HEADER TRANSCRIPTION 11-NOV-14 4D6K TITLE STRUCTURE OF DNTTIP1 DIMERISATION DOMAIN. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEOXYNUCLEOTIDYLTRANSFERASE TERMINAL-INTERACTING PROTEIN 1; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 FRAGMENT: DIMERISATION DOMAIN; COMPND 5 SYNONYM: TERMINAL DEOXYNUCLEOTIDYLTRANSFERASE-INTERACTING FACTOR 1, COMPND 6 TDIF1, TDT-INTERACTING FACTOR 1, DNTTIP1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET30A KEYWDS TRANSCRIPTION, HDAC1, MIDEAS, HISTONE DEACETYLASE COMPLEX, TDIF1 EXPDTA X-RAY DIFFRACTION AUTHOR T.ITOH,L.FAIRALL,J.W.R.SCHWABE REVDAT 3 16-OCT-19 4D6K 1 REMARK REVDAT 2 18-MAR-15 4D6K 1 JRNL REVDAT 1 18-FEB-15 4D6K 0 JRNL AUTH T.ITOH,L.FAIRALL,F.W.MUSKETT,C.P.MILANO,P.J.WATSON, JRNL AUTH 2 N.ARNAUDO,A.SALEH,C.J.MILLARD,M.EL-MEZGUELDI,F.MARTINO, JRNL AUTH 3 J.W.R.SCHWABE JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF A CELL CYCLE JRNL TITL 2 ASSOCIATED HDAC1/2 COMPLEX REVEALS THE STRUCTURAL BASIS FOR JRNL TITL 3 COMPLEX ASSEMBLY AND NUCLEOSOME TARGETING. JRNL REF NUCLEIC ACIDS RES. V. 43 2033 2015 JRNL REFN ISSN 0305-1048 JRNL PMID 25653165 JRNL DOI 10.1093/NAR/GKV068 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 34537 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1818 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2285 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.11 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 101 REMARK 3 BIN FREE R VALUE : 0.2660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3312 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 129 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.26000 REMARK 3 B22 (A**2) : 1.86000 REMARK 3 B33 (A**2) : -2.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.173 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.153 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.712 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3421 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3350 ; 0.010 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4616 ; 1.699 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7717 ; 1.730 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 432 ; 5.426 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 177 ;37.233 ;25.876 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 660 ;15.779 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;24.617 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 530 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3931 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 766 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1692 ; 3.343 ; 3.316 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1691 ; 3.332 ; 3.315 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2112 ; 4.733 ; 4.920 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1729 ; 4.613 ; 3.811 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4D6K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1290062273. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34537 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 74.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.400 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.29100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM ACETATE PH 4.6 14% REMARK 280 PROPAN-2-OL, VAPOR DIFFUSION, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.45500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.46550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.52550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.46550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.45500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.52550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 56 REMARK 465 THR A 57 REMARK 465 THR A 58 REMARK 465 SER A 59 REMARK 465 PHE A 60 REMARK 465 THR A 61 REMARK 465 GLY A 132 REMARK 465 GLU A 133 REMARK 465 LYS A 134 REMARK 465 VAL A 135 REMARK 465 ILE A 136 REMARK 465 PRO A 137 REMARK 465 ARG A 138 REMARK 465 LEU A 139 REMARK 465 THR A 140 REMARK 465 HIS A 141 REMARK 465 MET B 56 REMARK 465 THR B 57 REMARK 465 THR B 58 REMARK 465 SER B 59 REMARK 465 PHE B 60 REMARK 465 THR B 61 REMARK 465 ASP B 131 REMARK 465 GLY B 132 REMARK 465 GLU B 133 REMARK 465 LYS B 134 REMARK 465 VAL B 135 REMARK 465 ILE B 136 REMARK 465 PRO B 137 REMARK 465 ARG B 138 REMARK 465 LEU B 139 REMARK 465 THR B 140 REMARK 465 HIS B 141 REMARK 465 GLU B 142 REMARK 465 LEU B 143 REMARK 465 PRO B 144 REMARK 465 GLY B 145 REMARK 465 ILE B 146 REMARK 465 LYS B 147 REMARK 465 MET C 56 REMARK 465 THR C 57 REMARK 465 THR C 58 REMARK 465 SER C 59 REMARK 465 PHE C 60 REMARK 465 THR C 61 REMARK 465 ASP C 62 REMARK 465 PRO C 63 REMARK 465 ASP C 131 REMARK 465 GLY C 132 REMARK 465 GLU C 133 REMARK 465 LYS C 134 REMARK 465 VAL C 135 REMARK 465 ILE C 136 REMARK 465 PRO C 137 REMARK 465 ARG C 138 REMARK 465 LEU C 139 REMARK 465 THR C 140 REMARK 465 HIS C 141 REMARK 465 GLU C 142 REMARK 465 LEU C 143 REMARK 465 PRO C 144 REMARK 465 GLY C 145 REMARK 465 ILE C 146 REMARK 465 LYS C 147 REMARK 465 MET D 56 REMARK 465 THR D 57 REMARK 465 THR D 58 REMARK 465 ASP D 131 REMARK 465 GLY D 132 REMARK 465 GLU D 133 REMARK 465 LYS D 134 REMARK 465 VAL D 135 REMARK 465 ILE D 136 REMARK 465 PRO D 137 REMARK 465 ARG D 138 REMARK 465 LEU D 139 REMARK 465 THR D 140 REMARK 465 HIS D 141 REMARK 465 GLU D 142 REMARK 465 LEU D 143 REMARK 465 PRO D 144 REMARK 465 GLY D 145 REMARK 465 ILE D 146 REMARK 465 LYS D 147 REMARK 465 MET E 56 REMARK 465 THR E 57 REMARK 465 THR E 58 REMARK 465 SER E 59 REMARK 465 PHE E 60 REMARK 465 THR E 61 REMARK 465 GLU E 106 REMARK 465 GLU E 107 REMARK 465 VAL E 108 REMARK 465 GLY E 132 REMARK 465 GLU E 133 REMARK 465 LYS E 134 REMARK 465 VAL E 135 REMARK 465 ILE E 136 REMARK 465 PRO E 137 REMARK 465 ARG E 138 REMARK 465 LEU E 139 REMARK 465 THR E 140 REMARK 465 HIS E 141 REMARK 465 GLU E 142 REMARK 465 LEU E 143 REMARK 465 PRO E 144 REMARK 465 GLY E 145 REMARK 465 ILE E 146 REMARK 465 LYS E 147 REMARK 465 MET F 56 REMARK 465 THR F 57 REMARK 465 THR F 58 REMARK 465 SER F 59 REMARK 465 PHE F 60 REMARK 465 THR F 61 REMARK 465 ASP F 62 REMARK 465 PRO F 63 REMARK 465 ALA F 64 REMARK 465 ILE F 65 REMARK 465 ASP F 131 REMARK 465 GLY F 132 REMARK 465 GLU F 133 REMARK 465 LYS F 134 REMARK 465 VAL F 135 REMARK 465 ILE F 136 REMARK 465 PRO F 137 REMARK 465 ARG F 138 REMARK 465 LEU F 139 REMARK 465 THR F 140 REMARK 465 HIS F 141 REMARK 465 GLU F 142 REMARK 465 LEU F 143 REMARK 465 PRO F 144 REMARK 465 GLY F 145 REMARK 465 ILE F 146 REMARK 465 LYS F 147 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 104 N - CA - C ANGL. DEV. = -17.4 DEGREES REMARK 500 VAL F 108 CB - CA - C ANGL. DEV. = -12.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 104 -162.31 -109.11 REMARK 500 GLU A 107 2.43 -68.38 REMARK 500 GLU B 107 3.03 -69.77 REMARK 500 ILE C 65 -13.69 122.18 REMARK 500 GLU C 107 2.19 -68.69 REMARK 500 ASP D 62 118.29 -37.78 REMARK 500 GLU F 107 85.05 -57.69 REMARK 500 REMARK 500 REMARK: NULL DBREF 4D6K A 56 147 UNP Q9H147 TDIF1_HUMAN 56 147 DBREF 4D6K B 56 147 UNP Q9H147 TDIF1_HUMAN 56 147 DBREF 4D6K C 56 147 UNP Q9H147 TDIF1_HUMAN 56 147 DBREF 4D6K D 56 147 UNP Q9H147 TDIF1_HUMAN 56 147 DBREF 4D6K E 56 147 UNP Q9H147 TDIF1_HUMAN 56 147 DBREF 4D6K F 56 147 UNP Q9H147 TDIF1_HUMAN 56 147 SEQRES 1 A 92 MET THR THR SER PHE THR ASP PRO ALA ILE SER MET ASP SEQRES 2 A 92 LEU LEU ARG ALA VAL LEU GLN PRO SER ILE ASN GLU GLU SEQRES 3 A 92 ILE GLN THR VAL PHE ASN LYS TYR MET LYS PHE PHE GLN SEQRES 4 A 92 LYS ALA ALA LEU ASN VAL ARG ASP ASN VAL GLY GLU GLU SEQRES 5 A 92 VAL ASP ALA GLU GLN LEU ILE GLN GLU ALA CYS ARG SER SEQRES 6 A 92 CYS LEU GLU GLN ALA LYS LEU LEU PHE SER ASP GLY GLU SEQRES 7 A 92 LYS VAL ILE PRO ARG LEU THR HIS GLU LEU PRO GLY ILE SEQRES 8 A 92 LYS SEQRES 1 B 92 MET THR THR SER PHE THR ASP PRO ALA ILE SER MET ASP SEQRES 2 B 92 LEU LEU ARG ALA VAL LEU GLN PRO SER ILE ASN GLU GLU SEQRES 3 B 92 ILE GLN THR VAL PHE ASN LYS TYR MET LYS PHE PHE GLN SEQRES 4 B 92 LYS ALA ALA LEU ASN VAL ARG ASP ASN VAL GLY GLU GLU SEQRES 5 B 92 VAL ASP ALA GLU GLN LEU ILE GLN GLU ALA CYS ARG SER SEQRES 6 B 92 CYS LEU GLU GLN ALA LYS LEU LEU PHE SER ASP GLY GLU SEQRES 7 B 92 LYS VAL ILE PRO ARG LEU THR HIS GLU LEU PRO GLY ILE SEQRES 8 B 92 LYS SEQRES 1 C 92 MET THR THR SER PHE THR ASP PRO ALA ILE SER MET ASP SEQRES 2 C 92 LEU LEU ARG ALA VAL LEU GLN PRO SER ILE ASN GLU GLU SEQRES 3 C 92 ILE GLN THR VAL PHE ASN LYS TYR MET LYS PHE PHE GLN SEQRES 4 C 92 LYS ALA ALA LEU ASN VAL ARG ASP ASN VAL GLY GLU GLU SEQRES 5 C 92 VAL ASP ALA GLU GLN LEU ILE GLN GLU ALA CYS ARG SER SEQRES 6 C 92 CYS LEU GLU GLN ALA LYS LEU LEU PHE SER ASP GLY GLU SEQRES 7 C 92 LYS VAL ILE PRO ARG LEU THR HIS GLU LEU PRO GLY ILE SEQRES 8 C 92 LYS SEQRES 1 D 92 MET THR THR SER PHE THR ASP PRO ALA ILE SER MET ASP SEQRES 2 D 92 LEU LEU ARG ALA VAL LEU GLN PRO SER ILE ASN GLU GLU SEQRES 3 D 92 ILE GLN THR VAL PHE ASN LYS TYR MET LYS PHE PHE GLN SEQRES 4 D 92 LYS ALA ALA LEU ASN VAL ARG ASP ASN VAL GLY GLU GLU SEQRES 5 D 92 VAL ASP ALA GLU GLN LEU ILE GLN GLU ALA CYS ARG SER SEQRES 6 D 92 CYS LEU GLU GLN ALA LYS LEU LEU PHE SER ASP GLY GLU SEQRES 7 D 92 LYS VAL ILE PRO ARG LEU THR HIS GLU LEU PRO GLY ILE SEQRES 8 D 92 LYS SEQRES 1 E 92 MET THR THR SER PHE THR ASP PRO ALA ILE SER MET ASP SEQRES 2 E 92 LEU LEU ARG ALA VAL LEU GLN PRO SER ILE ASN GLU GLU SEQRES 3 E 92 ILE GLN THR VAL PHE ASN LYS TYR MET LYS PHE PHE GLN SEQRES 4 E 92 LYS ALA ALA LEU ASN VAL ARG ASP ASN VAL GLY GLU GLU SEQRES 5 E 92 VAL ASP ALA GLU GLN LEU ILE GLN GLU ALA CYS ARG SER SEQRES 6 E 92 CYS LEU GLU GLN ALA LYS LEU LEU PHE SER ASP GLY GLU SEQRES 7 E 92 LYS VAL ILE PRO ARG LEU THR HIS GLU LEU PRO GLY ILE SEQRES 8 E 92 LYS SEQRES 1 F 92 MET THR THR SER PHE THR ASP PRO ALA ILE SER MET ASP SEQRES 2 F 92 LEU LEU ARG ALA VAL LEU GLN PRO SER ILE ASN GLU GLU SEQRES 3 F 92 ILE GLN THR VAL PHE ASN LYS TYR MET LYS PHE PHE GLN SEQRES 4 F 92 LYS ALA ALA LEU ASN VAL ARG ASP ASN VAL GLY GLU GLU SEQRES 5 F 92 VAL ASP ALA GLU GLN LEU ILE GLN GLU ALA CYS ARG SER SEQRES 6 F 92 CYS LEU GLU GLN ALA LYS LEU LEU PHE SER ASP GLY GLU SEQRES 7 F 92 LYS VAL ILE PRO ARG LEU THR HIS GLU LEU PRO GLY ILE SEQRES 8 F 92 LYS FORMUL 7 HOH *129(H2 O) HELIX 1 1 ALA A 64 LYS A 88 1 25 HELIX 2 2 TYR A 89 VAL A 104 1 16 HELIX 3 3 ASP A 109 LYS A 126 1 18 HELIX 4 4 LEU A 127 SER A 130 5 4 HELIX 5 5 ASP B 62 LYS B 88 1 27 HELIX 6 6 TYR B 89 GLY B 105 1 17 HELIX 7 7 ASP B 109 LYS B 126 1 18 HELIX 8 8 LEU B 127 SER B 130 5 4 HELIX 9 9 ILE C 65 LYS C 88 1 24 HELIX 10 10 TYR C 89 GLY C 105 1 17 HELIX 11 11 ASP C 109 LYS C 126 1 18 HELIX 12 12 LEU C 127 SER C 130 5 4 HELIX 13 13 PRO D 63 LYS D 88 1 26 HELIX 14 14 TYR D 89 VAL D 104 1 16 HELIX 15 15 ASP D 109 LYS D 126 1 18 HELIX 16 16 LEU D 127 SER D 130 5 4 HELIX 17 17 ASP E 62 LYS E 88 1 27 HELIX 18 18 TYR E 89 VAL E 104 1 16 HELIX 19 19 ASP E 109 LYS E 126 1 18 HELIX 20 20 LEU E 127 SER E 130 5 4 HELIX 21 21 SER F 66 LYS F 88 1 23 HELIX 22 22 TYR F 89 ASN F 103 1 15 HELIX 23 23 ASP F 109 LYS F 126 1 18 HELIX 24 24 LEU F 127 SER F 130 5 4 CRYST1 54.910 103.051 108.931 90.00 90.00 90.00 P 21 21 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018212 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009704 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009180 0.00000