HEADER DNA BINDING PROTEIN 12-JAN-12 4DA2 TITLE THE STRUCTURE OF PYROCOCCUS FURIOSUS SFSA IN COMPLEX WITH CA2+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUGAR FERMENTATION STIMULATION PROTEIN HOMOLOG; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 186497; SOURCE 4 STRAIN: ATCC 43587 / DSM 3638 / JCM 8422 / VC1; SOURCE 5 GENE: PF1198, SFSA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET24D KEYWDS OB FOLD, PD-(D/E)XK DOMAIN, NUCLEASE, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.J.BAKER,F.L.ALLEN REVDAT 2 06-NOV-24 4DA2 1 REMARK SEQADV LINK REVDAT 1 15-OCT-14 4DA2 0 JRNL AUTH F.L.ALLEN,J.AKERBOOM,S.J.BLISS,F.BLOMBACH,S.E.SEDELNIKOVA, JRNL AUTH 2 J.VAN DER OOST,P.J.BAKER JRNL TITL THE STRUCTURE OF SFSA AND ITS DNA COMPLEX; A DNA/RNA JRNL TITL 2 NUCLEASE WITH A NOVEL DOMAIN COMBINATION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 196.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 42741 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.138 REMARK 3 R VALUE (WORKING SET) : 0.136 REMARK 3 FREE R VALUE : 0.172 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2120 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3053 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.1810 REMARK 3 BIN FREE R VALUE SET COUNT : 135 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3676 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 164 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.84000 REMARK 3 B22 (A**2) : -0.84000 REMARK 3 B33 (A**2) : 1.68000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.021 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.020 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.046 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.422 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3736 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5004 ; 1.374 ; 2.010 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 460 ; 6.078 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 156 ;28.636 ;22.179 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 752 ;12.948 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;19.063 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 554 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2724 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2288 ; 8.610 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3686 ; 8.954 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1448 ;34.058 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1318 ;27.460 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.624 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : K, H, -L REMARK 3 TWIN FRACTION : 0.376 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 4DA2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000070071. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-08; 11-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : DIAMOND; ESRF REMARK 200 BEAMLINE : I03; ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.975564; 0.9793, 0.9795, 0.9755 REMARK 200 MONOCHROMATOR : DIAMOND BEAMLINE I03; LIQUID REMARK 200 NITROGEN COOLED CHANNEL-CUT REMARK 200 SILICON MONOCHROMATOR REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; PIXEL REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R; DECTRIS REMARK 200 PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42809 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 64.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.45000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% (W/V) PEG 3350, 0.2 M CALCIUM REMARK 280 ACETATE, 0.01 M SODIUM ACETATE AND 0.22 M POTASSIUM CHLORIDE PH REMARK 280 4.6, VAPOR DIFFUSION, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.85833 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 129.71667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 28 -124.93 58.85 REMARK 500 THR A 37 76.90 -114.97 REMARK 500 LYS A 74 -160.08 -117.51 REMARK 500 ALA A 176 44.11 -78.81 REMARK 500 LYS B 28 -120.08 52.09 REMARK 500 THR B 37 74.64 -116.25 REMARK 500 ASN B 38 119.33 -165.81 REMARK 500 ALA B 176 47.97 -84.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 108 OE2 REMARK 620 2 GLU A 108 OE1 49.6 REMARK 620 3 ASP A 117 OD1 80.4 121.5 REMARK 620 4 HOH A 402 O 145.7 154.0 84.4 REMARK 620 5 HOH A 404 O 73.5 94.1 98.9 78.8 REMARK 620 6 HOH A 405 O 122.1 74.0 152.6 83.1 102.4 REMARK 620 7 HOH A 406 O 118.5 96.0 81.6 89.1 167.8 74.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 117 OD2 REMARK 620 2 ASP A 117 OD1 48.8 REMARK 620 3 GLU A 130 OE2 83.5 84.9 REMARK 620 4 THR A 131 O 79.7 128.2 84.1 REMARK 620 5 HOH A 401 O 157.6 140.1 78.0 85.8 REMARK 620 6 HOH A 402 O 119.7 70.9 90.7 159.3 73.5 REMARK 620 7 HOH A 403 O 75.5 76.4 158.0 98.2 123.9 94.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 108 OE2 REMARK 620 2 GLU B 108 OE1 46.6 REMARK 620 3 ASP B 117 OD1 83.3 116.6 REMARK 620 4 HOH B 403 O 132.0 167.2 73.3 REMARK 620 5 HOH B 405 O 68.4 99.2 92.5 71.4 REMARK 620 6 HOH B 407 O 115.0 94.8 70.9 96.3 161.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 117 OD2 REMARK 620 2 ASP B 117 OD1 47.4 REMARK 620 3 GLU B 130 OE2 79.7 82.3 REMARK 620 4 THR B 131 O 77.8 124.7 80.8 REMARK 620 5 HOH B 402 O 155.4 134.2 76.7 91.7 REMARK 620 6 HOH B 403 O 114.0 68.1 107.1 166.5 79.9 REMARK 620 7 HOH B 404 O 74.6 78.1 154.1 96.7 129.2 81.0 REMARK 620 8 HOH B 469 O 129.0 143.8 133.8 73.4 66.6 93.5 68.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DAP RELATED DB: PDB REMARK 900 RELATED ID: 4DAV RELATED DB: PDB DBREF 4DA2 A 1 230 UNP Q8U1K8 SFSA_PYRFU 1 230 DBREF 4DA2 B 1 230 UNP Q8U1K8 SFSA_PYRFU 1 230 SEQADV 4DA2 ALA A 0 UNP Q8U1K8 EXPRESSION TAG SEQADV 4DA2 ILE A 120 UNP Q8U1K8 LEU 120 ENGINEERED MUTATION SEQADV 4DA2 ALA B 0 UNP Q8U1K8 EXPRESSION TAG SEQADV 4DA2 ILE B 120 UNP Q8U1K8 LEU 120 ENGINEERED MUTATION SEQRES 1 A 231 ALA MET LYS LEU MET GLU VAL SER PRO LEU PHE PRO CYS SEQRES 2 A 231 ILE PHE LEU ARG ARG VAL ASN ARG PHE VAL GLY LEU VAL SEQRES 3 A 231 ARG ILE LYS GLU ARG ILE GLU ARG ALA LEU ILE THR ASN SEQRES 4 A 231 THR GLY ARG LEU ASN GLU PHE MET ILE PRO GLY ARG ILE SEQRES 5 A 231 GLY TYR CYS THR PRO LYS ALA GLY GLY LYS THR ARG TYR SEQRES 6 A 231 ILE LEU LEU GLY PHE GLU ASP HIS GLY LYS ILE ALA ILE SEQRES 7 A 231 ILE ASP THR ARG LEU GLN GLY LYS ALA PHE GLU LYS ILE SEQRES 8 A 231 ILE GLU LYS GLU LEU LEU PRO GLU LEU GLU GLY CYS ARG SEQRES 9 A 231 ILE ILE LYS ARG GLU PRO ARG VAL GLY GLU SER ARG LEU SEQRES 10 A 231 ASP TYR LEU ILE GLU CYS SER LYS GLY GLU ILE PHE VAL SEQRES 11 A 231 GLU THR LYS SER ALA VAL LEU ARG GLU GLY GLU TYR ALA SEQRES 12 A 231 MET TYR PRO ASP CYS PRO SER VAL ARG GLY GLN ARG HIS SEQRES 13 A 231 ILE LYS GLU LEU ILE LYS LEU ALA ARG ASP GLY LYS ARG SEQRES 14 A 231 ALA MET ILE VAL PHE ILE GLY ALA LEU PRO ASN VAL SER SEQRES 15 A 231 LYS PHE LYS PRO TYR LYS LYS GLY ASP PRO LYS ILE ALA SEQRES 16 A 231 GLU LEU LEU LYS GLU ALA LEU GLU ALA GLY VAL GLU ILE SEQRES 17 A 231 ARG ALA LEU GLY LEU HIS MET GLU LEU SER GLY GLU ILE SEQRES 18 A 231 ILE TYR ARG GLY GLU LEU GLY VAL GLU ILE SEQRES 1 B 231 ALA MET LYS LEU MET GLU VAL SER PRO LEU PHE PRO CYS SEQRES 2 B 231 ILE PHE LEU ARG ARG VAL ASN ARG PHE VAL GLY LEU VAL SEQRES 3 B 231 ARG ILE LYS GLU ARG ILE GLU ARG ALA LEU ILE THR ASN SEQRES 4 B 231 THR GLY ARG LEU ASN GLU PHE MET ILE PRO GLY ARG ILE SEQRES 5 B 231 GLY TYR CYS THR PRO LYS ALA GLY GLY LYS THR ARG TYR SEQRES 6 B 231 ILE LEU LEU GLY PHE GLU ASP HIS GLY LYS ILE ALA ILE SEQRES 7 B 231 ILE ASP THR ARG LEU GLN GLY LYS ALA PHE GLU LYS ILE SEQRES 8 B 231 ILE GLU LYS GLU LEU LEU PRO GLU LEU GLU GLY CYS ARG SEQRES 9 B 231 ILE ILE LYS ARG GLU PRO ARG VAL GLY GLU SER ARG LEU SEQRES 10 B 231 ASP TYR LEU ILE GLU CYS SER LYS GLY GLU ILE PHE VAL SEQRES 11 B 231 GLU THR LYS SER ALA VAL LEU ARG GLU GLY GLU TYR ALA SEQRES 12 B 231 MET TYR PRO ASP CYS PRO SER VAL ARG GLY GLN ARG HIS SEQRES 13 B 231 ILE LYS GLU LEU ILE LYS LEU ALA ARG ASP GLY LYS ARG SEQRES 14 B 231 ALA MET ILE VAL PHE ILE GLY ALA LEU PRO ASN VAL SER SEQRES 15 B 231 LYS PHE LYS PRO TYR LYS LYS GLY ASP PRO LYS ILE ALA SEQRES 16 B 231 GLU LEU LEU LYS GLU ALA LEU GLU ALA GLY VAL GLU ILE SEQRES 17 B 231 ARG ALA LEU GLY LEU HIS MET GLU LEU SER GLY GLU ILE SEQRES 18 B 231 ILE TYR ARG GLY GLU LEU GLY VAL GLU ILE HET CA A 301 1 HET CA A 302 1 HET CA B 301 1 HET CA B 302 1 HETNAM CA CALCIUM ION FORMUL 3 CA 4(CA 2+) FORMUL 7 HOH *164(H2 O) HELIX 1 1 ASP A 79 LYS A 93 1 15 HELIX 2 2 LEU A 96 GLU A 100 5 5 HELIX 3 3 SER A 149 ASP A 165 1 17 HELIX 4 4 ASP A 190 GLY A 204 1 15 HELIX 5 5 ASP B 79 LYS B 93 1 15 HELIX 6 6 LEU B 96 GLU B 100 5 5 HELIX 7 7 SER B 149 ASP B 165 1 17 HELIX 8 8 ASP B 190 GLY B 204 1 15 SHEET 1 A 7 MET A 1 GLU A 5 0 SHEET 2 A 7 GLU A 219 GLU A 225 -1 O TYR A 222 N MET A 1 SHEET 3 A 7 GLU A 206 MET A 214 -1 N HIS A 213 O ILE A 221 SHEET 4 A 7 ARG A 168 GLY A 175 1 N ILE A 171 O GLU A 206 SHEET 5 A 7 GLU A 126 SER A 133 1 N LYS A 132 O ILE A 174 SHEET 6 A 7 TYR A 118 GLU A 121 -1 N ILE A 120 O ILE A 127 SHEET 7 A 7 ARG A 103 ARG A 107 -1 N ARG A 103 O GLU A 121 SHEET 1 B 7 LYS A 74 ILE A 77 0 SHEET 2 B 7 TYR A 64 ASP A 71 -1 N PHE A 69 O ALA A 76 SHEET 3 B 7 ILE A 51 PRO A 56 -1 N ILE A 51 O GLU A 70 SHEET 4 B 7 PHE A 10 ARG A 17 -1 N PHE A 10 O CYS A 54 SHEET 5 B 7 VAL A 22 ILE A 27 -1 O LEU A 24 N ARG A 16 SHEET 6 B 7 ARG A 30 LEU A 35 -1 O GLU A 32 N VAL A 25 SHEET 7 B 7 TYR A 64 ASP A 71 1 O TYR A 64 N LEU A 35 SHEET 1 C 2 ARG A 110 VAL A 111 0 SHEET 2 C 2 SER A 114 ARG A 115 -1 O SER A 114 N VAL A 111 SHEET 1 D 4 LEU A 136 GLU A 138 0 SHEET 2 D 4 TYR A 141 TYR A 144 -1 O TYR A 141 N GLU A 138 SHEET 3 D 4 LYS A 182 PRO A 185 1 O LYS A 182 N ALA A 142 SHEET 4 D 4 GLY A 227 VAL A 228 1 O GLY A 227 N PHE A 183 SHEET 1 E 7 MET B 1 GLU B 5 0 SHEET 2 E 7 GLU B 219 GLU B 225 -1 O TYR B 222 N MET B 1 SHEET 3 E 7 GLU B 206 MET B 214 -1 N GLY B 211 O GLY B 224 SHEET 4 E 7 ARG B 168 GLY B 175 1 N PHE B 173 O ARG B 208 SHEET 5 E 7 GLU B 126 SER B 133 1 N LYS B 132 O ILE B 174 SHEET 6 E 7 TYR B 118 GLU B 121 -1 N ILE B 120 O ILE B 127 SHEET 7 E 7 ARG B 103 ARG B 107 -1 N ARG B 103 O GLU B 121 SHEET 1 F 7 LYS B 74 ILE B 77 0 SHEET 2 F 7 TYR B 64 ASP B 71 -1 N PHE B 69 O ALA B 76 SHEET 3 F 7 ILE B 51 PRO B 56 -1 N THR B 55 O ILE B 65 SHEET 4 F 7 PHE B 10 ASN B 19 -1 N PHE B 10 O CYS B 54 SHEET 5 F 7 VAL B 22 ILE B 27 -1 O LEU B 24 N ARG B 16 SHEET 6 F 7 ARG B 30 LEU B 35 -1 O GLU B 32 N VAL B 25 SHEET 7 F 7 TYR B 64 ASP B 71 1 O TYR B 64 N LEU B 35 SHEET 1 G 2 ARG B 110 VAL B 111 0 SHEET 2 G 2 SER B 114 ARG B 115 -1 O SER B 114 N VAL B 111 SHEET 1 H 4 LEU B 136 GLU B 138 0 SHEET 2 H 4 TYR B 141 TYR B 144 -1 O TYR B 141 N GLU B 138 SHEET 3 H 4 LYS B 182 PRO B 185 1 O LYS B 182 N ALA B 142 SHEET 4 H 4 GLY B 227 VAL B 228 1 O GLY B 227 N PHE B 183 SSBOND 1 CYS A 102 CYS A 122 1555 1555 2.05 SSBOND 2 CYS B 102 CYS B 122 1555 1555 2.05 LINK OE2 GLU A 108 CA CA A 302 1555 1555 2.53 LINK OE1 GLU A 108 CA CA A 302 1555 1555 2.66 LINK OD2 ASP A 117 CA CA A 301 1555 1555 2.35 LINK OD1 ASP A 117 CA CA A 301 1555 1555 2.86 LINK OD1 ASP A 117 CA CA A 302 1555 1555 2.30 LINK OE2 GLU A 130 CA CA A 301 1555 1555 2.36 LINK O THR A 131 CA CA A 301 1555 1555 2.36 LINK CA CA A 301 O HOH A 401 1555 1555 2.42 LINK CA CA A 301 O HOH A 402 1555 1555 2.61 LINK CA CA A 301 O HOH A 403 1555 1555 2.46 LINK CA CA A 302 O HOH A 402 1555 1555 2.42 LINK CA CA A 302 O HOH A 404 1555 1555 2.05 LINK CA CA A 302 O HOH A 405 1555 1555 2.60 LINK CA CA A 302 O HOH A 406 1555 1555 2.49 LINK OE2 GLU B 108 CA CA B 302 1555 1555 2.51 LINK OE1 GLU B 108 CA CA B 302 1555 1555 2.94 LINK OD2 ASP B 117 CA CA B 301 1555 1555 2.40 LINK OD1 ASP B 117 CA CA B 301 1555 1555 2.94 LINK OD1 ASP B 117 CA CA B 302 1555 1555 2.43 LINK OE2 GLU B 130 CA CA B 301 1555 1555 2.46 LINK O THR B 131 CA CA B 301 1555 1555 2.36 LINK CA CA B 301 O HOH B 402 1555 1555 2.39 LINK CA CA B 301 O HOH B 403 1555 1555 2.28 LINK CA CA B 301 O HOH B 404 1555 1555 2.52 LINK CA CA B 301 O HOH B 469 1555 1555 2.78 LINK CA CA B 302 O HOH B 403 1555 1555 2.55 LINK CA CA B 302 O HOH B 405 1555 1555 1.96 LINK CA CA B 302 O HOH B 407 1555 1555 2.28 CISPEP 1 SER A 7 PRO A 8 0 -7.04 CISPEP 2 GLY A 59 GLY A 60 0 -0.89 CISPEP 3 TYR A 144 PRO A 145 0 -4.77 CISPEP 4 SER B 7 PRO B 8 0 -5.30 CISPEP 5 TYR B 144 PRO B 145 0 -7.62 SITE 1 AC1 6 ASP A 117 GLU A 130 THR A 131 HOH A 401 SITE 2 AC1 6 HOH A 402 HOH A 403 SITE 1 AC2 6 GLU A 108 ASP A 117 HOH A 402 HOH A 404 SITE 2 AC2 6 HOH A 405 HOH A 406 SITE 1 AC3 7 ASP B 117 GLU B 130 THR B 131 HOH B 402 SITE 2 AC3 7 HOH B 403 HOH B 404 HOH B 469 SITE 1 AC4 5 GLU B 108 ASP B 117 HOH B 403 HOH B 405 SITE 2 AC4 5 HOH B 407 CRYST1 46.017 46.017 194.575 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021731 0.012546 0.000000 0.00000 SCALE2 0.000000 0.025093 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005139 0.00000