HEADER VIRAL PROTEIN 08-NOV-14 4D63 TITLE STRUCTURE OF THE CARBOXY-TERMINAL DOMAIN OF THE TURKEY TYPE 3 TITLE 2 SIADENOVIRUS FIBRE, AVIRULENT FORM COMPLEXED WITH 6-SIALYLLACTOSE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBER KNOB DOMAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HEAD DOMAIN, RESIDUES 15-165; COMPND 5 SYNONYM: TURKEY ADENOVIRUS TYPE 3 FIBRE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AVIRULENT TURKEY HEMORRHAGIC ENTERITIS VIRUS; SOURCE 3 ORGANISM_TAXID: 318490; SOURCE 4 VARIANT: AVIRULENT FORM; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 10 OTHER_DETAILS: ARKO LABORATORIES, JEWELL IA, USA KEYWDS VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.K.SINGH,M.J.VAN RAAIJ REVDAT 3 29-JUL-20 4D63 1 COMPND REMARK HETNAM SITE REVDAT 2 17-JAN-18 4D63 1 JRNL REVDAT 1 14-OCT-15 4D63 0 JRNL AUTH A.K.SINGH,M.A.BERBIS,M.Z.BALLMANN,M.KILCOYNE,M.MENENDEZ, JRNL AUTH 2 T.H.NGUYEN,L.JOSHI,F.J.CANADA,J.JIMENEZ-BARBERO,M.BENKO, JRNL AUTH 3 B.HARRACH,M.J.VAN RAAIJ JRNL TITL STRUCTURE AND SIALYLLACTOSE BINDING OF THE CARBOXY-TERMINAL JRNL TITL 2 HEAD DOMAIN OF THE FIBRE FROM A SIADENOVIRUS, TURKEY JRNL TITL 3 ADENOVIRUS 3. JRNL REF PLOS ONE V. 10 39339 2015 JRNL REFN ESSN 1932-6203 JRNL PMID 26418008 JRNL DOI 10.1371/JOURNAL.PONE.0139339 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 7836 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : THIN SHELLS REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 383 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.32 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1121 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2250 REMARK 3 BIN FREE R VALUE SET COUNT : 56 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1092 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 60 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.242 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.186 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.153 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.245 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1134 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1139 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1540 ; 1.643 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2612 ; 0.756 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 137 ; 7.753 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 46 ;40.478 ;24.130 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 202 ;15.404 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;20.577 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 184 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1253 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 257 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 184 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1065 ; 0.180 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 538 ; 0.171 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 661 ; 0.081 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 24 ; 0.165 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 2 ; 0.062 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 22 ; 0.228 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 65 ; 0.173 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.037 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 551 ; 3.260 ; 4.424 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 550 ; 3.262 ; 4.413 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 687 ; 5.010 ; 6.602 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 583 ; 3.932 ; 5.050 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 853 ; 6.410 ; 7.370 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 4D63 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1290062265. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR, SI REMARK 200 (111), SI(311) REMARK 200 OPTICS : TWO CYLINDRICAL VERTICAL REMARK 200 FOCUSING PARABOLIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7836 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.60 REMARK 200 R MERGE FOR SHELL (I) : 0.58000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25MM MORPHOLINO-ETHANESULFONIC ACID, REMARK 280 0.5-1.0 M DIAMMONIUM PHOSPHATE, 0.1M SODIUM CITRATE PH 5.5-5.8, REMARK 280 0.2-0.3M SODIUM CHLORIDE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 49.23000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 49.23000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 49.23000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 49.23000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 49.23000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 49.23000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 49.23000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 49.23000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 49.23000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 49.23000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 49.23000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 49.23000 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 49.23000 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 49.23000 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 49.23000 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 49.23000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 49.23000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 49.23000 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 49.23000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 49.23000 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 49.23000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 49.23000 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 49.23000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 49.23000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 49.23000 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 49.23000 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 49.23000 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 49.23000 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 49.23000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 49.23000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 49.23000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 49.23000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 49.23000 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 49.23000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 49.23000 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 49.23000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 1.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2059 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 268 REMARK 465 GLY A 269 REMARK 465 SER A 270 REMARK 465 SER A 271 REMARK 465 HIS A 272 REMARK 465 HIS A 273 REMARK 465 HIS A 274 REMARK 465 HIS A 275 REMARK 465 HIS A 276 REMARK 465 HIS A 277 REMARK 465 SER A 278 REMARK 465 SER A 279 REMARK 465 GLY A 280 REMARK 465 LEU A 281 REMARK 465 VAL A 282 REMARK 465 PRO A 283 REMARK 465 ARG A 284 REMARK 465 GLY A 285 REMARK 465 SER A 286 REMARK 465 HIS A 287 REMARK 465 MET A 288 REMARK 465 ALA A 289 REMARK 465 SER A 290 REMARK 465 MET A 291 REMARK 465 THR A 292 REMARK 465 GLY A 293 REMARK 465 GLY A 294 REMARK 465 GLN A 295 REMARK 465 GLN A 296 REMARK 465 MET A 297 REMARK 465 GLY A 298 REMARK 465 ARG A 299 REMARK 465 GLY A 300 REMARK 465 SER A 301 REMARK 465 GLU A 302 REMARK 465 PHE A 303 REMARK 465 GLY A 304 REMARK 465 PRO A 305 REMARK 465 PRO A 306 REMARK 465 THR A 307 REMARK 465 THR A 308 REMARK 465 MET A 309 REMARK 465 VAL A 310 REMARK 465 THR A 311 REMARK 465 GLY A 312 REMARK 465 THR A 313 REMARK 465 VAL A 314 REMARK 465 SER A 315 REMARK 465 PRO A 316 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 339 -159.79 -99.24 REMARK 500 ASP A 340 -90.83 -42.89 REMARK 500 ASN A 407 -1.17 64.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4D62 RELATED DB: PDB REMARK 900 STRUCTURE OF THE CARBOXY-TERMINAL DOMAIN OF THE TURKEY TYPE 3 REMARK 900 SIADENOVIRUS FIBRE, AVIRULENT FORM COMPLEXED WITH 3-SIALYLLACTOSE. DBREF 4D63 A 304 454 UNP Q2TLC1 Q2TLC1_9ADEN 304 454 SEQADV 4D63 MET A 268 UNP Q2TLC1 EXPRESSION TAG SEQADV 4D63 GLY A 269 UNP Q2TLC1 EXPRESSION TAG SEQADV 4D63 SER A 270 UNP Q2TLC1 EXPRESSION TAG SEQADV 4D63 SER A 271 UNP Q2TLC1 EXPRESSION TAG SEQADV 4D63 HIS A 272 UNP Q2TLC1 EXPRESSION TAG SEQADV 4D63 HIS A 273 UNP Q2TLC1 EXPRESSION TAG SEQADV 4D63 HIS A 274 UNP Q2TLC1 EXPRESSION TAG SEQADV 4D63 HIS A 275 UNP Q2TLC1 EXPRESSION TAG SEQADV 4D63 HIS A 276 UNP Q2TLC1 EXPRESSION TAG SEQADV 4D63 HIS A 277 UNP Q2TLC1 EXPRESSION TAG SEQADV 4D63 SER A 278 UNP Q2TLC1 EXPRESSION TAG SEQADV 4D63 SER A 279 UNP Q2TLC1 EXPRESSION TAG SEQADV 4D63 GLY A 280 UNP Q2TLC1 EXPRESSION TAG SEQADV 4D63 LEU A 281 UNP Q2TLC1 EXPRESSION TAG SEQADV 4D63 VAL A 282 UNP Q2TLC1 EXPRESSION TAG SEQADV 4D63 PRO A 283 UNP Q2TLC1 EXPRESSION TAG SEQADV 4D63 ARG A 284 UNP Q2TLC1 EXPRESSION TAG SEQADV 4D63 GLY A 285 UNP Q2TLC1 EXPRESSION TAG SEQADV 4D63 SER A 286 UNP Q2TLC1 EXPRESSION TAG SEQADV 4D63 HIS A 287 UNP Q2TLC1 EXPRESSION TAG SEQADV 4D63 MET A 288 UNP Q2TLC1 EXPRESSION TAG SEQADV 4D63 ALA A 289 UNP Q2TLC1 EXPRESSION TAG SEQADV 4D63 SER A 290 UNP Q2TLC1 EXPRESSION TAG SEQADV 4D63 MET A 291 UNP Q2TLC1 EXPRESSION TAG SEQADV 4D63 THR A 292 UNP Q2TLC1 EXPRESSION TAG SEQADV 4D63 GLY A 293 UNP Q2TLC1 EXPRESSION TAG SEQADV 4D63 GLY A 294 UNP Q2TLC1 EXPRESSION TAG SEQADV 4D63 GLN A 295 UNP Q2TLC1 EXPRESSION TAG SEQADV 4D63 GLN A 296 UNP Q2TLC1 EXPRESSION TAG SEQADV 4D63 MET A 297 UNP Q2TLC1 EXPRESSION TAG SEQADV 4D63 GLY A 298 UNP Q2TLC1 EXPRESSION TAG SEQADV 4D63 ARG A 299 UNP Q2TLC1 EXPRESSION TAG SEQADV 4D63 GLY A 300 UNP Q2TLC1 EXPRESSION TAG SEQADV 4D63 SER A 301 UNP Q2TLC1 EXPRESSION TAG SEQADV 4D63 GLU A 302 UNP Q2TLC1 EXPRESSION TAG SEQADV 4D63 PHE A 303 UNP Q2TLC1 EXPRESSION TAG SEQRES 1 A 187 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 187 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 A 187 GLY GLN GLN MET GLY ARG GLY SER GLU PHE GLY PRO PRO SEQRES 4 A 187 THR THR MET VAL THR GLY THR VAL SER PRO GLY ARG ALA SEQRES 5 A 187 THR ASN GLY GLN PHE VAL THR LYS THR ALA LYS VAL LEU SEQRES 6 A 187 ARG TYR LYS PHE VAL ARG TRP ASP ALA LEU LEU ILE ILE SEQRES 7 A 187 GLN PHE ILE ASP ASN ILE GLY VAL MET GLU ASN PRO THR SEQRES 8 A 187 PHE TYR ARG ASN LYS SER ILE GLU LEU ARG SER ALA ASP SEQRES 9 A 187 PHE LEU SER PRO MET LEU ASN ASN THR TYR ILE VAL PRO SEQRES 10 A 187 LEU ASN GLY GLY VAL ARG VAL GLU SER PRO THR ILE PRO SEQRES 11 A 187 VAL GLN LEU GLU VAL ILE LEU GLU ASN ASN SER SER PHE SEQRES 12 A 187 ILE GLN VAL GLY PHE VAL ARG LEU THR VAL LYS ASN GLY SEQRES 13 A 187 ASN PRO HIS MET ILE ILE GLN CYS ASN PRO VAL PRO GLY SEQRES 14 A 187 ASN ILE LYS MET ILE LYS ILE LYS SER VAL MET LEU PHE SEQRES 15 A 187 THR CYS LEU ILE GLY HET SIA A1455 21 HETNAM SIA N-ACETYL-ALPHA-NEURAMINIC ACID FORMUL 2 SIA C11 H19 N O9 FORMUL 3 HOH *60(H2 O) HELIX 1 1 ALA A 370 PHE A 372 5 3 SHEET 1 AA10 ILE A 365 ARG A 368 0 SHEET 2 AA10 ILE A 438 ILE A 443 -1 O ILE A 441 N LEU A 367 SHEET 3 AA10 ILE A 396 LEU A 404 -1 O GLU A 401 N LYS A 442 SHEET 4 AA10 SER A 409 LYS A 421 -1 O PHE A 410 N VAL A 402 SHEET 5 AA10 ASN A 424 GLN A 430 -1 O ASN A 424 N LYS A 421 SHEET 6 AA10 THR A 380 GLY A 387 -1 O TYR A 381 N ILE A 429 SHEET 7 AA10 THR A 320 THR A 326 -1 O VAL A 325 N ASN A 386 SHEET 8 AA10 VAL A 331 ARG A 338 -1 O LEU A 332 N PHE A 324 SHEET 9 AA10 LEU A 342 PHE A 347 -1 O ILE A 344 N VAL A 337 SHEET 10 AA10 LEU A 448 LEU A 452 -1 O PHE A 449 N ILE A 345 SHEET 1 AB 2 VAL A 353 MET A 354 0 SHEET 2 AB 2 TYR A 360 ARG A 361 -1 O ARG A 361 N VAL A 353 CISPEP 1 SER A 374 PRO A 375 0 5.90 CRYST1 98.460 98.460 98.460 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010156 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010156 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010156 0.00000