HEADER HYDROLASE 11-JAN-12 4D95 OBSLTE 01-FEB-12 4D95 4DI8 TITLE CRYSTAL STRUCTURE OF THE D248A MUTANT OF 2-PYRONE-4,6-DICARBOXYLIC TITLE 2 ACID HYDROLASE FROM SPHINGOMONAS PAUCIMOBILIS COMPLEXED WITH TITLE 3 SUBSTRATE AT PH 8.5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-PYRONE-4,6-DICARBAXYLATE HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 2-PYRONE-4,6-DICARBOXYLIC ACID HYDROLASE; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPHINGOMONAS PAUCIMOBILIS; SOURCE 3 ORGANISM_TAXID: 13689; SOURCE 4 STRAIN: SYK-6; SOURCE 5 GENE: LIGI; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODON+RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BC-PSGX3(BC) KEYWDS STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, NEW YORK KEYWDS 2 STRUCTURAL GENOMIX RESEARCH CONSORTIUM, NYSGXRC, HYDROLASE, PSI- KEYWDS 3 BIOLOGY, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR V.N.MALASHKEVICH,R.TORO,M.E.HOBBS,F.M.RAUSHEL,S.C.ALMO,NEW YORK AUTHOR 2 STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NYSGRC) REVDAT 5 03-OCT-12 4D95 1 OBSLTE REMARK REVDAT 4 23-MAY-12 4D95 1 OBSLTE REVDAT 3 25-APR-12 4D95 1 REMARK REVDAT 2 01-FEB-12 4D95 1 OBSLTE REVDAT 1 25-JAN-12 4D95 0 JRNL AUTH V.N.MALASHKEVICH,R.TORO,M.E.HOBBS,F.M.RAUSHEL,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF THE D248A MUTANT OF JRNL TITL 2 2-PYRONE-4,6-DICARBOXYLIC ACID HYDROLASE FROM SPHINGOMONAS JRNL TITL 3 PAUCIMOBILIS COMPLEXED WITH SUBSTRATE AT PH 8.5 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 53460 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2718 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.81 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.86 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3692 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE SET COUNT : 187 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4620 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 675 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.124 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.112 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.071 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.003 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4868 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6648 ; 1.231 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 600 ; 5.802 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 228 ;33.434 ;23.114 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 748 ;12.170 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;18.243 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 695 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3894 ; 0.006 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2989 ; 0.681 ; 3.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4836 ; 2.278 ;50.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1879 ; 4.844 ;50.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1805 ; 0.885 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -10 A 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 19.3281 11.2779 0.0848 REMARK 3 T TENSOR REMARK 3 T11: 0.0092 T22: 0.0222 REMARK 3 T33: 0.0185 T12: 0.0012 REMARK 3 T13: 0.0050 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 0.8560 L22: 0.6459 REMARK 3 L33: 0.6230 L12: 0.0114 REMARK 3 L13: 0.0764 L23: 0.0001 REMARK 3 S TENSOR REMARK 3 S11: 0.0125 S12: 0.0513 S13: -0.0133 REMARK 3 S21: -0.0056 S22: -0.0364 S23: 0.0874 REMARK 3 S31: -0.0169 S32: -0.0951 S33: 0.0239 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -10 B 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 21.8515 -13.4698 -37.7757 REMARK 3 T TENSOR REMARK 3 T11: 0.0173 T22: 0.0210 REMARK 3 T33: 0.0099 T12: 0.0012 REMARK 3 T13: -0.0017 T23: -0.0089 REMARK 3 L TENSOR REMARK 3 L11: 0.7422 L22: 0.6580 REMARK 3 L33: 0.4235 L12: -0.1104 REMARK 3 L13: -0.0160 L23: -0.0649 REMARK 3 S TENSOR REMARK 3 S11: 0.0230 S12: 0.0216 S13: -0.0095 REMARK 3 S21: -0.0587 S22: -0.0355 S23: 0.0686 REMARK 3 S31: 0.0005 S32: -0.0833 S33: 0.0125 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES: WITH TLS ADDED. HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 4 REMARK 4 4D95 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JAN-12. REMARK 100 THE RCSB ID CODE IS RCSB070038. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53516 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.810 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.33200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 4000, 0.1 M TRIS HCL PH 8.5, REMARK 280 0.2 M NA-ACETATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.06550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 296 REMARK 465 GLY A 297 REMARK 465 HIS A 298 REMARK 465 HIS A 299 REMARK 465 HIS A 300 REMARK 465 HIS A 301 REMARK 465 HIS A 302 REMARK 465 HIS A 303 REMARK 465 MET B 1 REMARK 465 GLU B 296 REMARK 465 GLY B 297 REMARK 465 HIS B 298 REMARK 465 HIS B 299 REMARK 465 HIS B 300 REMARK 465 HIS B 301 REMARK 465 HIS B 302 REMARK 465 HIS B 303 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 214 57.16 71.26 REMARK 500 PRO A 250 30.02 -93.05 REMARK 500 VAL A 283 -69.31 -121.07 REMARK 500 CYS B 214 57.33 73.11 REMARK 500 VAL B 283 -72.92 -122.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 404 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 719 O REMARK 620 2 HOH B 781 O 97.8 REMARK 620 3 HOH B 630 O 172.2 89.8 REMARK 620 4 HOH B 674 O 82.5 86.7 99.9 REMARK 620 5 HOH B 737 O 97.8 90.1 80.2 176.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 741 O REMARK 620 2 HOH B 591 O 97.1 REMARK 620 3 HOH B 701 O 81.1 84.2 REMARK 620 4 HOH B 688 O 101.6 93.9 176.9 REMARK 620 5 HOH B 759 O 89.1 173.7 95.8 85.8 REMARK 620 6 HOH B 783 O 137.8 103.4 65.0 113.2 71.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0GZ A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0GY A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0GZ B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0GY B 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2QAH RELATED DB: PDB REMARK 900 RELATED ID: 4D8L RELATED DB: PDB REMARK 900 RELATED ID: 4D9A RELATED DB: PDB REMARK 900 RELATED ID: 4D9D RELATED DB: PDB REMARK 900 RELATED ID: NYSGXRC-10053D RELATED DB: TARGETTRACK DBREF 4D95 A 4 295 UNP O87170 O87170_PSEPA 2 293 DBREF 4D95 B 4 295 UNP O87170 O87170_PSEPA 2 293 SEQADV 4D95 MET A 1 UNP O87170 EXPRESSION TAG SEQADV 4D95 SER A 2 UNP O87170 EXPRESSION TAG SEQADV 4D95 LEU A 3 UNP O87170 EXPRESSION TAG SEQADV 4D95 ALA A 248 UNP O87170 ASP 246 ENGINEERED MUTATION SEQADV 4D95 GLU A 296 UNP O87170 EXPRESSION TAG SEQADV 4D95 GLY A 297 UNP O87170 EXPRESSION TAG SEQADV 4D95 HIS A 298 UNP O87170 EXPRESSION TAG SEQADV 4D95 HIS A 299 UNP O87170 EXPRESSION TAG SEQADV 4D95 HIS A 300 UNP O87170 EXPRESSION TAG SEQADV 4D95 HIS A 301 UNP O87170 EXPRESSION TAG SEQADV 4D95 HIS A 302 UNP O87170 EXPRESSION TAG SEQADV 4D95 HIS A 303 UNP O87170 EXPRESSION TAG SEQADV 4D95 MET B 1 UNP O87170 EXPRESSION TAG SEQADV 4D95 SER B 2 UNP O87170 EXPRESSION TAG SEQADV 4D95 LEU B 3 UNP O87170 EXPRESSION TAG SEQADV 4D95 ALA B 248 UNP O87170 ASP 246 ENGINEERED MUTATION SEQADV 4D95 GLU B 296 UNP O87170 EXPRESSION TAG SEQADV 4D95 GLY B 297 UNP O87170 EXPRESSION TAG SEQADV 4D95 HIS B 298 UNP O87170 EXPRESSION TAG SEQADV 4D95 HIS B 299 UNP O87170 EXPRESSION TAG SEQADV 4D95 HIS B 300 UNP O87170 EXPRESSION TAG SEQADV 4D95 HIS B 301 UNP O87170 EXPRESSION TAG SEQADV 4D95 HIS B 302 UNP O87170 EXPRESSION TAG SEQADV 4D95 HIS B 303 UNP O87170 EXPRESSION TAG SEQRES 1 A 303 MET SER LEU THR ASN ASP GLU ARG ILE LEU SER TRP ASN SEQRES 2 A 303 GLU THR PRO SER LYS PRO ARG TYR THR PRO PRO PRO GLY SEQRES 3 A 303 ALA ILE ASP ALA HIS CYS HIS VAL PHE GLY PRO MET ALA SEQRES 4 A 303 GLN PHE PRO PHE SER PRO LYS ALA LYS TYR LEU PRO ARG SEQRES 5 A 303 ASP ALA GLY PRO ASP MET LEU PHE ALA LEU ARG ASP HIS SEQRES 6 A 303 LEU GLY PHE ALA ARG ASN VAL ILE VAL GLN ALA SER CYS SEQRES 7 A 303 HIS GLY THR ASP ASN ALA ALA THR LEU ASP ALA ILE ALA SEQRES 8 A 303 ARG ALA GLN GLY LYS ALA ARG GLY ILE ALA VAL VAL ASP SEQRES 9 A 303 PRO ALA ILE ASP GLU ALA GLU LEU ALA ALA LEU HIS GLU SEQRES 10 A 303 GLY GLY MET ARG GLY ILE ARG PHE ASN PHE LEU LYS ARG SEQRES 11 A 303 LEU VAL ASP ASP ALA PRO LYS ASP LYS PHE LEU GLU VAL SEQRES 12 A 303 ALA GLY ARG LEU PRO ALA GLY TRP HIS VAL VAL ILE TYR SEQRES 13 A 303 PHE GLU ALA ASP ILE LEU GLU GLU LEU ARG PRO PHE MET SEQRES 14 A 303 ASP ALA ILE PRO VAL PRO ILE VAL ILE ASP HIS MET GLY SEQRES 15 A 303 ARG PRO ASP VAL ARG GLN GLY PRO ASP GLY ALA ASP MET SEQRES 16 A 303 LYS ALA PHE ARG ARG LEU LEU ASP SER ARG GLU ASP ILE SEQRES 17 A 303 TRP PHE LYS ALA THR CYS PRO ASP ARG LEU ASP PRO ALA SEQRES 18 A 303 GLY PRO PRO TRP ASP ASP PHE ALA ARG SER VAL ALA PRO SEQRES 19 A 303 LEU VAL ALA ASP TYR ALA ASP ARG VAL ILE TRP GLY THR SEQRES 20 A 303 ALA TRP PRO HIS PRO ASN MET GLN ASP ALA ILE PRO ASP SEQRES 21 A 303 ASP GLY LEU VAL VAL ASP MET ILE PRO ARG ILE ALA PRO SEQRES 22 A 303 THR PRO GLU LEU GLN HIS LYS MET LEU VAL THR ASN PRO SEQRES 23 A 303 MET ARG LEU TYR TRP SER GLU GLU MET GLU GLY HIS HIS SEQRES 24 A 303 HIS HIS HIS HIS SEQRES 1 B 303 MET SER LEU THR ASN ASP GLU ARG ILE LEU SER TRP ASN SEQRES 2 B 303 GLU THR PRO SER LYS PRO ARG TYR THR PRO PRO PRO GLY SEQRES 3 B 303 ALA ILE ASP ALA HIS CYS HIS VAL PHE GLY PRO MET ALA SEQRES 4 B 303 GLN PHE PRO PHE SER PRO LYS ALA LYS TYR LEU PRO ARG SEQRES 5 B 303 ASP ALA GLY PRO ASP MET LEU PHE ALA LEU ARG ASP HIS SEQRES 6 B 303 LEU GLY PHE ALA ARG ASN VAL ILE VAL GLN ALA SER CYS SEQRES 7 B 303 HIS GLY THR ASP ASN ALA ALA THR LEU ASP ALA ILE ALA SEQRES 8 B 303 ARG ALA GLN GLY LYS ALA ARG GLY ILE ALA VAL VAL ASP SEQRES 9 B 303 PRO ALA ILE ASP GLU ALA GLU LEU ALA ALA LEU HIS GLU SEQRES 10 B 303 GLY GLY MET ARG GLY ILE ARG PHE ASN PHE LEU LYS ARG SEQRES 11 B 303 LEU VAL ASP ASP ALA PRO LYS ASP LYS PHE LEU GLU VAL SEQRES 12 B 303 ALA GLY ARG LEU PRO ALA GLY TRP HIS VAL VAL ILE TYR SEQRES 13 B 303 PHE GLU ALA ASP ILE LEU GLU GLU LEU ARG PRO PHE MET SEQRES 14 B 303 ASP ALA ILE PRO VAL PRO ILE VAL ILE ASP HIS MET GLY SEQRES 15 B 303 ARG PRO ASP VAL ARG GLN GLY PRO ASP GLY ALA ASP MET SEQRES 16 B 303 LYS ALA PHE ARG ARG LEU LEU ASP SER ARG GLU ASP ILE SEQRES 17 B 303 TRP PHE LYS ALA THR CYS PRO ASP ARG LEU ASP PRO ALA SEQRES 18 B 303 GLY PRO PRO TRP ASP ASP PHE ALA ARG SER VAL ALA PRO SEQRES 19 B 303 LEU VAL ALA ASP TYR ALA ASP ARG VAL ILE TRP GLY THR SEQRES 20 B 303 ALA TRP PRO HIS PRO ASN MET GLN ASP ALA ILE PRO ASP SEQRES 21 B 303 ASP GLY LEU VAL VAL ASP MET ILE PRO ARG ILE ALA PRO SEQRES 22 B 303 THR PRO GLU LEU GLN HIS LYS MET LEU VAL THR ASN PRO SEQRES 23 B 303 MET ARG LEU TYR TRP SER GLU GLU MET GLU GLY HIS HIS SEQRES 24 B 303 HIS HIS HIS HIS HET 0GZ A 401 13 HET ACT A 402 4 HET 0GY A 403 14 HET 0GZ B 401 13 HET ACT B 402 4 HET MG B 403 1 HET MG B 404 1 HET 0GY B 405 14 HETNAM 0GZ 2-OXO-2H-PYRAN-4,6-DICARBOXYLIC ACID HETNAM ACT ACETATE ION HETNAM 0GY (1E,3Z)-4-HYDROXYBUTA-1,3-DIENE-1,2,4-TRICARBOXYLIC HETNAM 2 0GY ACID HETNAM MG MAGNESIUM ION FORMUL 3 0GZ 2(C7 H4 O6) FORMUL 4 ACT 2(C2 H3 O2 1-) FORMUL 5 0GY 2(C7 H6 O7) FORMUL 8 MG 2(MG 2+) FORMUL 11 HOH *675(H2 O) HELIX 1 1 GLY A 55 GLY A 67 1 13 HELIX 2 2 ALA A 76 GLY A 80 5 5 HELIX 3 3 ASN A 83 ALA A 93 1 11 HELIX 4 4 ASP A 108 GLY A 118 1 11 HELIX 5 5 PRO A 136 GLY A 145 1 10 HELIX 6 6 GLU A 158 ASP A 160 5 3 HELIX 7 7 ILE A 161 ILE A 172 1 12 HELIX 8 8 HIS A 180 ARG A 183 5 4 HELIX 9 9 ASP A 185 GLY A 189 5 5 HELIX 10 10 GLY A 192 ASP A 203 1 12 HELIX 11 11 CYS A 214 ASP A 219 1 6 HELIX 12 12 TRP A 225 TYR A 239 1 15 HELIX 13 13 ASP A 260 MET A 267 1 8 HELIX 14 14 MET A 267 ALA A 272 1 6 HELIX 15 15 THR A 274 VAL A 283 1 10 HELIX 16 16 VAL A 283 TRP A 291 1 9 HELIX 17 17 SER A 292 MET A 295 5 4 HELIX 18 18 GLY B 55 GLY B 67 1 13 HELIX 19 19 ALA B 76 GLY B 80 5 5 HELIX 20 20 ASN B 83 ALA B 93 1 11 HELIX 21 21 ASP B 108 GLY B 118 1 11 HELIX 22 22 PRO B 136 GLY B 145 1 10 HELIX 23 23 GLU B 158 ASP B 160 5 3 HELIX 24 24 ILE B 161 ILE B 172 1 12 HELIX 25 25 HIS B 180 ARG B 183 5 4 HELIX 26 26 ASP B 185 GLY B 189 5 5 HELIX 27 27 GLY B 192 ASP B 203 1 12 HELIX 28 28 CYS B 214 ASP B 219 1 6 HELIX 29 29 TRP B 225 TYR B 239 1 15 HELIX 30 30 ASP B 260 MET B 267 1 8 HELIX 31 31 MET B 267 ALA B 272 1 6 HELIX 32 32 THR B 274 VAL B 283 1 10 HELIX 33 33 VAL B 283 TRP B 291 1 9 HELIX 34 34 SER B 292 MET B 295 5 4 SHEET 1 A 8 ILE A 28 CYS A 32 0 SHEET 2 A 8 ARG A 70 VAL A 74 1 O VAL A 74 N CYS A 32 SHEET 3 A 8 ALA A 97 ALA A 101 1 O ARG A 98 N ILE A 73 SHEET 4 A 8 MET A 120 ASN A 126 1 O GLY A 122 N ALA A 101 SHEET 5 A 8 HIS A 152 TYR A 156 1 O VAL A 154 N ILE A 123 SHEET 6 A 8 ILE A 176 ILE A 178 1 O VAL A 177 N ILE A 155 SHEET 7 A 8 ILE A 208 LYS A 211 1 O TRP A 209 N ILE A 176 SHEET 8 A 8 VAL A 243 ILE A 244 1 O ILE A 244 N PHE A 210 SHEET 1 B 8 ILE B 28 CYS B 32 0 SHEET 2 B 8 ARG B 70 VAL B 74 1 O VAL B 74 N CYS B 32 SHEET 3 B 8 ALA B 97 ALA B 101 1 O ARG B 98 N ILE B 73 SHEET 4 B 8 MET B 120 ASN B 126 1 O GLY B 122 N ALA B 101 SHEET 5 B 8 HIS B 152 TYR B 156 1 O VAL B 154 N ILE B 123 SHEET 6 B 8 ILE B 176 ILE B 178 1 O VAL B 177 N ILE B 155 SHEET 7 B 8 ILE B 208 LYS B 211 1 O TRP B 209 N ILE B 176 SHEET 8 B 8 VAL B 243 ILE B 244 1 O ILE B 244 N PHE B 210 LINK MG MG B 404 O HOH B 719 1555 1555 1.99 LINK MG MG B 404 O HOH B 781 1555 1555 1.99 LINK MG MG B 403 O HOH B 741 1555 1555 2.05 LINK MG MG B 404 O HOH B 630 1555 1555 2.06 LINK MG MG B 403 O HOH B 591 1555 1555 2.09 LINK MG MG B 403 O HOH B 701 1555 1555 2.09 LINK MG MG B 404 O HOH B 674 1555 1555 2.13 LINK MG MG B 403 O HOH B 688 1555 1555 2.15 LINK MG MG B 404 O HOH B 737 1555 1555 2.15 LINK MG MG B 403 O HOH B 759 1555 1555 2.25 LINK MG MG B 403 O HOH B 783 1555 1555 2.69 CISPEP 1 GLY A 36 PRO A 37 0 1.32 CISPEP 2 PRO A 223 PRO A 224 0 9.43 CISPEP 3 TRP A 249 PRO A 250 0 7.34 CISPEP 4 GLY B 36 PRO B 37 0 0.26 CISPEP 5 PRO B 223 PRO B 224 0 11.29 CISPEP 6 TRP B 249 PRO B 250 0 7.46 SITE 1 AC1 15 HIS A 31 HIS A 33 TYR A 49 ALA A 76 SITE 2 AC1 15 SER A 77 ARG A 124 ARG A 130 LEU A 131 SITE 3 AC1 15 TYR A 156 HIS A 180 ARG A 183 ARG A 217 SITE 4 AC1 15 ASN A 253 ACT A 402 0GY A 403 SITE 1 AC2 8 ARG A 130 ARG A 183 ARG A 217 ASN A 253 SITE 2 AC2 8 0GZ A 401 0GY A 403 HOH A 651 HOH A 705 SITE 1 AC3 16 HIS A 31 HIS A 33 TYR A 49 ALA A 76 SITE 2 AC3 16 SER A 77 ARG A 124 ARG A 130 LEU A 131 SITE 3 AC3 16 TYR A 156 HIS A 180 ARG A 183 ARG A 217 SITE 4 AC3 16 PRO A 252 ASN A 253 0GZ A 401 ACT A 402 SITE 1 AC4 16 HIS B 31 HIS B 33 TYR B 49 SER B 77 SITE 2 AC4 16 ARG B 124 ARG B 130 LEU B 131 TYR B 156 SITE 3 AC4 16 HIS B 180 ARG B 183 ARG B 217 PRO B 252 SITE 4 AC4 16 ASN B 253 ACT B 402 0GY B 405 HOH B 698 SITE 1 AC5 8 ARG B 130 ARG B 183 ARG B 217 ASN B 253 SITE 2 AC5 8 0GZ B 401 0GY B 405 HOH B 735 HOH B 826 SITE 1 AC6 6 HOH B 591 HOH B 688 HOH B 701 HOH B 741 SITE 2 AC6 6 HOH B 759 HOH B 783 SITE 1 AC7 5 HOH B 630 HOH B 674 HOH B 719 HOH B 737 SITE 2 AC7 5 HOH B 781 SITE 1 AC8 17 HIS B 31 HIS B 33 TYR B 49 ALA B 76 SITE 2 AC8 17 SER B 77 ARG B 124 ARG B 130 LEU B 131 SITE 3 AC8 17 TYR B 156 HIS B 180 ARG B 183 ARG B 217 SITE 4 AC8 17 PRO B 252 ASN B 253 0GZ B 401 ACT B 402 SITE 5 AC8 17 HOH B 698 CRYST1 74.348 52.131 76.539 90.00 93.73 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013450 0.000000 0.000877 0.00000 SCALE2 0.000000 0.019182 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013093 0.00000