HEADER TRANSCRIPTION 03-NOV-14 4D5C TITLE TETRACYCLINE REPRESSOR CLASS J, APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: TETRACYCLINE REPRESSOR PROTEIN TETR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TETRACYCLINE REPRESSOR CLASS J; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PROTEUS MIRABILIS; SOURCE 3 ORGANISM_TAXID: 584; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: RB791; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PWH610K KEYWDS TRANSCRIPTION, INDUCTION, ALLOSTERY EXPDTA X-RAY DIFFRACTION AUTHOR G.J.PALM,J.QUAST,W.HINRICHS REVDAT 1 20-JAN-16 4D5C 0 JRNL AUTH G.J.PALM,J.QUAST,W.HINRICHS JRNL TITL DOMAIN MOVEMENT IN TETRACYCLINE REPRESSOR CLASSES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU, REMARK 3 STEINER,NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 95.71 REMARK 3 NUMBER OF REFLECTIONS : 20809 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.17486 REMARK 3 R VALUE (WORKING SET) : 0.17364 REMARK 3 FREE R VALUE : 0.19722 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 1094 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.703 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.748 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1113 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 71.08 REMARK 3 BIN R VALUE (WORKING SET) : 0.257 REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.329 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1556 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 192 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.0 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.203 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.19 REMARK 3 B22 (A**2) : -4.83 REMARK 3 B33 (A**2) : 2.64 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.109 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.101 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.087 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.154 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1592 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1519 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2166 ; 1.529 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3491 ; 0.857 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 202 ; 4.835 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 80 ;43.074 ;25.750 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 279 ;14.535 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ; 9.978 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 250 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1837 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 369 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 787 ; 1.324 ; 0.877 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 786 ; 1.300 ; 0.873 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 984 ; 2.140 ; 1.293 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 805 ; 1.715 ; 1.084 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 74 REMARK 3 RESIDUE RANGE : A 1001 A 1001 REMARK 3 ORIGIN FOR THE GROUP (A): 38.6480 13.7180 -8.3040 REMARK 3 T TENSOR REMARK 3 T11: 0.0018 T22: 0.4466 REMARK 3 T33: 0.0341 T12: 0.0096 REMARK 3 T13: 0.0062 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 3.0057 L22: 0.2905 REMARK 3 L33: 0.0520 L12: 0.1678 REMARK 3 L13: 0.1386 L23: -0.0898 REMARK 3 S TENSOR REMARK 3 S11: -0.0178 S12: -0.1365 S13: 0.0214 REMARK 3 S21: -0.0059 S22: -0.0028 S23: -0.0543 REMARK 3 S31: -0.0005 S32: -0.0174 S33: 0.0206 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 75 A 107 REMARK 3 ORIGIN FOR THE GROUP (A): 22.9960 7.5120 -7.5380 REMARK 3 T TENSOR REMARK 3 T11: 0.0062 T22: 0.3731 REMARK 3 T33: 0.0207 T12: -0.0017 REMARK 3 T13: 0.0030 T23: 0.0153 REMARK 3 L TENSOR REMARK 3 L11: 3.3870 L22: 1.4045 REMARK 3 L33: 0.5013 L12: 0.1558 REMARK 3 L13: -0.4357 L23: -0.0269 REMARK 3 S TENSOR REMARK 3 S11: 0.0388 S12: -0.0845 S13: -0.0535 REMARK 3 S21: -0.0083 S22: -0.0662 S23: -0.1211 REMARK 3 S31: 0.0448 S32: 0.0302 S33: 0.0274 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 108 A 208 REMARK 3 ORIGIN FOR THE GROUP (A): 16.7870 1.7000 -3.8580 REMARK 3 T TENSOR REMARK 3 T11: 0.0150 T22: 0.4328 REMARK 3 T33: 0.0127 T12: 0.0169 REMARK 3 T13: 0.0129 T23: 0.0192 REMARK 3 L TENSOR REMARK 3 L11: 1.1975 L22: 2.9217 REMARK 3 L33: 0.6151 L12: -0.4865 REMARK 3 L13: -0.2172 L23: 0.1415 REMARK 3 S TENSOR REMARK 3 S11: -0.0272 S12: -0.0688 S13: -0.0073 REMARK 3 S21: -0.1535 S22: -0.0076 S23: -0.1168 REMARK 3 S31: 0.0384 S32: 0.0735 S33: 0.0348 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. U VALUES WITH TLS ADDED. REMARK 4 REMARK 4 4D5C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-NOV-14. REMARK 100 THE PDBE ID CODE IS EBI-62153. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRROR REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21903 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.70 REMARK 200 RESOLUTION RANGE LOW (A) : 50.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 8.7 REMARK 200 R MERGE (I) : 0.06 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.70 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.3 REMARK 200 R MERGE FOR SHELL (I) : 0.81 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: MODEL NOT DEPOSITED REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.2 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 M (NH4)2SO4, 0.07 M NACL, REMARK 280 0.05 M HEPES PH 7.0; CRYO 1.0 M (NH4)2SO4, 0.07 M NACL, REMARK 280 0.05 M HEPES PH 7.0, 10% GLYCEROL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.04000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 35.04000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 27.57500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.03000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 27.57500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.03000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 35.04000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 27.57500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.03000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 35.04000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 27.57500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 53.03000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2034 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2092 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2187 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 156 REMARK 465 GLU A 157 REMARK 465 ARG A 158 REMARK 465 GLU A 159 REMARK 465 LYS A 160 REMARK 465 VAL A 161 REMARK 465 PRO A 162 REMARK 465 LYS A 163 REMARK 465 THR A 164 REMARK 465 GLU A 165 REMARK 465 HIS A 206 REMARK 465 HIS A 207 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1A GLU A 19 O HOH A 2027 1.13 REMARK 500 O HOH A 2116 O HOH A 2118 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 80 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 72 -2.09 66.51 REMARK 500 SER A 154 92.36 -56.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4D5F RELATED DB: PDB REMARK 900 TETRACYCLINE REPRESSOR CLASS H, APO FORM DBREF 4D5C A 2 207 UNP S5UX16 S5UX16_PROMI 2 207 SEQRES 1 A 206 ALA LYS LEU ASP LYS GLU GLN VAL ILE ASP ASN ALA LEU SEQRES 2 A 206 ILE LEU LEU ASN GLU VAL GLY MET GLU GLY LEU THR THR SEQRES 3 A 206 ARG LYS LEU ALA GLN LYS LEU GLY VAL GLU GLN PRO THR SEQRES 4 A 206 LEU TYR TRP HIS VAL LYS ASN LYS ARG ALA LEU LEU ASP SEQRES 5 A 206 ALA LEU ALA GLU THR ILE LEU GLN LYS HIS HIS HIS HIS SEQRES 6 A 206 VAL LEU PRO LEU ALA ASN GLU SER TRP GLN ASP PHE LEU SEQRES 7 A 206 ARG ASN ASN ALA LYS SER PHE ARG GLN ALA LEU LEU MET SEQRES 8 A 206 TYR ARG ASP GLY GLY LYS ILE HIS ALA GLY THR ARG PRO SEQRES 9 A 206 SER ALA ASN GLN PHE GLU THR SER GLU GLN GLN LEU GLN SEQRES 10 A 206 PHE LEU CYS ASP ALA GLY PHE THR LEU THR GLN ALA VAL SEQRES 11 A 206 TYR ALA LEU SER SER ILE ALA HIS PHE THR LEU GLY SER SEQRES 12 A 206 VAL LEU GLU THR GLN GLU HIS GLN GLU SER GLN LYS GLU SEQRES 13 A 206 ARG GLU LYS VAL PRO LYS THR GLU ILE ASN TYR PRO PRO SEQRES 14 A 206 LEU LEU THR GLN ALA ILE ASP ILE MET ASP SER ASP ASN SEQRES 15 A 206 GLY GLU ALA ALA PHE LEU PHE VAL LEU ASP VAL MET ILE SEQRES 16 A 206 SER GLY LEU GLU THR VAL LEU ASN ASN HIS HIS HET SO4 A1001 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 O4 S 2- FORMUL 3 HOH *192(H2 O) HELIX 1 1 ASP A 5 LEU A 25 1 21 HELIX 2 2 THR A 26 GLY A 35 1 10 HELIX 3 3 GLU A 37 TYR A 42 1 6 HELIX 4 4 ASN A 47 HIS A 64 1 18 HELIX 5 5 SER A 74 MET A 92 1 19 HELIX 6 6 ASP A 95 ALA A 101 1 7 HELIX 7 7 SER A 106 ALA A 123 1 18 HELIX 8 8 THR A 126 SER A 154 1 29 HELIX 9 9 PRO A 169 SER A 181 1 13 HELIX 10 10 GLY A 184 ASN A 205 1 22 SITE 1 AC1 8 THR A 26 ARG A 28 GLU A 200 ASN A 204 SITE 2 AC1 8 HOH A2036 HOH A2045 HOH A2194 HOH A2195 CRYST1 55.150 106.060 70.080 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018132 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009429 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014269 0.00000