HEADER HYDROLASE/HYDROLASE INHIBITOR 10-JAN-12 4D8I TITLE HIGH RESOLUTION STRUCTURES OF MONOMERIC S. PYOGENES SPEB REVEALS ROLE TITLE 2 OF GLYCINE-RICH ACTIVE SITE LOOP COMPND MOL_ID: 1; COMPND 2 MOLECULE: STREPTOPAIN; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.22.10; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ACE-AEIK-CHO ALDEHYDE (BOUND FORM); COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PYOGENES; SOURCE 3 ORGANISM_TAXID: 864568; SOURCE 4 STRAIN: ATCC 10782; SOURCE 5 GENE: HMPREF0841_0152, SPEB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BL21(DE3)PLYSS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET23B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES KEYWDS PAPAIN FOLD, CYSTEINE PROTEASE, SECRETED, HYDROLASE-HYDROLASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.E.GONZALEZ,D.W.WOLAN REVDAT 5 26-MAR-25 4D8I 1 REMARK SEQADV LINK REVDAT 4 27-FEB-13 4D8I 1 SEQRES DBREF SITE SOURCE REVDAT 4 2 1 COMPND REMARK REVDAT 3 01-AUG-12 4D8I 1 JRNL REVDAT 2 13-JUN-12 4D8I 1 JRNL REVDAT 1 06-JUN-12 4D8I 0 JRNL AUTH G.E.GONZALEZ-PAEZ,D.W.WOLAN JRNL TITL ULTRAHIGH AND HIGH RESOLUTION STRUCTURES AND MUTATIONAL JRNL TITL 2 ANALYSIS OF MONOMERIC STREPTOCOCCUS PYOGENES SPEB REVEAL A JRNL TITL 3 FUNCTIONAL ROLE FOR THE GLYCINE-RICH C-TERMINAL LOOP. JRNL REF J.BIOL.CHEM. V. 287 24412 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22645124 JRNL DOI 10.1074/JBC.M112.361576 REMARK 2 REMARK 2 RESOLUTION. 1.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 44934 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2270 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.6297 - 3.4688 0.98 2864 147 0.1418 0.1687 REMARK 3 2 3.4688 - 2.7536 0.99 2775 128 0.1399 0.1521 REMARK 3 3 2.7536 - 2.4056 0.99 2724 139 0.1498 0.1760 REMARK 3 4 2.4056 - 2.1857 1.00 2699 161 0.1462 0.1650 REMARK 3 5 2.1857 - 2.0291 1.00 2728 147 0.1422 0.1610 REMARK 3 6 2.0291 - 1.9095 1.00 2695 143 0.1430 0.1850 REMARK 3 7 1.9095 - 1.8138 1.00 2694 144 0.1524 0.1829 REMARK 3 8 1.8138 - 1.7349 0.99 2652 144 0.1605 0.1790 REMARK 3 9 1.7349 - 1.6681 1.00 2697 148 0.1688 0.2247 REMARK 3 10 1.6681 - 1.6105 1.00 2688 141 0.1854 0.2248 REMARK 3 11 1.6105 - 1.5602 1.00 2648 154 0.1933 0.2095 REMARK 3 12 1.5602 - 1.5156 1.00 2679 144 0.2097 0.2827 REMARK 3 13 1.5156 - 1.4757 0.98 2592 152 0.2328 0.2758 REMARK 3 14 1.4757 - 1.4397 0.91 2426 134 0.2629 0.2659 REMARK 3 15 1.4397 - 1.4069 1.00 2698 133 0.2731 0.3165 REMARK 3 16 1.4069 - 1.3770 0.90 2405 111 0.2774 0.3025 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.73 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 45.13 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.49630 REMARK 3 B22 (A**2) : -0.62940 REMARK 3 B33 (A**2) : 1.12580 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 2078 REMARK 3 ANGLE : 1.633 2818 REMARK 3 CHIRALITY : 0.109 290 REMARK 3 PLANARITY : 0.010 376 REMARK 3 DIHEDRAL : 12.461 750 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 146:204) REMARK 3 ORIGIN FOR THE GROUP (A): 20.6764 -13.8433 2.9657 REMARK 3 T TENSOR REMARK 3 T11: 0.0696 T22: 0.0774 REMARK 3 T33: 0.0407 T12: 0.0039 REMARK 3 T13: -0.0012 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.3396 L22: 0.3780 REMARK 3 L33: 0.3248 L12: 0.0563 REMARK 3 L13: -0.0527 L23: 0.1553 REMARK 3 S TENSOR REMARK 3 S11: -0.0201 S12: 0.0296 S13: 0.0025 REMARK 3 S21: -0.0339 S22: 0.0102 S23: -0.0198 REMARK 3 S31: 0.0031 S32: 0.0197 S33: 0.0069 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 205:237) REMARK 3 ORIGIN FOR THE GROUP (A): 7.7564 -22.7594 4.6013 REMARK 3 T TENSOR REMARK 3 T11: 0.0725 T22: 0.0675 REMARK 3 T33: 0.0796 T12: 0.0059 REMARK 3 T13: -0.0030 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 0.7265 L22: 0.5499 REMARK 3 L33: 0.3169 L12: 0.2879 REMARK 3 L13: 0.0416 L23: 0.2523 REMARK 3 S TENSOR REMARK 3 S11: 0.0129 S12: 0.0175 S13: -0.0827 REMARK 3 S21: 0.0144 S22: -0.0253 S23: -0.0113 REMARK 3 S31: 0.0684 S32: -0.0770 S33: 0.0027 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 238:254) REMARK 3 ORIGIN FOR THE GROUP (A): 23.5783 -16.4432 16.0876 REMARK 3 T TENSOR REMARK 3 T11: 0.0837 T22: 0.0814 REMARK 3 T33: 0.0507 T12: 0.0160 REMARK 3 T13: -0.0002 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 1.2820 L22: 1.2695 REMARK 3 L33: 1.0629 L12: 0.1080 REMARK 3 L13: -0.0919 L23: -0.0062 REMARK 3 S TENSOR REMARK 3 S11: -0.0191 S12: -0.2062 S13: -0.0113 REMARK 3 S21: 0.0185 S22: -0.0092 S23: -0.0687 REMARK 3 S31: -0.0043 S32: 0.0654 S33: 0.0294 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 255:272) REMARK 3 ORIGIN FOR THE GROUP (A): 18.0359 -19.6645 10.2837 REMARK 3 T TENSOR REMARK 3 T11: 0.0715 T22: 0.0687 REMARK 3 T33: 0.0516 T12: 0.0062 REMARK 3 T13: 0.0021 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 2.1146 L22: 0.1436 REMARK 3 L33: 0.8020 L12: -0.2701 REMARK 3 L13: 1.1049 L23: -0.2697 REMARK 3 S TENSOR REMARK 3 S11: -0.0055 S12: -0.0260 S13: -0.0353 REMARK 3 S21: 0.0801 S22: -0.0054 S23: -0.0175 REMARK 3 S31: 0.0653 S32: 0.0441 S33: 0.0026 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 273:311) REMARK 3 ORIGIN FOR THE GROUP (A): 6.0230 -7.8598 3.6417 REMARK 3 T TENSOR REMARK 3 T11: 0.0624 T22: 0.0688 REMARK 3 T33: 0.0660 T12: 0.0016 REMARK 3 T13: 0.0109 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 0.3199 L22: 0.5664 REMARK 3 L33: 0.1843 L12: -0.1638 REMARK 3 L13: -0.0516 L23: -0.0718 REMARK 3 S TENSOR REMARK 3 S11: 0.0007 S12: -0.0125 S13: 0.0009 REMARK 3 S21: -0.0028 S22: 0.0480 S23: 0.0768 REMARK 3 S31: -0.0180 S32: 0.0091 S33: -0.0447 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 312:337) REMARK 3 ORIGIN FOR THE GROUP (A): 11.8734 4.3269 2.5546 REMARK 3 T TENSOR REMARK 3 T11: 0.0742 T22: 0.0699 REMARK 3 T33: 0.0696 T12: 0.0003 REMARK 3 T13: 0.0133 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.5849 L22: 0.8191 REMARK 3 L33: 0.3634 L12: -0.0723 REMARK 3 L13: 0.2683 L23: 0.0507 REMARK 3 S TENSOR REMARK 3 S11: -0.0144 S12: -0.0086 S13: 0.1360 REMARK 3 S21: 0.0138 S22: 0.0301 S23: -0.0340 REMARK 3 S31: -0.0529 S32: -0.0007 S33: -0.0121 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 338:356) REMARK 3 ORIGIN FOR THE GROUP (A): 19.9484 3.6836 0.9926 REMARK 3 T TENSOR REMARK 3 T11: 0.0759 T22: 0.0771 REMARK 3 T33: 0.0734 T12: -0.0075 REMARK 3 T13: 0.0029 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 0.6165 L22: 0.9371 REMARK 3 L33: 1.2575 L12: -0.3349 REMARK 3 L13: 0.1435 L23: 0.2645 REMARK 3 S TENSOR REMARK 3 S11: -0.0321 S12: 0.0437 S13: 0.1297 REMARK 3 S21: -0.0764 S22: 0.0113 S23: -0.1320 REMARK 3 S31: -0.1155 S32: 0.0523 S33: 0.0115 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 357:382) REMARK 3 ORIGIN FOR THE GROUP (A): 23.8711 -0.6770 -5.7178 REMARK 3 T TENSOR REMARK 3 T11: 0.0435 T22: 0.0520 REMARK 3 T33: 0.0638 T12: -0.0048 REMARK 3 T13: 0.0050 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.6309 L22: 0.2483 REMARK 3 L33: 1.4667 L12: 0.1535 REMARK 3 L13: -0.1762 L23: -0.1834 REMARK 3 S TENSOR REMARK 3 S11: -0.0205 S12: 0.1051 S13: -0.0467 REMARK 3 S21: -0.1534 S22: 0.0046 S23: -0.0114 REMARK 3 S31: 0.0782 S32: 0.1216 S33: 0.0176 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 383:399) REMARK 3 ORIGIN FOR THE GROUP (A): 10.5058 -1.0966 1.3606 REMARK 3 T TENSOR REMARK 3 T11: 0.0516 T22: 0.0397 REMARK 3 T33: 0.0421 T12: -0.0001 REMARK 3 T13: 0.0025 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 1.1813 L22: 0.7148 REMARK 3 L33: 1.9122 L12: -0.0104 REMARK 3 L13: -0.6628 L23: -0.0133 REMARK 3 S TENSOR REMARK 3 S11: -0.0238 S12: 0.0610 S13: 0.0133 REMARK 3 S21: 0.0207 S22: 0.0539 S23: -0.0179 REMARK 3 S31: 0.0055 S32: -0.1444 S33: -0.0344 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 2:4) REMARK 3 ORIGIN FOR THE GROUP (A): 10.4954 -12.0478 -7.6975 REMARK 3 T TENSOR REMARK 3 T11: 0.1457 T22: 0.1237 REMARK 3 T33: 0.0943 T12: -0.0138 REMARK 3 T13: -0.0355 T23: -0.0212 REMARK 3 L TENSOR REMARK 3 L11: 5.6282 L22: 2.3678 REMARK 3 L33: 2.5502 L12: 1.5222 REMARK 3 L13: -0.0247 L23: -2.2401 REMARK 3 S TENSOR REMARK 3 S11: -0.1081 S12: 0.4522 S13: -0.3040 REMARK 3 S21: -0.4555 S22: 0.0904 S23: 0.0810 REMARK 3 S31: 0.2006 S32: -0.0897 S33: 0.0256 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4D8I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000070015. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.71941 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45738 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.377 REMARK 200 RESOLUTION RANGE LOW (A) : 35.618 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.72900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15 M SODIUM NITRATE, 26% PEG3350, PH REMARK 280 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 57.45350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.06850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 57.45350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 25.06850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 615 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 668 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 800 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 THE STARTING MOLECULE OF THIS INHIBITOR IS ALDEHYDE ACE-AEIK-CHO REMARK 400 REMARK 400 THE ACE-AEIK-CHO ALDEHYDE (BOUND FORM) IS PEPTIDE-LIKE, A MEMBER OF REMARK 400 ENZYME INHIBITOR CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: ACE-AEIK-CHO ALDEHYDE (BOUND FORM) REMARK 400 CHAIN: B REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: NULL REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 400 REMARK 465 HIS A 401 REMARK 465 HIS A 402 REMARK 465 HIS A 403 REMARK 465 HIS A 404 REMARK 465 HIS A 405 REMARK 465 HIS A 406 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 968 O HOH A 969 2.14 REMARK 500 OE1 GLU A 294 O HOH A 945 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 290 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 151 114.75 -38.21 REMARK 500 SER A 363 -1.20 69.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN B OF ACE-AEIK-CHO REMARK 800 ALDEHYDE (BOUND FORM) REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4D8B RELATED DB: PDB REMARK 900 HIGH RESOLUTION APO S. PYOGENES SPEB STRUCTURE REMARK 900 RELATED ID: 4D8E RELATED DB: PDB REMARK 900 S. PYOGENES SPEB IN COMPLEX WITH E64 REMARK 900 RELATED ID: 2UZJ RELATED DB: PDB REMARK 900 RELATED ID: 1DKI RELATED DB: PDB REMARK 900 RELATED ID: 2JTC RELATED DB: PDB DBREF 4D8I A 146 398 UNP E0PTS8 E0PTS8_STRPY 146 398 DBREF 4D8I B 1 5 PDB 4D8I 4D8I 1 5 SEQADV 4D8I LEU A 399 UNP E0PTS8 EXPRESSION TAG SEQADV 4D8I GLU A 400 UNP E0PTS8 EXPRESSION TAG SEQADV 4D8I HIS A 401 UNP E0PTS8 EXPRESSION TAG SEQADV 4D8I HIS A 402 UNP E0PTS8 EXPRESSION TAG SEQADV 4D8I HIS A 403 UNP E0PTS8 EXPRESSION TAG SEQADV 4D8I HIS A 404 UNP E0PTS8 EXPRESSION TAG SEQADV 4D8I HIS A 405 UNP E0PTS8 EXPRESSION TAG SEQADV 4D8I HIS A 406 UNP E0PTS8 EXPRESSION TAG SEQRES 1 A 261 GLN PRO VAL VAL LYS SER LEU LEU ASN SER LYS GLY ILE SEQRES 2 A 261 HIS TYR ASN GLN GLY ASN PRO TYR ASN LEU LEU THR PRO SEQRES 3 A 261 VAL ILE GLU LYS VAL LYS PRO GLY GLU GLN SER PHE VAL SEQRES 4 A 261 GLY GLN HIS ALA ALA THR GLY CYS VAL ALA THR ALA THR SEQRES 5 A 261 ALA GLN ILE MET LYS TYR HIS ASN TYR PRO ASN LYS GLY SEQRES 6 A 261 LEU LYS ASP TYR THR TYR THR LEU SER SER ASN ASN PRO SEQRES 7 A 261 TYR PHE ASN HIS PRO LYS ASN LEU PHE ALA ALA ILE SER SEQRES 8 A 261 THR ARG GLN TYR ASN TRP ASN ASN ILE LEU PRO THR TYR SEQRES 9 A 261 SER GLY ARG GLU SER ASN VAL GLN LYS MET ALA ILE SER SEQRES 10 A 261 GLU LEU MET ALA ASP VAL GLY ILE SER VAL ASP MET ASP SEQRES 11 A 261 TYR GLY PRO SER SER GLY SER ALA GLY SER SER ARG VAL SEQRES 12 A 261 GLN ARG ALA LEU LYS GLU ASN PHE GLY TYR ASN GLN SER SEQRES 13 A 261 VAL HIS GLN ILE ASN ARG SER ASP PHE SER LYS GLN ASP SEQRES 14 A 261 TRP GLU ALA GLN ILE ASP LYS GLU LEU SER GLN ASN GLN SEQRES 15 A 261 PRO VAL TYR TYR GLN GLY VAL GLY LYS VAL GLY GLY HIS SEQRES 16 A 261 ALA PHE VAL ILE ASP GLY ALA ASP GLY ARG ASN PHE TYR SEQRES 17 A 261 HIS VAL ASN TRP GLY TRP GLY GLY VAL SER ASP GLY PHE SEQRES 18 A 261 PHE ARG LEU ASP ALA LEU ASN PRO SER ALA LEU GLY THR SEQRES 19 A 261 GLY GLY GLY ALA GLY GLY PHE ASN GLY TYR GLN SER ALA SEQRES 20 A 261 VAL VAL GLY ILE LYS PRO LEU GLU HIS HIS HIS HIS HIS SEQRES 21 A 261 HIS SEQRES 1 B 5 ACE ALA GLU ILE LYJ HET ACE B 1 3 HET LYJ B 5 10 HET NO3 A 501 4 HETNAM ACE ACETYL GROUP HETNAM LYJ (2S)-2,6-DIAMINOHEXAN-1-OL HETNAM NO3 NITRATE ION FORMUL 2 ACE C2 H4 O FORMUL 2 LYJ C6 H16 N2 O FORMUL 3 NO3 N O3 1- FORMUL 4 HOH *377(H2 O) HELIX 1 1 SER A 151 LYS A 156 1 6 HELIX 2 2 GLY A 191 ASN A 205 1 15 HELIX 3 3 ALA A 234 ARG A 238 5 5 HELIX 4 4 SER A 254 VAL A 272 1 19 HELIX 5 5 GLY A 284 ASN A 295 1 12 HELIX 6 6 SER A 308 PHE A 310 5 3 HELIX 7 7 SER A 311 GLN A 325 1 15 SHEET 1 A 5 VAL A 148 VAL A 149 0 SHEET 2 A 5 GLY A 338 ASP A 348 -1 O ALA A 347 N VAL A 149 SHEET 3 A 5 VAL A 329 GLY A 335 -1 N TYR A 331 O PHE A 342 SHEET 4 A 5 GLY A 388 VAL A 394 -1 O GLY A 388 N VAL A 334 SHEET 5 A 5 HIS A 303 ASN A 306 -1 N ILE A 305 O ALA A 392 SHEET 1 B 4 VAL A 148 VAL A 149 0 SHEET 2 B 4 GLY A 338 ASP A 348 -1 O ALA A 347 N VAL A 149 SHEET 3 B 4 TYR A 353 ASN A 356 -1 O ASN A 356 N VAL A 343 SHEET 4 B 4 GLY A 365 PHE A 367 -1 O PHE A 367 N TYR A 353 SHEET 1 C 2 TYR A 214 THR A 217 0 SHEET 2 C 2 ASN A 230 ALA A 233 -1 O LEU A 231 N TYR A 216 LINK SG CYS A 192 C LYJ B 5 1555 1555 1.87 LINK C ACE B 1 N ALA B 2 1555 1555 1.32 LINK C ILE B 4 N LYJ B 5 1555 1555 1.32 CISPEP 1 ASN A 164 PRO A 165 0 -1.08 CISPEP 2 TYR A 206 PRO A 207 0 4.48 CISPEP 3 HIS A 227 PRO A 228 0 -1.80 SITE 1 AC1 7 ASN A 164 PRO A 165 LYS A 258 ASN A 373 SITE 2 AC1 7 SER A 375 HOH A 727 HOH A 953 SITE 1 AC2 23 GLN A 162 CYS A 192 VAL A 193 ASN A 208 SITE 2 AC2 23 LYS A 209 SER A 279 SER A 280 GLY A 281 SITE 3 AC2 23 SER A 282 ALA A 283 GLN A 332 VAL A 334 SITE 4 AC2 23 GLY A 339 HIS A 340 ALA A 341 HOH A 637 SITE 5 AC2 23 HOH A 736 HOH B 101 HOH B 103 HOH B 105 SITE 6 AC2 23 HOH B 106 HOH B 107 HOH B 108 CRYST1 114.907 50.137 37.463 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008703 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019945 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026693 0.00000