HEADER SIGNALING PROTEIN 27-NOV-14 4D7R TITLE CRYSTAL STRUCTURE OF A CHIMERIC PROTEIN WITH THE SEC7 DOMAIN OF TITLE 2 RICKETTSIA PROWAZEKII RALF AND THE CAPPING DOMAIN OF LEGIONELLA TITLE 3 PNEUMOPHILA RALF COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLINE/BETAINE TRANSPORTER, RALF; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 2-195,195-374; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RICKETTSIA PROWAZEKII STR. MADRID E, LEGIONELLA SOURCE 3 PNEUMOPHILA SUBSP. PNEUMOPHILA STR. PHILADELPHIA 1; SOURCE 4 ORGANISM_TAXID: 272947, 272624; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDEST17 KEYWDS SIGNALING PROTEIN, GUANINE NUCLEOTIDE EXCHANGE FACTOR, BACTERIAL KEYWDS 2 PATHOGENS, CHIMERIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.FOLLY-KLAN,B.SANCERNE,E.ALIX,C.R.ROY,J.CHERFILS,V.CAMPANACCI REVDAT 4 20-DEC-23 4D7R 1 REMARK REVDAT 3 15-MAR-17 4D7R 1 SOURCE REVDAT 2 18-FEB-15 4D7R 1 JRNL REVDAT 1 14-JAN-15 4D7R 0 JRNL AUTH M.FOLLY-KLAN,B.SANCERNE,E.ALIX,C.R.ROY,J.CHERFILS, JRNL AUTH 2 V.CAMPANACCI JRNL TITL ON THE USE OF LEGIONELLA/RICKETTSIA CHIMERAS TO INVESTIGATE JRNL TITL 2 THE STRUCTURE AND REGULATION OF RICKETTSIA EFFECTOR RALF. JRNL REF J.STRUCT.BIOL. V. 189 98 2015 JRNL REFN ISSN 1047-8477 JRNL PMID 25498244 JRNL DOI 10.1016/J.JSB.2014.12.001 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 33125 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1678 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 17 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.85 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.90 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2766 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2018 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2623 REMARK 3 BIN R VALUE (WORKING SET) : 0.2008 REMARK 3 BIN FREE R VALUE : 0.2205 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.17 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 143 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2870 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 418 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.85970 REMARK 3 B22 (A**2) : 2.25580 REMARK 3 B33 (A**2) : -4.11550 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.11700 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.238 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.141 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.131 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.134 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.128 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2985 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4036 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1073 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 93 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 418 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2985 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 397 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3874 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.02 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.92 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.63 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 13.5607 -0.2830 4.4119 REMARK 3 T TENSOR REMARK 3 T11: -0.0411 T22: -0.0728 REMARK 3 T33: -0.0373 T12: -0.0043 REMARK 3 T13: -0.0373 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 0.3930 L22: 1.1146 REMARK 3 L33: 0.6880 L12: 0.0164 REMARK 3 L13: 0.0724 L23: 0.3482 REMARK 3 S TENSOR REMARK 3 S11: 0.0128 S12: -0.0083 S13: 0.0183 REMARK 3 S21: -0.0444 S22: -0.0391 S23: 0.0185 REMARK 3 S31: -0.0705 S32: -0.0599 S33: 0.0263 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4D7R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1290062358. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33357 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 43.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 3.280 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.24 REMARK 200 R MERGE FOR SHELL (I) : 0.67000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1XSZ REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM CHLORIDE, 20% PEG 3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 47.42000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -27 REMARK 465 SER A -26 REMARK 465 TYR A -25 REMARK 465 TYR A -24 REMARK 465 HIS A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 LEU A -17 REMARK 465 GLU A -16 REMARK 465 SER A -15 REMARK 465 THR A -14 REMARK 465 SER A -13 REMARK 465 LEU A -12 REMARK 465 TYR A -11 REMARK 465 LYS A -10 REMARK 465 LYS A -9 REMARK 465 ALA A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 GLU A -5 REMARK 465 ASN A -4 REMARK 465 LEU A -3 REMARK 465 GLY A 353 REMARK 465 VAL A 354 REMARK 465 PRO A 355 REMARK 465 LYS A 356 REMARK 465 ASP A 357 REMARK 465 PRO A 358 REMARK 465 ASP A 359 REMARK 465 ALA A 360 REMARK 465 GLU A 361 REMARK 465 MET A 362 REMARK 465 GLN A 363 REMARK 465 LYS A 364 REMARK 465 GLU A 365 REMARK 465 LYS A 366 REMARK 465 GLY A 367 REMARK 465 ARG A 368 REMARK 465 GLN A 369 REMARK 465 LEU A 370 REMARK 465 LYS A 371 REMARK 465 PHE A 372 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 352 CG CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 11 CG CD CE NZ REMARK 480 LYS A 171 CD CE NZ REMARK 480 LYS A 180 CD CE NZ REMARK 480 LYS A 196 CD CE NZ REMARK 480 LYS A 210 CD CE NZ REMARK 480 LYS A 266 CG CD CE NZ REMARK 480 GLN A 298 CD OE1 NE2 REMARK 480 LYS A 300 CD CE NZ REMARK 480 LYS A 318 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2063 O HOH A 2064 1.59 REMARK 500 CD LYS A 11 O HOH A 2029 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 53 CD GLU A 53 OE1 -0.070 REMARK 500 LEU A 350 C LYS A 351 N 0.238 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 351 CD - CE - NZ ANGL. DEV. = 14.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 119 46.17 -141.11 REMARK 500 SER A 170 -20.57 76.01 REMARK 500 SER A 170 -26.44 77.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2080 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH A2144 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH A2187 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH A2415 DISTANCE = 7.60 ANGSTROMS REMARK 525 HOH A2416 DISTANCE = 7.49 ANGSTROMS REMARK 525 HOH A2417 DISTANCE = 7.43 ANGSTROMS REMARK 525 HOH A2418 DISTANCE = 7.57 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4D7Q RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A CHIMERIC PROTEIN WITH THE SEC7 DOMAIN OF REMARK 900 LEGIONELLA PNEUMOPHILA RALF AND THE CAPPING DOMAIN OF RICKETTSIA REMARK 900 PROWAZEKII RALF REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS IS A CHIMERIC PROTEIN CONTAINING RESIDUES 2 TO 195 REMARK 999 FROM RICKETTSIA PROWAZEKII RALF (M9TGB4) AND RESIDUES 198 REMARK 999 TO 374 FROM LEGIONELLA PNEUMOPHILA RALF (Q8RT31). THE N- REMARK 999 TERMINAL SEQUENCE MSYYHHHHHHLESTSLYKKAGLENLYFQG REMARK 999 CORRESPONDS TO THE 6-HISTIDINE TAG AND TEV PROTEASE REMARK 999 CLEAVAGE SITE. DBREF 4D7R A 2 195 UNP M9TGB4 M9TGB4_RICPO 2 195 DBREF 4D7R A 198 372 UNP Q8RT31 Q8RT31_LEGPN 200 374 SEQADV 4D7R MET A -27 UNP M9TGB4 EXPRESSION TAG SEQADV 4D7R SER A -26 UNP M9TGB4 EXPRESSION TAG SEQADV 4D7R TYR A -25 UNP M9TGB4 EXPRESSION TAG SEQADV 4D7R TYR A -24 UNP M9TGB4 EXPRESSION TAG SEQADV 4D7R HIS A -23 UNP M9TGB4 EXPRESSION TAG SEQADV 4D7R HIS A -22 UNP M9TGB4 EXPRESSION TAG SEQADV 4D7R HIS A -21 UNP M9TGB4 EXPRESSION TAG SEQADV 4D7R HIS A -20 UNP M9TGB4 EXPRESSION TAG SEQADV 4D7R HIS A -19 UNP M9TGB4 EXPRESSION TAG SEQADV 4D7R HIS A -18 UNP M9TGB4 EXPRESSION TAG SEQADV 4D7R LEU A -17 UNP M9TGB4 EXPRESSION TAG SEQADV 4D7R GLU A -16 UNP M9TGB4 EXPRESSION TAG SEQADV 4D7R SER A -15 UNP M9TGB4 EXPRESSION TAG SEQADV 4D7R THR A -14 UNP M9TGB4 EXPRESSION TAG SEQADV 4D7R SER A -13 UNP M9TGB4 EXPRESSION TAG SEQADV 4D7R LEU A -12 UNP M9TGB4 EXPRESSION TAG SEQADV 4D7R TYR A -11 UNP M9TGB4 EXPRESSION TAG SEQADV 4D7R LYS A -10 UNP M9TGB4 EXPRESSION TAG SEQADV 4D7R LYS A -9 UNP M9TGB4 EXPRESSION TAG SEQADV 4D7R ALA A -8 UNP M9TGB4 EXPRESSION TAG SEQADV 4D7R GLY A -7 UNP M9TGB4 EXPRESSION TAG SEQADV 4D7R LEU A -6 UNP M9TGB4 EXPRESSION TAG SEQADV 4D7R GLU A -5 UNP M9TGB4 EXPRESSION TAG SEQADV 4D7R ASN A -4 UNP M9TGB4 EXPRESSION TAG SEQADV 4D7R LEU A -3 UNP M9TGB4 EXPRESSION TAG SEQADV 4D7R TYR A -2 UNP M9TGB4 EXPRESSION TAG SEQADV 4D7R PHE A -1 UNP M9TGB4 EXPRESSION TAG SEQADV 4D7R GLN A 0 UNP M9TGB4 EXPRESSION TAG SEQADV 4D7R GLY A 1 UNP M9TGB4 EXPRESSION TAG SEQADV 4D7R LYS A 196 UNP M9TGB4 LINKER SEQADV 4D7R THR A 197 UNP M9TGB4 LINKER SEQRES 1 A 400 MET SER TYR TYR HIS HIS HIS HIS HIS HIS LEU GLU SER SEQRES 2 A 400 THR SER LEU TYR LYS LYS ALA GLY LEU GLU ASN LEU TYR SEQRES 3 A 400 PHE GLN GLY ASP SER LEU LEU LYS ASN GLU VAL ILE LYS SEQRES 4 A 400 LEU PHE ASN ASP LYS PRO LYS SER GLY ILE ALA ARG ILE SEQRES 5 A 400 LYS LYS TRP CYS THR ASP ASN ASN GLN ASP PHE ILE ALA SEQRES 6 A 400 GLU THR ALA LYS ILE PHE TYR GLU GLU LYS SER ASN LEU SEQRES 7 A 400 ASN LEU GLU PHE VAL GLY ASP TYR LEU GLY THR ASP GLY SEQRES 8 A 400 VAL ASP ASN GLN LYS VAL LEU GLU SER PHE THR LYS GLN SEQRES 9 A 400 PHE ASP PHE LYS GLU LYS ASP TYR LEU GLU SER LEU ARG SEQRES 10 A 400 ARG PHE LEU GLN SER PHE LYS LEU PRO GLY GLU ALA GLN SEQRES 11 A 400 LYS ILE ASP ARG LEU VAL GLU SER PHE GLY THR HIS TYR SEQRES 12 A 400 TYR GLU GLN ASN LEU ASN ILE ASP ILE ASN SER LYS ASP SEQRES 13 A 400 ALA ALA TYR ILE LEU ALA TYR GLN THR ILE MET LEU ASN SEQRES 14 A 400 THR ASP LEU HIS ASN PRO SER ILE ALA LYS SER LYS LYS SEQRES 15 A 400 MET THR PHE GLU GLN LEU LYS ASN ASN LEU LYS GLY THR SEQRES 16 A 400 ASN GLU SER LYS ASN PHE ASN ASP ASN PHE LEU LYS LYS SEQRES 17 A 400 ILE TYR ASP GLU ILE GLU ALA LYS PRO PHE LYS LEU ASN SEQRES 18 A 400 PHE VAL LYS THR SER PRO GLY TYR GLU LEU THR SER THR SEQRES 19 A 400 THR LEU ASN LYS ASP SER THR PHE LYS LYS LEU ASP SER SEQRES 20 A 400 PHE LEU HIS SER THR ASP VAL ASN ILE ASN THR VAL PHE SEQRES 21 A 400 PRO GLY ILE GLY ASP ASN VAL LYS THR THR VAL ASP GLN SEQRES 22 A 400 PRO LYS SER TRP LEU SER PHE PHE THR GLY TYR LYS GLY SEQRES 23 A 400 THR ILE THR LEU THR ASP ASN LYS THR SER ALA GLN ALA SEQRES 24 A 400 THR ILE GLN VAL TYR THR PRO ASN ILE PHE SER LYS TRP SEQRES 25 A 400 LEU PHE GLY GLU GLN PRO ARG VAL ILE ILE GLN PRO GLY SEQRES 26 A 400 GLN THR LYS GLU SER ILE ASP LEU ALA ALA LYS ALA ALA SEQRES 27 A 400 ALA ASP PHE SER SER PRO VAL LYS ASN PHE LYS ALA THR SEQRES 28 A 400 TYR ASP TYR GLU VAL GLY ASP LEU ILE LYS ALA TYR ASP SEQRES 29 A 400 ASN GLN LYS LYS LEU ILE THR ILE GLU ARG ASN LEU ALA SEQRES 30 A 400 LEU LYS GLU GLY VAL PRO LYS ASP PRO ASP ALA GLU MET SEQRES 31 A 400 GLN LYS GLU LYS GLY ARG GLN LEU LYS PHE FORMUL 2 HOH *418(H2 O) HELIX 1 1 ASP A 2 LYS A 16 1 15 HELIX 2 2 LYS A 16 ASN A 31 1 16 HELIX 3 3 ASP A 34 GLU A 46 1 13 HELIX 4 4 LYS A 47 LEU A 50 5 4 HELIX 5 5 ASN A 51 THR A 61 1 11 HELIX 6 6 GLY A 63 GLN A 76 1 14 HELIX 7 7 ASP A 83 SER A 94 1 12 HELIX 8 8 GLU A 100 ASN A 119 1 20 HELIX 9 9 SER A 126 ASN A 146 1 21 HELIX 10 10 ALA A 150 LYS A 154 5 5 HELIX 11 11 THR A 156 LEU A 164 1 9 HELIX 12 12 ASN A 174 LYS A 188 1 15 HELIX 13 13 THR A 207 LYS A 210 5 4 HELIX 14 14 ASP A 211 LEU A 221 1 11 HELIX 15 15 ASN A 227 VAL A 231 5 5 HELIX 16 16 PHE A 232 GLY A 236 5 5 HELIX 17 17 LYS A 247 GLY A 255 1 9 HELIX 18 18 SER A 282 GLY A 287 1 6 HELIX 19 19 GLU A 301 ASP A 312 1 12 HELIX 20 20 GLU A 327 ALA A 349 1 23 SHEET 1 AA 6 VAL A 239 ASP A 244 0 SHEET 2 AA 6 TYR A 256 ASP A 264 -1 O THR A 259 N ASP A 244 SHEET 3 AA 6 GLN A 270 TYR A 276 -1 O ALA A 271 N LEU A 262 SHEET 4 AA 6 ARG A 291 PRO A 296 -1 O ARG A 291 N TYR A 276 SHEET 5 AA 6 GLY A 200 THR A 204 -1 O TYR A 201 N ILE A 294 SHEET 6 AA 6 ASN A 319 LYS A 321 -1 O ASN A 319 N GLU A 202 CRYST1 45.690 94.840 47.140 90.00 111.74 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021887 0.000000 0.008727 0.00000 SCALE2 0.000000 0.010544 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022838 0.00000