HEADER OXIDOREDUCTASE 27-NOV-14 4D7V TITLE THE STRUCTURE OF THE CATALYTIC DOMAIN OF NCLPMO9C FROM THE FILAMENTOUS TITLE 2 FUNGUS NEUROSPORA CRASSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDOGLUCANASE II; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: AA9, RESIDUES 17-243; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: CATALYTIC DOMAIN OF NCLPMO9C SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEUROSPORA CRASSA (STRAIN ATCC 24698 / 74-OR23- SOURCE 3 1A / CBS 708.71 / DSM 1257 / FGSC 987); SOURCE 4 ORGANISM_TAXID: 367110; SOURCE 5 STRAIN: ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987; SOURCE 6 GENE: GH61-3, NCU02916; SOURCE 7 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: PICHIAPINK STRAIN4; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PPINK-GAPHC KEYWDS OXIDOREDUCTASE, CATALYTIC DOMAIN, HEMICELLULOSE ACTIVE, AA9 EXPDTA X-RAY DIFFRACTION AUTHOR A.S.BORISOVA,T.ISAKSEN,M.SANDGREN,M.SORLIE,V.G.H.EIJSINK,M.DIMAROGONA REVDAT 6 16-OCT-24 4D7V 1 REMARK REVDAT 5 01-MAY-24 4D7V 1 REMARK LINK REVDAT 4 17-JAN-18 4D7V 1 REMARK REVDAT 3 07-OCT-15 4D7V 1 JRNL REVDAT 2 29-JUL-15 4D7V 1 JRNL REVDAT 1 22-JUL-15 4D7V 0 JRNL AUTH A.S.BORISOVA,T.ISAKSEN,M.DIMAROGONA,A.A.KOGNOLE,G.MATHIESEN, JRNL AUTH 2 A.VARNAI,A.K.ROHR,C.PAYNE,M.SORLIE,M.SANDGREN,V.G.H.EIJSINK, JRNL AUTH 3 M.SORLIE JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF A LYTIC JRNL TITL 2 POLYSACCHARIDE MONOOXYGENASE WITH BROAD SUBSTRATE JRNL TITL 3 SPECIFICITY JRNL REF J.BIOL.CHEM. V. 290 22955 2015 JRNL REFN ISSN 0021-9258 JRNL PMID 26178376 JRNL DOI 10.1074/JBC.M115.660183 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 64.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 29810 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 1510 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2086 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.3080 REMARK 3 BIN FREE R VALUE SET COUNT : 107 REMARK 3 BIN FREE R VALUE : 0.3140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3259 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 423 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 7.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 9.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.72700 REMARK 3 B22 (A**2) : 2.53300 REMARK 3 B33 (A**2) : -0.79200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.11600 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.223 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.190 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.165 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.829 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3472 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3220 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4733 ; 1.447 ; 1.939 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7424 ; 0.806 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 475 ; 6.869 ; 5.021 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 131 ;35.073 ;25.878 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 498 ;13.427 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ; 6.193 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 513 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4134 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 774 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1123 ; 0.270 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 90 ; 0.222 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1719 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 128 ; 0.152 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.028 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1865 ; 0.702 ; 0.961 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1856 ; 0.699 ; 0.957 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2335 ; 1.249 ; 1.431 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1607 ; 0.754 ; 0.950 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2395 ; 1.176 ; 1.409 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. RESIDUES 182-184 HAVE BEEN OMITTED IN CHAINB DUE TO REMARK 3 INSUFFICIENT ELECTRON DENSITY REMARK 4 REMARK 4 4D7V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1290062318. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29831 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 64.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.31000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 1.27000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: SAME PROTEIN WITH ONE METAL INSTEAD OF 3 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M ZINC ACETATE, 17.5% PEG3350, PH 8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.76400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO B 182 REMARK 465 SER B 183 REMARK 465 ASN B 184 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N GLU B 150 O HOH B 2090 2.09 REMARK 500 O HOH B 2087 O HOH B 2088 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 169 CA - CB - SG ANGL. DEV. = 7.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 40 173.67 79.85 REMARK 500 ASP A 74 -156.23 -155.65 REMARK 500 CYS B 39 38.89 -144.22 REMARK 500 ASN B 40 174.65 77.70 REMARK 500 ASN B 40 174.65 77.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2023 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH B2178 DISTANCE = 7.25 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1228 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 1 ND1 REMARK 620 2 HIS A 83 NE2 136.4 REMARK 620 3 ACT A1231 OXT 108.3 112.5 REMARK 620 4 ACT A1232 O 93.3 86.5 70.4 REMARK 620 5 HOH A2001 O 87.6 95.6 65.4 9.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1229 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 64 NE2 REMARK 620 2 HOH A2091 O 113.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1230 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 74 OD1 REMARK 620 2 ASP A 74 OD2 53.2 REMARK 620 3 HOH A2098 O 98.6 151.5 REMARK 620 4 HOH A2099 O 87.7 90.7 83.7 REMARK 620 5 HOH A2103 O 63.3 69.1 103.8 150.7 REMARK 620 6 HOH A2104 O 166.6 113.4 94.9 94.2 112.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1228 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 1 ND1 REMARK 620 2 HIS B 83 NE2 141.4 REMARK 620 3 ACT B1231 O 108.5 109.2 REMARK 620 4 ACT B1232 OXT 63.2 90.0 121.0 REMARK 620 5 ACT B1232 O 89.2 96.6 68.8 53.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1229 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 64 NE2 REMARK 620 2 HOH B2076 O 89.3 REMARK 620 3 HOH B2187 O 169.9 85.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1230 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 74 OD2 REMARK 620 2 ASP B 74 OD1 53.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1228 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1228 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1229 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1229 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1230 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1230 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 1231 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1231 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1232 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 1232 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 1233 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 1234 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 1235 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1233 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1234 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1235 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4D7U RELATED DB: PDB REMARK 900 THE STRUCTURE OF THE CATALYTIC DOMAIN OF NCLPMO9C FROM THE REMARK 900 FILAMENTOUS FUNGUS NEUROSPORA CRASSA REMARK 999 REMARK 999 SEQUENCE REMARK 999 CATALYTIC DOMAIN OF FULL LENGTH ENZYME DBREF 4D7V A 1 227 UNP Q7SHI8 Q7SHI8_NEUCR 17 243 DBREF 4D7V B 1 227 UNP Q7SHI8 Q7SHI8_NEUCR 17 243 SEQRES 1 A 227 HIS THR ILE PHE GLN LYS VAL SER VAL ASN GLY ALA ASP SEQRES 2 A 227 GLN GLY GLN LEU LYS GLY ILE ARG ALA PRO ALA ASN ASN SEQRES 3 A 227 ASN PRO VAL THR ASP VAL MET SER SER ASP ILE ILE CYS SEQRES 4 A 227 ASN ALA VAL THR MET LYS ASP SER ASN VAL LEU THR VAL SEQRES 5 A 227 PRO ALA GLY ALA LYS VAL GLY HIS PHE TRP GLY HIS GLU SEQRES 6 A 227 ILE GLY GLY ALA ALA GLY PRO ASN ASP ALA ASP ASN PRO SEQRES 7 A 227 ILE ALA ALA SER HIS LYS GLY PRO ILE MET VAL TYR LEU SEQRES 8 A 227 ALA LYS VAL ASP ASN ALA ALA THR THR GLY THR SER GLY SEQRES 9 A 227 LEU LYS TRP PHE LYS VAL ALA GLU ALA GLY LEU SER ASN SEQRES 10 A 227 GLY LYS TRP ALA VAL ASP ASP LEU ILE ALA ASN ASN GLY SEQRES 11 A 227 TRP SER TYR PHE ASP MET PRO THR CYS ILE ALA PRO GLY SEQRES 12 A 227 GLN TYR LEU MET ARG ALA GLU LEU ILE ALA LEU HIS ASN SEQRES 13 A 227 ALA GLY SER GLN ALA GLY ALA GLN PHE TYR ILE GLY CYS SEQRES 14 A 227 ALA GLN ILE ASN VAL THR GLY GLY GLY SER ALA SER PRO SEQRES 15 A 227 SER ASN THR VAL SER PHE PRO GLY ALA TYR SER ALA SER SEQRES 16 A 227 ASP PRO GLY ILE LEU ILE ASN ILE TYR GLY GLY SER GLY SEQRES 17 A 227 LYS THR ASP ASN GLY GLY LYS PRO TYR GLN ILE PRO GLY SEQRES 18 A 227 PRO ALA LEU PHE THR CYS SEQRES 1 B 227 HIS THR ILE PHE GLN LYS VAL SER VAL ASN GLY ALA ASP SEQRES 2 B 227 GLN GLY GLN LEU LYS GLY ILE ARG ALA PRO ALA ASN ASN SEQRES 3 B 227 ASN PRO VAL THR ASP VAL MET SER SER ASP ILE ILE CYS SEQRES 4 B 227 ASN ALA VAL THR MET LYS ASP SER ASN VAL LEU THR VAL SEQRES 5 B 227 PRO ALA GLY ALA LYS VAL GLY HIS PHE TRP GLY HIS GLU SEQRES 6 B 227 ILE GLY GLY ALA ALA GLY PRO ASN ASP ALA ASP ASN PRO SEQRES 7 B 227 ILE ALA ALA SER HIS LYS GLY PRO ILE MET VAL TYR LEU SEQRES 8 B 227 ALA LYS VAL ASP ASN ALA ALA THR THR GLY THR SER GLY SEQRES 9 B 227 LEU LYS TRP PHE LYS VAL ALA GLU ALA GLY LEU SER ASN SEQRES 10 B 227 GLY LYS TRP ALA VAL ASP ASP LEU ILE ALA ASN ASN GLY SEQRES 11 B 227 TRP SER TYR PHE ASP MET PRO THR CYS ILE ALA PRO GLY SEQRES 12 B 227 GLN TYR LEU MET ARG ALA GLU LEU ILE ALA LEU HIS ASN SEQRES 13 B 227 ALA GLY SER GLN ALA GLY ALA GLN PHE TYR ILE GLY CYS SEQRES 14 B 227 ALA GLN ILE ASN VAL THR GLY GLY GLY SER ALA SER PRO SEQRES 15 B 227 SER ASN THR VAL SER PHE PRO GLY ALA TYR SER ALA SER SEQRES 16 B 227 ASP PRO GLY ILE LEU ILE ASN ILE TYR GLY GLY SER GLY SEQRES 17 B 227 LYS THR ASP ASN GLY GLY LYS PRO TYR GLN ILE PRO GLY SEQRES 18 B 227 PRO ALA LEU PHE THR CYS HET ZN A1228 1 HET ZN A1229 1 HET ZN A1230 1 HET ACT A1231 4 HET ACT A1232 4 HET ACT A1233 4 HET GOL A1234 6 HET GOL A1235 6 HET ZN B1228 1 HET ZN B1229 1 HET ZN B1230 1 HET ACT B1231 4 HET ACT B1232 4 HET ACT B1233 4 HET ACT B1234 4 HET ACT B1235 4 HETNAM ZN ZINC ION HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ZN 6(ZN 2+) FORMUL 6 ACT 8(C2 H3 O2 1-) FORMUL 9 GOL 2(C3 H8 O3) FORMUL 19 HOH *423(H2 O) HELIX 1 1 SER A 35 ASN A 40 1 6 HELIX 2 2 ILE A 66 GLY A 71 5 6 HELIX 3 3 ALA A 121 ASN A 128 1 8 HELIX 4 4 ASP A 211 LYS A 215 5 5 HELIX 5 5 SER B 35 ASN B 40 1 6 HELIX 6 6 ILE B 66 GLY B 71 5 6 HELIX 7 7 ALA B 121 ASN B 128 1 8 HELIX 8 8 ASP B 211 LYS B 215 5 5 SHEET 1 AA 4 ALA A 12 ASP A 13 0 SHEET 2 AA 4 ILE A 3 VAL A 9 -1 O VAL A 9 N ALA A 12 SHEET 3 AA 4 LYS A 57 GLY A 63 -1 O GLY A 59 N SER A 8 SHEET 4 AA 4 TRP A 131 ASP A 135 -1 O SER A 132 N HIS A 60 SHEET 1 AB 6 VAL A 42 MET A 44 0 SHEET 2 AB 6 ILE A 20 PRO A 23 -1 O ALA A 22 N THR A 43 SHEET 3 AB 6 GLN A 164 THR A 175 -1 O CYS A 169 N ARG A 21 SHEET 4 AB 6 GLY A 143 ALA A 153 -1 O GLY A 143 N VAL A 174 SHEET 5 AB 6 ILE A 87 LYS A 93 -1 O MET A 88 N GLU A 150 SHEET 6 AB 6 TRP A 107 ALA A 113 -1 O PHE A 108 N LEU A 91 SHEET 1 AC 4 VAL A 42 MET A 44 0 SHEET 2 AC 4 ILE A 20 PRO A 23 -1 O ALA A 22 N THR A 43 SHEET 3 AC 4 GLN A 164 THR A 175 -1 O CYS A 169 N ARG A 21 SHEET 4 AC 4 LEU A 50 PRO A 53 -1 O LEU A 50 N ASN A 173 SHEET 1 AD 2 LEU A 115 SER A 116 0 SHEET 2 AD 2 LYS A 119 TRP A 120 -1 O LYS A 119 N SER A 116 SHEET 1 BA 4 ALA B 12 ASP B 13 0 SHEET 2 BA 4 ILE B 3 VAL B 9 -1 O VAL B 9 N ALA B 12 SHEET 3 BA 4 LYS B 57 GLY B 63 -1 O GLY B 59 N SER B 8 SHEET 4 BA 4 TRP B 131 ASP B 135 -1 O SER B 132 N HIS B 60 SHEET 1 BB 2 ILE B 20 ARG B 21 0 SHEET 2 BB 2 GLN B 164 THR B 175 -1 O CYS B 169 N ARG B 21 SHEET 1 BC 2 LEU B 50 PRO B 53 0 SHEET 2 BC 2 GLN B 164 THR B 175 -1 O GLN B 171 N LEU B 50 SHEET 1 BD 5 TRP B 107 ALA B 113 0 SHEET 2 BD 5 ILE B 87 LYS B 93 -1 O ILE B 87 N ALA B 113 SHEET 3 BD 5 GLY B 143 ALA B 153 -1 O LEU B 146 N ALA B 92 SHEET 4 BD 5 GLN B 164 THR B 175 -1 O GLN B 164 N ALA B 153 SHEET 5 BD 5 LEU B 50 PRO B 53 -1 O LEU B 50 N ASN B 173 SHEET 1 BE 5 TRP B 107 ALA B 113 0 SHEET 2 BE 5 ILE B 87 LYS B 93 -1 O ILE B 87 N ALA B 113 SHEET 3 BE 5 GLY B 143 ALA B 153 -1 O LEU B 146 N ALA B 92 SHEET 4 BE 5 GLN B 164 THR B 175 -1 O GLN B 164 N ALA B 153 SHEET 5 BE 5 ILE B 20 ARG B 21 -1 O ARG B 21 N CYS B 169 SHEET 1 BF 2 LEU B 115 SER B 116 0 SHEET 2 BF 2 LYS B 119 TRP B 120 -1 O LYS B 119 N SER B 116 SSBOND 1 CYS A 39 CYS A 169 1555 1555 2.01 SSBOND 2 CYS A 139 CYS A 227 1555 1555 2.93 SSBOND 3 CYS B 39 CYS B 169 1555 1555 2.04 SSBOND 4 CYS B 139 CYS B 227 1555 1555 2.08 LINK ND1 HIS A 1 ZN ZN A1228 1555 1555 2.13 LINK NE2 HIS A 64 ZN ZN A1229 1555 1555 2.08 LINK OD1 ASP A 74 ZN ZN A1230 1555 1555 2.65 LINK OD2 ASP A 74 ZN ZN A1230 1555 1555 2.03 LINK NE2 HIS A 83 ZN ZN A1228 1555 1555 2.14 LINK ZN ZN A1228 OXT ACT A1231 1555 1555 2.34 LINK ZN ZN A1228 O ACT A1232 1555 1555 2.30 LINK ZN ZN A1228 O HOH A2001 1555 1555 2.61 LINK ZN ZN A1229 O HOH A2091 1555 1555 1.98 LINK ZN ZN A1230 O HOH A2098 1555 1555 2.17 LINK ZN ZN A1230 O HOH A2099 1555 1555 2.17 LINK ZN ZN A1230 O HOH A2103 1555 1555 2.61 LINK ZN ZN A1230 O HOH A2104 1555 1555 2.00 LINK ND1 HIS B 1 ZN ZN B1228 1555 1555 2.19 LINK NE2 HIS B 64 ZN ZN B1229 1555 1555 2.06 LINK OD2 ASP B 74 ZN ZN B1230 1555 1555 2.03 LINK OD1 ASP B 74 ZN ZN B1230 1555 1555 2.68 LINK NE2 HIS B 83 ZN ZN B1228 1555 1555 2.06 LINK ZN ZN B1228 O ACT B1231 1555 1555 2.07 LINK ZN ZN B1228 OXT ACT B1232 1555 1555 2.21 LINK ZN ZN B1228 O ACT B1232 1555 1555 2.59 LINK ZN ZN B1229 O HOH B2076 1555 1555 1.84 LINK ZN ZN B1229 O HOH B2187 1555 1555 2.52 CISPEP 1 ASN A 77 PRO A 78 0 21.84 CISPEP 2 PHE A 188 PRO A 189 0 -10.68 CISPEP 3 ASN B 77 PRO B 78 0 22.08 CISPEP 4 PHE B 188 PRO B 189 0 -5.97 SITE 1 AC1 5 HIS A 1 HIS A 83 ACT A1231 ACT A1232 SITE 2 AC1 5 HOH A2001 SITE 1 AC2 5 HIS B 1 HIS B 83 TYR B 166 ACT B1231 SITE 2 AC2 5 ACT B1232 SITE 1 AC3 3 HIS A 64 HOH A2091 HOH A2092 SITE 1 AC4 3 HIS B 64 HOH B2076 HOH B2187 SITE 1 AC5 5 ASP A 74 HOH A2098 HOH A2099 HOH A2103 SITE 2 AC5 5 HOH A2104 SITE 1 AC6 1 ASP B 74 SITE 1 AC7 8 HIS B 1 HIS B 64 ASP B 76 ILE B 79 SITE 2 AC7 8 ALA B 80 HIS B 83 ZN B1228 ACT B1232 SITE 1 AC8 9 HIS A 1 HIS A 64 ASP A 76 ILE A 79 SITE 2 AC8 9 ALA A 80 HIS A 83 ZN A1228 ACT A1232 SITE 3 AC8 9 HOH A2001 SITE 1 AC9 9 HIS A 1 HIS A 83 HIS A 155 ZN A1228 SITE 2 AC9 9 ACT A1231 HOH A2001 HOH A2056 GLY B 208 SITE 3 AC9 9 LYS B 209 SITE 1 BC1 10 GLY A 208 HOH A2055 HOH A2221 HIS B 1 SITE 2 BC1 10 HIS B 83 HIS B 155 GLN B 164 ZN B1228 SITE 3 BC1 10 ACT B1231 HOH B2141 SITE 1 BC2 9 ASN A 117 HIS B 60 ILE B 87 ALA B 111 SITE 2 BC2 9 ALA B 113 SER B 132 TYR B 133 PHE B 134 SITE 3 BC2 9 HOH B2129 SITE 1 BC3 5 GLY B 114 SER B 116 LYS B 119 TRP B 120 SITE 2 BC3 5 ASP B 124 SITE 1 BC4 5 ASP B 74 ALA B 75 ASP B 76 HOH B2081 SITE 2 BC4 5 HOH B2188 SITE 1 BC5 5 HIS A 60 ILE A 87 VAL A 89 SER A 132 SITE 2 BC5 5 TYR A 133 SITE 1 BC6 10 LEU A 115 ASN A 117 GLY A 118 PRO A 216 SITE 2 BC6 10 HOH A2142 HOH A2145 HOH A2223 GLU B 112 SITE 3 BC6 10 LEU B 224 HOH B2112 SITE 1 BC7 6 ASN A 173 THR A 175 HOH A2184 ASN B 173 SITE 2 BC7 6 HOH B2071 HOH B2147 CRYST1 44.308 67.528 65.592 90.00 100.91 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022569 0.000000 0.004350 0.00000 SCALE2 0.000000 0.014809 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015526 0.00000