HEADER CELL ADHESION 11-JAN-12 4D90 TITLE CRYSTAL STRUCTURE OF DEL-1 EGF DOMAINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: EGF-LIKE REPEAT AND DISCOIDIN I-LIKE DOMAIN-CONTAINING COMPND 3 PROTEIN 3; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: EGF DOMAINS; COMPND 6 SYNONYM: DEVELOPMENTALLY-REGULATED ENDOTHELIAL CELL LOCUS 1 PROTEIN, COMPND 7 INTEGRIN-BINDING PROTEIN DEL1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DEL-1, DEL1, EDIL3; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: 293 GNTI(-); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PLEXM KEYWDS RGD FINGER, CELL ADHESION, INNATE IMMUNITY, EXTRACELLULAR MATRIX KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Q.CHEN,T.SCHURPF,T.SPRINGER,J.WANG REVDAT 5 13-SEP-23 4D90 1 HETSYN REVDAT 4 29-JUL-20 4D90 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK SITE REVDAT 3 15-NOV-17 4D90 1 REMARK REVDAT 2 02-JAN-13 4D90 1 JRNL REVDAT 1 30-MAY-12 4D90 0 JRNL AUTH T.SCHURPF,Q.CHEN,J.H.LIU,R.WANG,T.A.SPRINGER,J.H.WANG JRNL TITL THE RGD FINGER OF DEL-1 IS A UNIQUE STRUCTURAL FEATURE JRNL TITL 2 CRITICAL FOR INTEGRIN BINDING. JRNL REF FASEB J. V. 26 3412 2012 JRNL REFN ISSN 0892-6638 JRNL PMID 22601780 JRNL DOI 10.1096/FJ.11-202036 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.3_928 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 13233 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 651 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.3232 - 4.4471 1.00 2524 129 0.2036 0.2488 REMARK 3 2 4.4471 - 3.5303 1.00 2515 120 0.1840 0.2591 REMARK 3 3 3.5303 - 3.0842 1.00 2517 140 0.2086 0.2530 REMARK 3 4 3.0842 - 2.8022 1.00 2485 147 0.2198 0.2748 REMARK 3 5 2.8022 - 2.6014 1.00 2541 115 0.2532 0.2994 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 45.78 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.86460 REMARK 3 B22 (A**2) : 8.86460 REMARK 3 B33 (A**2) : -17.72920 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2012 REMARK 3 ANGLE : 1.460 2710 REMARK 3 CHIRALITY : 0.100 289 REMARK 3 PLANARITY : 0.008 373 REMARK 3 DIHEDRAL : 16.633 746 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4D90 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000070033. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAR-10; 08-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; APS REMARK 200 BEAMLINE : 24-ID-C; 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794; 0.9794 REMARK 200 MONOCHROMATOR : CRYO-COOLED SI(III) DOUBLE REMARK 200 CRYSTAL; ROSENBAUM-ROCK HIGH- REMARK 200 RESOLUTION DOUBLE CRYSTAL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; ADSC QUANTUM REMARK 200 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13233 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.77700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2VJ3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM ACETATE, 30% PEG 4000, REMARK 280 200 MM AMMONIUM ACETATE, PH 4.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.61467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 18.80733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 24 REMARK 465 ILE A 25 REMARK 465 GLY A 40 REMARK 465 LEU A 41 REMARK 465 ALA A 42 REMARK 465 ASP A 43 REMARK 465 GLY A 44 REMARK 465 GLY A 158 REMARK 465 GLY A 159 REMARK 465 GLY A 160 REMARK 465 HIS A 161 REMARK 465 HIS A 162 REMARK 465 HIS A 163 REMARK 465 HIS A 164 REMARK 465 HIS A 165 REMARK 465 HIS A 166 REMARK 465 ASP B 24 REMARK 465 ILE B 25 REMARK 465 GLY B 40 REMARK 465 LEU B 41 REMARK 465 ALA B 42 REMARK 465 ASP B 43 REMARK 465 GLY B 44 REMARK 465 SER B 45 REMARK 465 GLY B 158 REMARK 465 GLY B 159 REMARK 465 GLY B 160 REMARK 465 HIS B 161 REMARK 465 HIS B 162 REMARK 465 HIS B 163 REMARK 465 HIS B 164 REMARK 465 HIS B 165 REMARK 465 HIS B 166 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS B 31 CB CYS B 48 1.92 REMARK 500 OG1 THR B 73 C2 NGA B 601 2.03 REMARK 500 OG1 THR A 73 C2 NGA A 601 2.11 REMARK 500 ND2 ASN A 140 C2 NAG A 602 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 33 -4.40 64.22 REMARK 500 GLU A 70 -11.17 84.34 REMARK 500 GLU A 148 -13.64 82.20 REMARK 500 PRO B 28 -152.44 -35.04 REMARK 500 GLU B 70 -7.42 69.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 27 PRO A 28 -130.95 REMARK 500 ASP B 27 PRO B 28 -132.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PRO B 28 10.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 604 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 119 OD1 REMARK 620 2 ILE A 120 O 86.9 REMARK 620 3 GLU A 122 OE1 134.3 87.3 REMARK 620 4 ASP A 136 OD2 100.3 86.7 124.6 REMARK 620 5 ASP A 136 OD1 145.9 82.3 77.6 47.0 REMARK 620 6 LEU A 137 O 112.0 156.0 69.0 103.4 88.7 REMARK 620 7 HOH A 701 O 64.7 85.6 69.7 163.4 145.5 89.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 604 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 119 OD1 REMARK 620 2 ILE B 120 O 81.2 REMARK 620 3 GLU B 122 OE1 123.4 71.2 REMARK 620 4 ASP B 136 OD1 135.5 80.2 87.6 REMARK 620 5 ASP B 136 OD2 93.9 91.8 134.1 47.0 REMARK 620 6 LEU B 137 O 119.5 153.8 83.5 92.7 101.7 REMARK 620 7 HOH B 701 O 69.1 80.1 58.3 144.6 162.0 92.3 REMARK 620 N 1 2 3 4 5 6 DBREF 4D90 A 24 157 UNP O43854 EDIL3_HUMAN 24 157 DBREF 4D90 B 24 157 UNP O43854 EDIL3_HUMAN 24 157 SEQADV 4D90 GLY A 158 UNP O43854 EXPRESSION TAG SEQADV 4D90 GLY A 159 UNP O43854 EXPRESSION TAG SEQADV 4D90 GLY A 160 UNP O43854 EXPRESSION TAG SEQADV 4D90 HIS A 161 UNP O43854 EXPRESSION TAG SEQADV 4D90 HIS A 162 UNP O43854 EXPRESSION TAG SEQADV 4D90 HIS A 163 UNP O43854 EXPRESSION TAG SEQADV 4D90 HIS A 164 UNP O43854 EXPRESSION TAG SEQADV 4D90 HIS A 165 UNP O43854 EXPRESSION TAG SEQADV 4D90 HIS A 166 UNP O43854 EXPRESSION TAG SEQADV 4D90 GLY B 158 UNP O43854 EXPRESSION TAG SEQADV 4D90 GLY B 159 UNP O43854 EXPRESSION TAG SEQADV 4D90 GLY B 160 UNP O43854 EXPRESSION TAG SEQADV 4D90 HIS B 161 UNP O43854 EXPRESSION TAG SEQADV 4D90 HIS B 162 UNP O43854 EXPRESSION TAG SEQADV 4D90 HIS B 163 UNP O43854 EXPRESSION TAG SEQADV 4D90 HIS B 164 UNP O43854 EXPRESSION TAG SEQADV 4D90 HIS B 165 UNP O43854 EXPRESSION TAG SEQADV 4D90 HIS B 166 UNP O43854 EXPRESSION TAG SEQRES 1 A 143 ASP ILE CYS ASP PRO ASN PRO CYS GLU ASN GLY GLY ILE SEQRES 2 A 143 CYS LEU PRO GLY LEU ALA ASP GLY SER PHE SER CYS GLU SEQRES 3 A 143 CYS PRO ASP GLY PHE THR ASP PRO ASN CYS SER SER VAL SEQRES 4 A 143 VAL GLU VAL ALA SER ASP GLU GLU GLU PRO THR SER ALA SEQRES 5 A 143 GLY PRO CYS THR PRO ASN PRO CYS HIS ASN GLY GLY THR SEQRES 6 A 143 CYS GLU ILE SER GLU ALA TYR ARG GLY ASP THR PHE ILE SEQRES 7 A 143 GLY TYR VAL CYS LYS CYS PRO ARG GLY PHE ASN GLY ILE SEQRES 8 A 143 HIS CYS GLN HIS ASN ILE ASN GLU CYS GLU VAL GLU PRO SEQRES 9 A 143 CYS LYS ASN GLY GLY ILE CYS THR ASP LEU VAL ALA ASN SEQRES 10 A 143 TYR SER CYS GLU CYS PRO GLY GLU PHE MET GLY ARG ASN SEQRES 11 A 143 CYS GLN TYR LYS GLY GLY GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 143 ASP ILE CYS ASP PRO ASN PRO CYS GLU ASN GLY GLY ILE SEQRES 2 B 143 CYS LEU PRO GLY LEU ALA ASP GLY SER PHE SER CYS GLU SEQRES 3 B 143 CYS PRO ASP GLY PHE THR ASP PRO ASN CYS SER SER VAL SEQRES 4 B 143 VAL GLU VAL ALA SER ASP GLU GLU GLU PRO THR SER ALA SEQRES 5 B 143 GLY PRO CYS THR PRO ASN PRO CYS HIS ASN GLY GLY THR SEQRES 6 B 143 CYS GLU ILE SER GLU ALA TYR ARG GLY ASP THR PHE ILE SEQRES 7 B 143 GLY TYR VAL CYS LYS CYS PRO ARG GLY PHE ASN GLY ILE SEQRES 8 B 143 HIS CYS GLN HIS ASN ILE ASN GLU CYS GLU VAL GLU PRO SEQRES 9 B 143 CYS LYS ASN GLY GLY ILE CYS THR ASP LEU VAL ALA ASN SEQRES 10 B 143 TYR SER CYS GLU CYS PRO GLY GLU PHE MET GLY ARG ASN SEQRES 11 B 143 CYS GLN TYR LYS GLY GLY GLY HIS HIS HIS HIS HIS HIS MODRES 4D90 THR B 88 THR GLYCOSYLATION SITE MODRES 4D90 THR A 88 THR GLYCOSYLATION SITE MODRES 4D90 THR B 73 THR GLYCOSYLATION SITE MODRES 4D90 THR A 73 THR GLYCOSYLATION SITE MODRES 4D90 ASN B 140 ASN GLYCOSYLATION SITE MODRES 4D90 ASN A 140 ASN GLYCOSYLATION SITE HET NGA A 601 14 HET NAG A 602 14 HET FUC A 603 10 HET CA A 604 1 HET NGA B 601 14 HET NAG B 602 14 HET FUC B 603 10 HET CA B 604 1 HETNAM NGA 2-ACETAMIDO-2-DEOXY-BETA-D-GALACTOPYRANOSE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM CA CALCIUM ION HETSYN NGA N-ACETYL-BETA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 NGA BETA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 NGA ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-D-GALACTOSAMINE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 3 NGA 2(C8 H15 N O6) FORMUL 4 NAG 2(C8 H15 N O6) FORMUL 5 FUC 2(C6 H12 O5) FORMUL 6 CA 2(CA 2+) FORMUL 11 HOH *50(H2 O) HELIX 1 1 CYS A 31 GLY A 35 5 5 HELIX 2 2 CYS B 31 GLY B 35 5 5 HELIX 3 3 VAL B 65 GLU B 69 5 5 SHEET 1 A 2 ILE A 36 LEU A 38 0 SHEET 2 A 2 SER A 47 GLU A 49 -1 O GLU A 49 N ILE A 36 SHEET 1 B 2 THR A 88 ILE A 91 0 SHEET 2 B 2 TYR A 103 LYS A 106 -1 O LYS A 106 N THR A 88 SHEET 1 C 2 TYR A 95 ARG A 96 0 SHEET 2 C 2 THR A 99 PHE A 100 -1 O THR A 99 N ARG A 96 SHEET 1 D 2 PHE A 111 ASN A 112 0 SHEET 2 D 2 HIS A 118 ASN A 119 -1 O HIS A 118 N ASN A 112 SHEET 1 E 2 ILE A 133 LEU A 137 0 SHEET 2 E 2 ASN A 140 GLU A 144 -1 O ASN A 140 N LEU A 137 SHEET 1 F 2 ILE B 36 LEU B 38 0 SHEET 2 F 2 SER B 47 GLU B 49 -1 O GLU B 49 N ILE B 36 SHEET 1 G 2 PHE B 54 THR B 55 0 SHEET 2 G 2 SER B 61 VAL B 62 -1 O SER B 61 N THR B 55 SHEET 1 H 2 THR B 88 ILE B 91 0 SHEET 2 H 2 TYR B 103 LYS B 106 -1 O LYS B 106 N THR B 88 SHEET 1 I 2 TYR B 95 ARG B 96 0 SHEET 2 I 2 THR B 99 PHE B 100 -1 O THR B 99 N ARG B 96 SHEET 1 J 2 PHE B 111 ASN B 112 0 SHEET 2 J 2 HIS B 118 ASN B 119 -1 O HIS B 118 N ASN B 112 SHEET 1 K 2 ILE B 133 LEU B 137 0 SHEET 2 K 2 ASN B 140 GLU B 144 -1 O GLU B 144 N ILE B 133 SSBOND 1 CYS A 26 CYS A 37 1555 1555 2.03 SSBOND 2 CYS A 31 CYS A 48 1555 1555 2.03 SSBOND 3 CYS A 50 CYS A 59 1555 1555 2.04 SSBOND 4 CYS A 78 CYS A 89 1555 1555 2.07 SSBOND 5 CYS A 83 CYS A 105 1555 1555 2.03 SSBOND 6 CYS A 107 CYS A 116 1555 1555 2.11 SSBOND 7 CYS A 123 CYS A 134 1555 1555 2.07 SSBOND 8 CYS A 128 CYS A 143 1555 1555 2.04 SSBOND 9 CYS A 145 CYS A 154 1555 1555 2.08 SSBOND 10 CYS B 26 CYS B 37 1555 1555 2.03 SSBOND 11 CYS B 31 CYS B 48 1555 1555 2.03 SSBOND 12 CYS B 50 CYS B 59 1555 1555 2.04 SSBOND 13 CYS B 78 CYS B 89 1555 1555 2.07 SSBOND 14 CYS B 83 CYS B 105 1555 1555 2.04 SSBOND 15 CYS B 107 CYS B 116 1555 1555 2.10 SSBOND 16 CYS B 123 CYS B 134 1555 1555 2.08 SSBOND 17 CYS B 128 CYS B 143 1555 1555 2.03 SSBOND 18 CYS B 145 CYS B 154 1555 1555 2.08 LINK OG1 THR A 73 C1 NGA A 601 1555 1555 1.45 LINK OG1 THR A 88 C1 FUC A 603 1555 1555 1.41 LINK ND2 ASN A 140 C1 NAG A 602 1555 1555 1.45 LINK OG1 THR B 73 C1 NGA B 601 1555 1555 1.45 LINK OG1 THR B 88 C1 FUC B 603 1555 1555 1.41 LINK ND2 ASN B 140 C1 NAG B 602 1555 1555 1.45 LINK OD1 ASN A 119 CA CA A 604 1555 1555 2.70 LINK O ILE A 120 CA CA A 604 1555 1555 2.63 LINK OE1 GLU A 122 CA CA A 604 1555 1555 2.83 LINK OD2 ASP A 136 CA CA A 604 1555 1555 2.77 LINK OD1 ASP A 136 CA CA A 604 1555 1555 2.81 LINK O LEU A 137 CA CA A 604 1555 1555 2.70 LINK CA CA A 604 O HOH A 701 1555 1555 2.73 LINK OD1 ASN B 119 CA CA B 604 1555 1555 2.62 LINK O ILE B 120 CA CA B 604 1555 1555 2.64 LINK OE1 GLU B 122 CA CA B 604 1555 1555 2.71 LINK OD1 ASP B 136 CA CA B 604 1555 1555 2.76 LINK OD2 ASP B 136 CA CA B 604 1555 1555 2.81 LINK O LEU B 137 CA CA B 604 1555 1555 2.71 LINK CA CA B 604 O HOH B 701 1555 1555 2.80 CISPEP 1 ASP A 56 PRO A 57 0 0.66 CISPEP 2 THR A 79 PRO A 80 0 -12.58 CISPEP 3 ASP B 56 PRO B 57 0 11.62 CISPEP 4 THR B 79 PRO B 80 0 -4.56 CRYST1 82.680 82.680 56.422 90.00 90.00 120.00 P 32 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012095 0.006983 0.000000 0.00000 SCALE2 0.000000 0.013966 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017724 0.00000