VAL 161 ? A VAL 160 7 1 Y 1 A PRO 162 ? A PRO 161 8 1 Y 1 A LYS 163 ? A LYS 162 9 1 Y 1 A THR 164 ? A THR 163 10 1 Y 1 A GLU 165 ? A GLU 164 11 1 Y 1 A HIS 206 ? A HIS 205 12 1 Y 1 A HIS 207 ? A HIS 206 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH #