HEADER HYDROLASE 10-JAN-12 4D8E TITLE HIGH RESOLUTION STRUCTURES OF MONOMERIC S. PYOGENES SPEB REVEALS ROLE TITLE 2 OF GLYCINE-RICH ACTIVE SITE LOOP COMPND MOL_ID: 1; COMPND 2 MOLECULE: STREPTOPAIN; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.22.10; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PYOGENES; SOURCE 3 ORGANISM_TAXID: 864568; SOURCE 4 STRAIN: ATCC 10782; SOURCE 5 GENE: HMPREF0841_0152, SPEB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET23B KEYWDS PAPAIN FOLD, CYSTEINE PROTEASE, E64 COMPLEX, SECRETED, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.E.GONZALEZ,D.W.WOLAN REVDAT 4 20-NOV-24 4D8E 1 REMARK SEQADV LINK REVDAT 3 01-AUG-12 4D8E 1 JRNL REVDAT 2 13-JUN-12 4D8E 1 JRNL REVDAT 1 06-JUN-12 4D8E 0 JRNL AUTH G.E.GONZALEZ-PAEZ,D.W.WOLAN JRNL TITL ULTRAHIGH AND HIGH RESOLUTION STRUCTURES AND MUTATIONAL JRNL TITL 2 ANALYSIS OF MONOMERIC STREPTOCOCCUS PYOGENES SPEB REVEAL A JRNL TITL 3 FUNCTIONAL ROLE FOR THE GLYCINE-RICH C-TERMINAL LOOP. JRNL REF J.BIOL.CHEM. V. 287 24412 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22645124 JRNL DOI 10.1074/JBC.M112.361576 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 35508 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1773 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.5509 - 3.5195 1.00 2795 165 0.1510 0.1645 REMARK 3 2 3.5195 - 2.7939 1.00 2687 134 0.1423 0.1767 REMARK 3 3 2.7939 - 2.4408 1.00 2647 135 0.1483 0.1642 REMARK 3 4 2.4408 - 2.2177 1.00 2606 146 0.1363 0.1611 REMARK 3 5 2.2177 - 2.0587 0.99 2621 135 0.1425 0.1810 REMARK 3 6 2.0587 - 1.9374 1.00 2595 151 0.1461 0.1988 REMARK 3 7 1.9374 - 1.8404 1.00 2582 130 0.1527 0.1951 REMARK 3 8 1.8404 - 1.7602 1.00 2585 136 0.1583 0.2079 REMARK 3 9 1.7602 - 1.6925 1.00 2577 130 0.1777 0.2211 REMARK 3 10 1.6925 - 1.6341 0.99 2582 128 0.1955 0.2520 REMARK 3 11 1.6341 - 1.5830 0.99 2569 135 0.2181 0.2705 REMARK 3 12 1.5830 - 1.5377 0.99 2519 142 0.2444 0.2781 REMARK 3 13 1.5377 - 1.4970 0.91 2370 106 0.3049 0.3403 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.39 REMARK 3 B_SOL : 52.01 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.12950 REMARK 3 B22 (A**2) : -0.24640 REMARK 3 B33 (A**2) : 0.11700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.020 2051 REMARK 3 ANGLE : 1.854 2780 REMARK 3 CHIRALITY : 0.133 283 REMARK 3 PLANARITY : 0.011 373 REMARK 3 DIHEDRAL : 12.837 733 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 146:204) REMARK 3 ORIGIN FOR THE GROUP (A): -20.6374 14.0504 2.9553 REMARK 3 T TENSOR REMARK 3 T11: 0.0746 T22: 0.0964 REMARK 3 T33: 0.0755 T12: 0.0026 REMARK 3 T13: 0.0019 T23: -0.0148 REMARK 3 L TENSOR REMARK 3 L11: 0.6178 L22: 0.5239 REMARK 3 L33: 0.8244 L12: 0.0381 REMARK 3 L13: 0.0521 L23: 0.0139 REMARK 3 S TENSOR REMARK 3 S11: -0.0128 S12: 0.0597 S13: -0.0483 REMARK 3 S21: -0.0059 S22: 0.0231 S23: 0.0216 REMARK 3 S31: -0.0176 S32: -0.0084 S33: -0.0143 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 205:217) REMARK 3 ORIGIN FOR THE GROUP (A): -6.8415 17.4492 12.9879 REMARK 3 T TENSOR REMARK 3 T11: 0.1286 T22: 0.0986 REMARK 3 T33: 0.0930 T12: 0.0162 REMARK 3 T13: 0.0071 T23: -0.0213 REMARK 3 L TENSOR REMARK 3 L11: 1.1916 L22: 1.2562 REMARK 3 L33: 1.3888 L12: 0.8408 REMARK 3 L13: -0.1566 L23: -0.9159 REMARK 3 S TENSOR REMARK 3 S11: 0.1293 S12: -0.2962 S13: -0.0131 REMARK 3 S21: 0.2370 S22: -0.0625 S23: 0.0546 REMARK 3 S31: -0.1383 S32: 0.2130 S33: -0.0837 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 218:237) REMARK 3 ORIGIN FOR THE GROUP (A): -8.4187 26.7554 -0.9843 REMARK 3 T TENSOR REMARK 3 T11: 0.1183 T22: 0.1278 REMARK 3 T33: 0.1366 T12: 0.0043 REMARK 3 T13: -0.0024 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.6641 L22: 0.7410 REMARK 3 L33: 0.7841 L12: 0.1037 REMARK 3 L13: 0.3156 L23: -0.5673 REMARK 3 S TENSOR REMARK 3 S11: -0.0551 S12: 0.0865 S13: 0.1142 REMARK 3 S21: -0.0673 S22: 0.0100 S23: -0.0255 REMARK 3 S31: -0.0444 S32: 0.0390 S33: 0.0509 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 238:254) REMARK 3 ORIGIN FOR THE GROUP (A): -23.6140 16.4868 16.1251 REMARK 3 T TENSOR REMARK 3 T11: 0.1100 T22: 0.0969 REMARK 3 T33: 0.0858 T12: 0.0098 REMARK 3 T13: -0.0046 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 1.6465 L22: 1.2322 REMARK 3 L33: 1.1258 L12: -0.0991 REMARK 3 L13: 0.3827 L23: -0.0041 REMARK 3 S TENSOR REMARK 3 S11: 0.0123 S12: -0.2772 S13: 0.0453 REMARK 3 S21: 0.0033 S22: -0.0016 S23: 0.0547 REMARK 3 S31: 0.0396 S32: -0.1600 S33: -0.0061 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 255:272) REMARK 3 ORIGIN FOR THE GROUP (A): -17.9802 19.7175 10.3624 REMARK 3 T TENSOR REMARK 3 T11: 0.1244 T22: 0.1023 REMARK 3 T33: 0.0974 T12: -0.0019 REMARK 3 T13: -0.0049 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 1.7801 L22: 0.1666 REMARK 3 L33: 1.0618 L12: -0.0943 REMARK 3 L13: -1.1477 L23: 0.2178 REMARK 3 S TENSOR REMARK 3 S11: 0.0132 S12: 0.0291 S13: 0.0391 REMARK 3 S21: 0.0366 S22: -0.0057 S23: 0.0224 REMARK 3 S31: -0.1057 S32: -0.0602 S33: -0.0342 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 273:311) REMARK 3 ORIGIN FOR THE GROUP (A): -6.1306 8.0316 3.5094 REMARK 3 T TENSOR REMARK 3 T11: 0.0859 T22: 0.1056 REMARK 3 T33: 0.1105 T12: -0.0012 REMARK 3 T13: -0.0040 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.6031 L22: 0.9345 REMARK 3 L33: 0.4930 L12: -0.1607 REMARK 3 L13: 0.1418 L23: 0.2207 REMARK 3 S TENSOR REMARK 3 S11: 0.0022 S12: 0.0124 S13: -0.0347 REMARK 3 S21: -0.0232 S22: 0.0333 S23: -0.0903 REMARK 3 S31: 0.0453 S32: -0.0004 S33: -0.0339 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 312:337) REMARK 3 ORIGIN FOR THE GROUP (A): -11.8618 -4.3477 2.5707 REMARK 3 T TENSOR REMARK 3 T11: 0.0838 T22: 0.0782 REMARK 3 T33: 0.1275 T12: -0.0094 REMARK 3 T13: -0.0192 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 1.1325 L22: 1.4580 REMARK 3 L33: 0.7797 L12: -0.2575 REMARK 3 L13: -0.3556 L23: 0.0534 REMARK 3 S TENSOR REMARK 3 S11: -0.0291 S12: 0.0432 S13: -0.2075 REMARK 3 S21: -0.0277 S22: 0.0826 S23: 0.0443 REMARK 3 S31: 0.1737 S32: -0.0405 S33: -0.0531 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 338:382) REMARK 3 ORIGIN FOR THE GROUP (A): -22.1057 -1.2636 -2.7407 REMARK 3 T TENSOR REMARK 3 T11: 0.0480 T22: 0.0378 REMARK 3 T33: 0.0578 T12: -0.0030 REMARK 3 T13: -0.0002 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 0.9625 L22: 0.6628 REMARK 3 L33: 1.3099 L12: 0.2742 REMARK 3 L13: -0.0275 L23: 0.3547 REMARK 3 S TENSOR REMARK 3 S11: -0.0224 S12: 0.1584 S13: -0.0786 REMARK 3 S21: -0.1688 S22: -0.0098 S23: 0.0273 REMARK 3 S31: 0.0341 S32: -0.1176 S33: 0.0020 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 383:399) REMARK 3 ORIGIN FOR THE GROUP (A): -10.6545 1.1818 0.6590 REMARK 3 T TENSOR REMARK 3 T11: 0.0659 T22: 0.0390 REMARK 3 T33: 0.0698 T12: -0.0022 REMARK 3 T13: -0.0022 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 1.5850 L22: 0.9024 REMARK 3 L33: 2.9459 L12: 0.0465 REMARK 3 L13: 1.0057 L23: 0.3104 REMARK 3 S TENSOR REMARK 3 S11: 0.0260 S12: 0.1196 S13: -0.0040 REMARK 3 S21: -0.0549 S22: 0.0527 S23: -0.0634 REMARK 3 S31: -0.0078 S32: 0.1225 S33: -0.0380 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4D8E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000070011. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97945 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35933 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.497 REMARK 200 RESOLUTION RANGE LOW (A) : 35.541 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.57300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM NITRATE, 20% PEG3350, REMARK 280 PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 57.30300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.33750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 57.30300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 25.33750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 656 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 702 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 820 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 400 REMARK 465 HIS A 401 REMARK 465 HIS A 402 REMARK 465 HIS A 403 REMARK 465 HIS A 404 REMARK 465 HIS A 405 REMARK 465 HIS A 406 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 934 O HOH A 982 1.96 REMARK 500 O HOH A 918 O HOH A 929 2.10 REMARK 500 O HOH A 923 O HOH A 982 2.17 REMARK 500 O HOH A 778 O HOH A 968 2.18 REMARK 500 O HOH A 835 O HOH A 877 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 238 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 238 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 151 116.82 -39.60 REMARK 500 ASP A 345 18.87 -140.58 REMARK 500 ALA A 371 58.73 -149.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE E64 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4D8B RELATED DB: PDB REMARK 900 HIGH RESOLUTION APO S. PYOGENES SPEB STRUCTURE REMARK 900 RELATED ID: 4D8I RELATED DB: PDB REMARK 900 RELATED ID: 2UZJ RELATED DB: PDB REMARK 900 RELATED ID: 1DKI RELATED DB: PDB REMARK 900 RELATED ID: 2JTC RELATED DB: PDB DBREF 4D8E A 146 398 UNP E0PTS8 E0PTS8_STRPY 146 398 SEQADV 4D8E LEU A 399 UNP E0PTS8 EXPRESSION TAG SEQADV 4D8E GLU A 400 UNP E0PTS8 EXPRESSION TAG SEQADV 4D8E HIS A 401 UNP E0PTS8 EXPRESSION TAG SEQADV 4D8E HIS A 402 UNP E0PTS8 EXPRESSION TAG SEQADV 4D8E HIS A 403 UNP E0PTS8 EXPRESSION TAG SEQADV 4D8E HIS A 404 UNP E0PTS8 EXPRESSION TAG SEQADV 4D8E HIS A 405 UNP E0PTS8 EXPRESSION TAG SEQADV 4D8E HIS A 406 UNP E0PTS8 EXPRESSION TAG SEQRES 1 A 261 GLN PRO VAL VAL LYS SER LEU LEU ASN SER LYS GLY ILE SEQRES 2 A 261 HIS TYR ASN GLN GLY ASN PRO TYR ASN LEU LEU THR PRO SEQRES 3 A 261 VAL ILE GLU LYS VAL LYS PRO GLY GLU GLN SER PHE VAL SEQRES 4 A 261 GLY GLN HIS ALA ALA THR GLY CYS VAL ALA THR ALA THR SEQRES 5 A 261 ALA GLN ILE MET LYS TYR HIS ASN TYR PRO ASN LYS GLY SEQRES 6 A 261 LEU LYS ASP TYR THR TYR THR LEU SER SER ASN ASN PRO SEQRES 7 A 261 TYR PHE ASN HIS PRO LYS ASN LEU PHE ALA ALA ILE SER SEQRES 8 A 261 THR ARG GLN TYR ASN TRP ASN ASN ILE LEU PRO THR TYR SEQRES 9 A 261 SER GLY ARG GLU SER ASN VAL GLN LYS MET ALA ILE SER SEQRES 10 A 261 GLU LEU MET ALA ASP VAL GLY ILE SER VAL ASP MET ASP SEQRES 11 A 261 TYR GLY PRO SER SER GLY SER ALA GLY SER SER ARG VAL SEQRES 12 A 261 GLN ARG ALA LEU LYS GLU ASN PHE GLY TYR ASN GLN SER SEQRES 13 A 261 VAL HIS GLN ILE ASN ARG SER ASP PHE SER LYS GLN ASP SEQRES 14 A 261 TRP GLU ALA GLN ILE ASP LYS GLU LEU SER GLN ASN GLN SEQRES 15 A 261 PRO VAL TYR TYR GLN GLY VAL GLY LYS VAL GLY GLY HIS SEQRES 16 A 261 ALA PHE VAL ILE ASP GLY ALA ASP GLY ARG ASN PHE TYR SEQRES 17 A 261 HIS VAL ASN TRP GLY TRP GLY GLY VAL SER ASP GLY PHE SEQRES 18 A 261 PHE ARG LEU ASP ALA LEU ASN PRO SER ALA LEU GLY THR SEQRES 19 A 261 GLY GLY GLY ALA GLY GLY PHE ASN GLY TYR GLN SER ALA SEQRES 20 A 261 VAL VAL GLY ILE LYS PRO LEU GLU HIS HIS HIS HIS HIS SEQRES 21 A 261 HIS HET E64 A 501 25 HET NO3 A 502 4 HET NO3 A 503 4 HETNAM E64 N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO- HETNAM 2 E64 BUTYL]-GUANIDINE HETNAM NO3 NITRATE ION FORMUL 2 E64 C15 H30 N5 O5 1+ FORMUL 3 NO3 2(N O3 1-) FORMUL 5 HOH *383(H2 O) HELIX 1 1 SER A 151 LYS A 156 1 6 HELIX 2 2 GLY A 191 ASN A 205 1 15 HELIX 3 3 ALA A 234 ARG A 238 5 5 HELIX 4 4 SER A 254 VAL A 272 1 19 HELIX 5 5 GLY A 284 ASN A 295 1 12 HELIX 6 6 SER A 308 PHE A 310 5 3 HELIX 7 7 SER A 311 GLN A 325 1 15 SHEET 1 A 5 VAL A 148 VAL A 149 0 SHEET 2 A 5 GLY A 338 ASP A 348 -1 O ALA A 347 N VAL A 149 SHEET 3 A 5 VAL A 329 GLY A 335 -1 N TYR A 331 O PHE A 342 SHEET 4 A 5 GLY A 388 VAL A 394 -1 O GLY A 388 N VAL A 334 SHEET 5 A 5 HIS A 303 ASN A 306 -1 N ILE A 305 O ALA A 392 SHEET 1 B 4 VAL A 148 VAL A 149 0 SHEET 2 B 4 GLY A 338 ASP A 348 -1 O ALA A 347 N VAL A 149 SHEET 3 B 4 TYR A 353 ASN A 356 -1 O ASN A 356 N VAL A 343 SHEET 4 B 4 GLY A 365 PHE A 367 -1 O PHE A 367 N TYR A 353 SHEET 1 C 2 TYR A 214 THR A 217 0 SHEET 2 C 2 ASN A 230 ALA A 233 -1 O LEU A 231 N TYR A 216 LINK SG CYS A 192 C2 E64 A 501 1555 1555 1.95 CISPEP 1 ASN A 164 PRO A 165 0 4.43 CISPEP 2 TYR A 206 PRO A 207 0 4.21 CISPEP 3 HIS A 227 PRO A 228 0 -2.94 SITE 1 AC1 19 GLN A 162 CYS A 192 VAL A 193 ASP A 273 SITE 2 AC1 19 SER A 280 GLY A 281 SER A 282 ARG A 287 SITE 3 AC1 19 GLY A 333 GLY A 339 HIS A 340 HOH A 641 SITE 4 AC1 19 HOH A 644 HOH A 645 HOH A 786 HOH A 787 SITE 5 AC1 19 HOH A 912 HOH A 931 HOH A 943 SITE 1 AC2 9 ASN A 164 PRO A 165 LYS A 258 PHE A 367 SITE 2 AC2 9 ASN A 373 SER A 375 HOH A 795 HOH A 800 SITE 3 AC2 9 HOH A 891 SITE 1 AC3 6 GLY A 335 LYS A 336 GLY A 384 GLY A 385 SITE 2 AC3 6 ASN A 387 HOH A 822 CRYST1 114.606 50.675 37.384 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008726 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019734 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026749 0.00000