data_4DA8 # _entry.id 4DA8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4DA8 pdb_00004da8 10.2210/pdb4da8/pdb RCSB RCSB070077 ? ? WWPDB D_1000070077 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-09-26 2 'Structure model' 1 1 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' struct_ref_seq_dif 5 2 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_struct_ref_seq_dif.details' 4 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 2 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 4DA8 _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-01-12 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4D8V . unspecified PDB 4D8X . unspecified PDB 4D8Y . unspecified PDB 4D98 . unspecified PDB 4D9H . unspecified PDB 4DA0 . unspecified PDB 4DA6 . unspecified PDB 4DA7 . unspecified PDB 4DAB . unspecified PDB 4DAE . unspecified PDB 4DAN . unspecified PDB 4DAO . unspecified PDB 4DAR . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Martins, N.H.' 1 'Giuseppe, P.O.' 2 'Meza, A.N.' 3 'Murakami, M.T.' 4 # _citation.id primary _citation.title ;Insights into phosphate cooperativity and influence of substrate modifications on binding and catalysis of hexameric purine nucleoside phosphorylases. ; _citation.journal_abbrev 'Plos One' _citation.journal_volume 7 _citation.page_first e44282 _citation.page_last e44282 _citation.year 2012 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1932-6203 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22957058 _citation.pdbx_database_id_DOI 10.1371/journal.pone.0044282 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'de Giuseppe, P.O.' 1 ? primary 'Martins, N.H.' 2 ? primary 'Meza, A.N.' 3 ? primary 'Dos Santos, C.R.' 4 ? primary 'Pereira, H.D.' 5 ? primary 'Murakami, M.T.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Purine nucleoside phosphorylase deoD-type' 27562.137 1 2.4.2.1 ? ? ? 2 non-polymer syn 8-bromoguanosine 362.137 1 ? ? ? ? 3 water nat water 18.015 39 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'PNP, Purine nucleoside phosphorylase II, PU-NPase II' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGSSHHHHHHSSGLVPRGSHMSVHIGAEKGQIADTVLLPGDPLRAKFIAETYLENVECYNEVRGMYGFTGTYKGKKISVQ GTGMGVPSISIYVNELIQSYDVQNLIRVGSCGAIRKDVKVRDVILAMTSSTDSQMNRVAFGSVDFAPCADFELLKNAYDA AKDKGVPVTVGSVFTADQFYNDDSQIEKLAKYGVLGVEMETTALYTLAAKHGRKALSILTVSDHVLTGEETTAEERQTTF HDMIDVALHSVSQ ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSSHHHHHHSSGLVPRGSHMSVHIGAEKGQIADTVLLPGDPLRAKFIAETYLENVECYNEVRGMYGFTGTYKGKKISVQ GTGMGVPSISIYVNELIQSYDVQNLIRVGSCGAIRKDVKVRDVILAMTSSTDSQMNRVAFGSVDFAPCADFELLKNAYDA AKDKGVPVTVGSVFTADQFYNDDSQIEKLAKYGVLGVEMETTALYTLAAKHGRKALSILTVSDHVLTGEETTAEERQTTF HDMIDVALHSVSQ ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 8-bromoguanosine BG2 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 SER n 1 13 GLY n 1 14 LEU n 1 15 VAL n 1 16 PRO n 1 17 ARG n 1 18 GLY n 1 19 SER n 1 20 HIS n 1 21 MET n 1 22 SER n 1 23 VAL n 1 24 HIS n 1 25 ILE n 1 26 GLY n 1 27 ALA n 1 28 GLU n 1 29 LYS n 1 30 GLY n 1 31 GLN n 1 32 ILE n 1 33 ALA n 1 34 ASP n 1 35 THR n 1 36 VAL n 1 37 LEU n 1 38 LEU n 1 39 PRO n 1 40 GLY n 1 41 ASP n 1 42 PRO n 1 43 LEU n 1 44 ARG n 1 45 ALA n 1 46 LYS n 1 47 PHE n 1 48 ILE n 1 49 ALA n 1 50 GLU n 1 51 THR n 1 52 TYR n 1 53 LEU n 1 54 GLU n 1 55 ASN n 1 56 VAL n 1 57 GLU n 1 58 CYS n 1 59 TYR n 1 60 ASN n 1 61 GLU n 1 62 VAL n 1 63 ARG n 1 64 GLY n 1 65 MET n 1 66 TYR n 1 67 GLY n 1 68 PHE n 1 69 THR n 1 70 GLY n 1 71 THR n 1 72 TYR n 1 73 LYS n 1 74 GLY n 1 75 LYS n 1 76 LYS n 1 77 ILE n 1 78 SER n 1 79 VAL n 1 80 GLN n 1 81 GLY n 1 82 THR n 1 83 GLY n 1 84 MET n 1 85 GLY n 1 86 VAL n 1 87 PRO n 1 88 SER n 1 89 ILE n 1 90 SER n 1 91 ILE n 1 92 TYR n 1 93 VAL n 1 94 ASN n 1 95 GLU n 1 96 LEU n 1 97 ILE n 1 98 GLN n 1 99 SER n 1 100 TYR n 1 101 ASP n 1 102 VAL n 1 103 GLN n 1 104 ASN n 1 105 LEU n 1 106 ILE n 1 107 ARG n 1 108 VAL n 1 109 GLY n 1 110 SER n 1 111 CYS n 1 112 GLY n 1 113 ALA n 1 114 ILE n 1 115 ARG n 1 116 LYS n 1 117 ASP n 1 118 VAL n 1 119 LYS n 1 120 VAL n 1 121 ARG n 1 122 ASP n 1 123 VAL n 1 124 ILE n 1 125 LEU n 1 126 ALA n 1 127 MET n 1 128 THR n 1 129 SER n 1 130 SER n 1 131 THR n 1 132 ASP n 1 133 SER n 1 134 GLN n 1 135 MET n 1 136 ASN n 1 137 ARG n 1 138 VAL n 1 139 ALA n 1 140 PHE n 1 141 GLY n 1 142 SER n 1 143 VAL n 1 144 ASP n 1 145 PHE n 1 146 ALA n 1 147 PRO n 1 148 CYS n 1 149 ALA n 1 150 ASP n 1 151 PHE n 1 152 GLU n 1 153 LEU n 1 154 LEU n 1 155 LYS n 1 156 ASN n 1 157 ALA n 1 158 TYR n 1 159 ASP n 1 160 ALA n 1 161 ALA n 1 162 LYS n 1 163 ASP n 1 164 LYS n 1 165 GLY n 1 166 VAL n 1 167 PRO n 1 168 VAL n 1 169 THR n 1 170 VAL n 1 171 GLY n 1 172 SER n 1 173 VAL n 1 174 PHE n 1 175 THR n 1 176 ALA n 1 177 ASP n 1 178 GLN n 1 179 PHE n 1 180 TYR n 1 181 ASN n 1 182 ASP n 1 183 ASP n 1 184 SER n 1 185 GLN n 1 186 ILE n 1 187 GLU n 1 188 LYS n 1 189 LEU n 1 190 ALA n 1 191 LYS n 1 192 TYR n 1 193 GLY n 1 194 VAL n 1 195 LEU n 1 196 GLY n 1 197 VAL n 1 198 GLU n 1 199 MET n 1 200 GLU n 1 201 THR n 1 202 THR n 1 203 ALA n 1 204 LEU n 1 205 TYR n 1 206 THR n 1 207 LEU n 1 208 ALA n 1 209 ALA n 1 210 LYS n 1 211 HIS n 1 212 GLY n 1 213 ARG n 1 214 LYS n 1 215 ALA n 1 216 LEU n 1 217 SER n 1 218 ILE n 1 219 LEU n 1 220 THR n 1 221 VAL n 1 222 SER n 1 223 ASP n 1 224 HIS n 1 225 VAL n 1 226 LEU n 1 227 THR n 1 228 GLY n 1 229 GLU n 1 230 GLU n 1 231 THR n 1 232 THR n 1 233 ALA n 1 234 GLU n 1 235 GLU n 1 236 ARG n 1 237 GLN n 1 238 THR n 1 239 THR n 1 240 PHE n 1 241 HIS n 1 242 ASP n 1 243 MET n 1 244 ILE n 1 245 ASP n 1 246 VAL n 1 247 ALA n 1 248 LEU n 1 249 HIS n 1 250 SER n 1 251 VAL n 1 252 SER n 1 253 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BSU19630, deoD, punB' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus subtilis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1423 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain Rosetta _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BG2 non-polymer . 8-bromoguanosine ? 'C10 H12 Br N5 O5' 362.137 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -19 ? ? ? A . n A 1 2 GLY 2 -18 ? ? ? A . n A 1 3 SER 3 -17 ? ? ? A . n A 1 4 SER 4 -16 ? ? ? A . n A 1 5 HIS 5 -15 ? ? ? A . n A 1 6 HIS 6 -14 ? ? ? A . n A 1 7 HIS 7 -13 ? ? ? A . n A 1 8 HIS 8 -12 ? ? ? A . n A 1 9 HIS 9 -11 ? ? ? A . n A 1 10 HIS 10 -10 ? ? ? A . n A 1 11 SER 11 -9 ? ? ? A . n A 1 12 SER 12 -8 ? ? ? A . n A 1 13 GLY 13 -7 ? ? ? A . n A 1 14 LEU 14 -6 ? ? ? A . n A 1 15 VAL 15 -5 ? ? ? A . n A 1 16 PRO 16 -4 ? ? ? A . n A 1 17 ARG 17 -3 ? ? ? A . n A 1 18 GLY 18 -2 ? ? ? A . n A 1 19 SER 19 -1 ? ? ? A . n A 1 20 HIS 20 0 ? ? ? A . n A 1 21 MET 21 1 ? ? ? A . n A 1 22 SER 22 2 2 SER SER A . n A 1 23 VAL 23 3 3 VAL VAL A . n A 1 24 HIS 24 4 4 HIS HIS A . n A 1 25 ILE 25 5 5 ILE ILE A . n A 1 26 GLY 26 6 6 GLY GLY A . n A 1 27 ALA 27 7 7 ALA ALA A . n A 1 28 GLU 28 8 8 GLU GLU A . n A 1 29 LYS 29 9 9 LYS LYS A . n A 1 30 GLY 30 10 10 GLY GLY A . n A 1 31 GLN 31 11 11 GLN GLN A . n A 1 32 ILE 32 12 12 ILE ILE A . n A 1 33 ALA 33 13 13 ALA ALA A . n A 1 34 ASP 34 14 14 ASP ASP A . n A 1 35 THR 35 15 15 THR THR A . n A 1 36 VAL 36 16 16 VAL VAL A . n A 1 37 LEU 37 17 17 LEU LEU A . n A 1 38 LEU 38 18 18 LEU LEU A . n A 1 39 PRO 39 19 19 PRO PRO A . n A 1 40 GLY 40 20 20 GLY GLY A . n A 1 41 ASP 41 21 21 ASP ASP A . n A 1 42 PRO 42 22 22 PRO PRO A . n A 1 43 LEU 43 23 23 LEU LEU A . n A 1 44 ARG 44 24 24 ARG ARG A . n A 1 45 ALA 45 25 25 ALA ALA A . n A 1 46 LYS 46 26 26 LYS LYS A . n A 1 47 PHE 47 27 27 PHE PHE A . n A 1 48 ILE 48 28 28 ILE ILE A . n A 1 49 ALA 49 29 29 ALA ALA A . n A 1 50 GLU 50 30 30 GLU GLU A . n A 1 51 THR 51 31 31 THR THR A . n A 1 52 TYR 52 32 32 TYR TYR A . n A 1 53 LEU 53 33 33 LEU LEU A . n A 1 54 GLU 54 34 34 GLU GLU A . n A 1 55 ASN 55 35 35 ASN ASN A . n A 1 56 VAL 56 36 36 VAL VAL A . n A 1 57 GLU 57 37 37 GLU GLU A . n A 1 58 CYS 58 38 38 CYS CYS A . n A 1 59 TYR 59 39 39 TYR TYR A . n A 1 60 ASN 60 40 40 ASN ASN A . n A 1 61 GLU 61 41 41 GLU GLU A . n A 1 62 VAL 62 42 42 VAL VAL A . n A 1 63 ARG 63 43 43 ARG ARG A . n A 1 64 GLY 64 44 44 GLY GLY A . n A 1 65 MET 65 45 45 MET MET A . n A 1 66 TYR 66 46 46 TYR TYR A . n A 1 67 GLY 67 47 47 GLY GLY A . n A 1 68 PHE 68 48 48 PHE PHE A . n A 1 69 THR 69 49 49 THR THR A . n A 1 70 GLY 70 50 50 GLY GLY A . n A 1 71 THR 71 51 51 THR THR A . n A 1 72 TYR 72 52 52 TYR TYR A . n A 1 73 LYS 73 53 53 LYS LYS A . n A 1 74 GLY 74 54 54 GLY GLY A . n A 1 75 LYS 75 55 55 LYS LYS A . n A 1 76 LYS 76 56 56 LYS LYS A . n A 1 77 ILE 77 57 57 ILE ILE A . n A 1 78 SER 78 58 58 SER SER A . n A 1 79 VAL 79 59 59 VAL VAL A . n A 1 80 GLN 80 60 60 GLN GLN A . n A 1 81 GLY 81 61 61 GLY GLY A . n A 1 82 THR 82 62 62 THR THR A . n A 1 83 GLY 83 63 63 GLY GLY A . n A 1 84 MET 84 64 64 MET MET A . n A 1 85 GLY 85 65 65 GLY GLY A . n A 1 86 VAL 86 66 66 VAL VAL A . n A 1 87 PRO 87 67 67 PRO PRO A . n A 1 88 SER 88 68 68 SER SER A . n A 1 89 ILE 89 69 69 ILE ILE A . n A 1 90 SER 90 70 70 SER SER A . n A 1 91 ILE 91 71 71 ILE ILE A . n A 1 92 TYR 92 72 72 TYR TYR A . n A 1 93 VAL 93 73 73 VAL VAL A . n A 1 94 ASN 94 74 74 ASN ASN A . n A 1 95 GLU 95 75 75 GLU GLU A . n A 1 96 LEU 96 76 76 LEU LEU A . n A 1 97 ILE 97 77 77 ILE ILE A . n A 1 98 GLN 98 78 78 GLN GLN A . n A 1 99 SER 99 79 79 SER SER A . n A 1 100 TYR 100 80 80 TYR TYR A . n A 1 101 ASP 101 81 81 ASP ASP A . n A 1 102 VAL 102 82 82 VAL VAL A . n A 1 103 GLN 103 83 83 GLN GLN A . n A 1 104 ASN 104 84 84 ASN ASN A . n A 1 105 LEU 105 85 85 LEU LEU A . n A 1 106 ILE 106 86 86 ILE ILE A . n A 1 107 ARG 107 87 87 ARG ARG A . n A 1 108 VAL 108 88 88 VAL VAL A . n A 1 109 GLY 109 89 89 GLY GLY A . n A 1 110 SER 110 90 90 SER SER A . n A 1 111 CYS 111 91 91 CYS CYS A . n A 1 112 GLY 112 92 92 GLY GLY A . n A 1 113 ALA 113 93 93 ALA ALA A . n A 1 114 ILE 114 94 94 ILE ILE A . n A 1 115 ARG 115 95 95 ARG ARG A . n A 1 116 LYS 116 96 96 LYS LYS A . n A 1 117 ASP 117 97 97 ASP ASP A . n A 1 118 VAL 118 98 98 VAL VAL A . n A 1 119 LYS 119 99 99 LYS LYS A . n A 1 120 VAL 120 100 100 VAL VAL A . n A 1 121 ARG 121 101 101 ARG ARG A . n A 1 122 ASP 122 102 102 ASP ASP A . n A 1 123 VAL 123 103 103 VAL VAL A . n A 1 124 ILE 124 104 104 ILE ILE A . n A 1 125 LEU 125 105 105 LEU LEU A . n A 1 126 ALA 126 106 106 ALA ALA A . n A 1 127 MET 127 107 107 MET MET A . n A 1 128 THR 128 108 108 THR THR A . n A 1 129 SER 129 109 109 SER SER A . n A 1 130 SER 130 110 110 SER SER A . n A 1 131 THR 131 111 111 THR THR A . n A 1 132 ASP 132 112 112 ASP ASP A . n A 1 133 SER 133 113 113 SER SER A . n A 1 134 GLN 134 114 114 GLN GLN A . n A 1 135 MET 135 115 115 MET MET A . n A 1 136 ASN 136 116 116 ASN ASN A . n A 1 137 ARG 137 117 117 ARG ARG A . n A 1 138 VAL 138 118 118 VAL VAL A . n A 1 139 ALA 139 119 119 ALA ALA A . n A 1 140 PHE 140 120 120 PHE PHE A . n A 1 141 GLY 141 121 121 GLY GLY A . n A 1 142 SER 142 122 122 SER SER A . n A 1 143 VAL 143 123 123 VAL VAL A . n A 1 144 ASP 144 124 124 ASP ASP A . n A 1 145 PHE 145 125 125 PHE PHE A . n A 1 146 ALA 146 126 126 ALA ALA A . n A 1 147 PRO 147 127 127 PRO PRO A . n A 1 148 CYS 148 128 128 CYS CYS A . n A 1 149 ALA 149 129 129 ALA ALA A . n A 1 150 ASP 150 130 130 ASP ASP A . n A 1 151 PHE 151 131 131 PHE PHE A . n A 1 152 GLU 152 132 132 GLU GLU A . n A 1 153 LEU 153 133 133 LEU LEU A . n A 1 154 LEU 154 134 134 LEU LEU A . n A 1 155 LYS 155 135 135 LYS LYS A . n A 1 156 ASN 156 136 136 ASN ASN A . n A 1 157 ALA 157 137 137 ALA ALA A . n A 1 158 TYR 158 138 138 TYR TYR A . n A 1 159 ASP 159 139 139 ASP ASP A . n A 1 160 ALA 160 140 140 ALA ALA A . n A 1 161 ALA 161 141 141 ALA ALA A . n A 1 162 LYS 162 142 142 LYS LYS A . n A 1 163 ASP 163 143 143 ASP ASP A . n A 1 164 LYS 164 144 144 LYS LYS A . n A 1 165 GLY 165 145 145 GLY GLY A . n A 1 166 VAL 166 146 146 VAL VAL A . n A 1 167 PRO 167 147 147 PRO PRO A . n A 1 168 VAL 168 148 148 VAL VAL A . n A 1 169 THR 169 149 149 THR THR A . n A 1 170 VAL 170 150 150 VAL VAL A . n A 1 171 GLY 171 151 151 GLY GLY A . n A 1 172 SER 172 152 152 SER SER A . n A 1 173 VAL 173 153 153 VAL VAL A . n A 1 174 PHE 174 154 154 PHE PHE A . n A 1 175 THR 175 155 155 THR THR A . n A 1 176 ALA 176 156 156 ALA ALA A . n A 1 177 ASP 177 157 157 ASP ASP A . n A 1 178 GLN 178 158 158 GLN GLN A . n A 1 179 PHE 179 159 159 PHE PHE A . n A 1 180 TYR 180 160 160 TYR TYR A . n A 1 181 ASN 181 161 161 ASN ASN A . n A 1 182 ASP 182 162 162 ASP ASP A . n A 1 183 ASP 183 163 163 ASP ASP A . n A 1 184 SER 184 164 164 SER SER A . n A 1 185 GLN 185 165 165 GLN GLN A . n A 1 186 ILE 186 166 166 ILE ILE A . n A 1 187 GLU 187 167 167 GLU GLU A . n A 1 188 LYS 188 168 168 LYS LYS A . n A 1 189 LEU 189 169 169 LEU LEU A . n A 1 190 ALA 190 170 170 ALA ALA A . n A 1 191 LYS 191 171 171 LYS LYS A . n A 1 192 TYR 192 172 172 TYR TYR A . n A 1 193 GLY 193 173 173 GLY GLY A . n A 1 194 VAL 194 174 174 VAL VAL A . n A 1 195 LEU 195 175 175 LEU LEU A . n A 1 196 GLY 196 176 176 GLY GLY A . n A 1 197 VAL 197 177 177 VAL VAL A . n A 1 198 GLU 198 178 178 GLU GLU A . n A 1 199 MET 199 179 179 MET MET A . n A 1 200 GLU 200 180 180 GLU GLU A . n A 1 201 THR 201 181 181 THR THR A . n A 1 202 THR 202 182 182 THR THR A . n A 1 203 ALA 203 183 183 ALA ALA A . n A 1 204 LEU 204 184 184 LEU LEU A . n A 1 205 TYR 205 185 185 TYR TYR A . n A 1 206 THR 206 186 186 THR THR A . n A 1 207 LEU 207 187 187 LEU LEU A . n A 1 208 ALA 208 188 188 ALA ALA A . n A 1 209 ALA 209 189 189 ALA ALA A . n A 1 210 LYS 210 190 190 LYS LYS A . n A 1 211 HIS 211 191 191 HIS HIS A . n A 1 212 GLY 212 192 192 GLY GLY A . n A 1 213 ARG 213 193 193 ARG ARG A . n A 1 214 LYS 214 194 194 LYS LYS A . n A 1 215 ALA 215 195 195 ALA ALA A . n A 1 216 LEU 216 196 196 LEU LEU A . n A 1 217 SER 217 197 197 SER SER A . n A 1 218 ILE 218 198 198 ILE ILE A . n A 1 219 LEU 219 199 199 LEU LEU A . n A 1 220 THR 220 200 200 THR THR A . n A 1 221 VAL 221 201 201 VAL VAL A . n A 1 222 SER 222 202 202 SER SER A . n A 1 223 ASP 223 203 203 ASP ASP A . n A 1 224 HIS 224 204 204 HIS HIS A . n A 1 225 VAL 225 205 205 VAL VAL A . n A 1 226 LEU 226 206 206 LEU LEU A . n A 1 227 THR 227 207 207 THR THR A . n A 1 228 GLY 228 208 208 GLY GLY A . n A 1 229 GLU 229 209 209 GLU GLU A . n A 1 230 GLU 230 210 210 GLU GLU A . n A 1 231 THR 231 211 211 THR THR A . n A 1 232 THR 232 212 212 THR THR A . n A 1 233 ALA 233 213 213 ALA ALA A . n A 1 234 GLU 234 214 214 GLU GLU A . n A 1 235 GLU 235 215 215 GLU GLU A . n A 1 236 ARG 236 216 216 ARG ARG A . n A 1 237 GLN 237 217 217 GLN GLN A . n A 1 238 THR 238 218 218 THR THR A . n A 1 239 THR 239 219 219 THR THR A . n A 1 240 PHE 240 220 220 PHE PHE A . n A 1 241 HIS 241 221 221 HIS HIS A . n A 1 242 ASP 242 222 222 ASP ASP A . n A 1 243 MET 243 223 223 MET MET A . n A 1 244 ILE 244 224 224 ILE ILE A . n A 1 245 ASP 245 225 225 ASP ASP A . n A 1 246 VAL 246 226 226 VAL VAL A . n A 1 247 ALA 247 227 227 ALA ALA A . n A 1 248 LEU 248 228 228 LEU LEU A . n A 1 249 HIS 249 229 229 HIS HIS A . n A 1 250 SER 250 230 230 SER SER A . n A 1 251 VAL 251 231 231 VAL VAL A . n A 1 252 SER 252 232 232 SER SER A . n A 1 253 GLN 253 233 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BG2 1 301 1 BG2 BG2 A . C 3 HOH 1 401 2 HOH HOH A . C 3 HOH 2 402 3 HOH HOH A . C 3 HOH 3 403 4 HOH HOH A . C 3 HOH 4 404 5 HOH HOH A . C 3 HOH 5 405 6 HOH HOH A . C 3 HOH 6 406 7 HOH HOH A . C 3 HOH 7 407 8 HOH HOH A . C 3 HOH 8 408 9 HOH HOH A . C 3 HOH 9 409 10 HOH HOH A . C 3 HOH 10 410 11 HOH HOH A . C 3 HOH 11 411 12 HOH HOH A . C 3 HOH 12 412 13 HOH HOH A . C 3 HOH 13 413 14 HOH HOH A . C 3 HOH 14 414 15 HOH HOH A . C 3 HOH 15 415 16 HOH HOH A . C 3 HOH 16 416 17 HOH HOH A . C 3 HOH 17 417 18 HOH HOH A . C 3 HOH 18 418 19 HOH HOH A . C 3 HOH 19 419 20 HOH HOH A . C 3 HOH 20 420 21 HOH HOH A . C 3 HOH 21 421 22 HOH HOH A . C 3 HOH 22 422 23 HOH HOH A . C 3 HOH 23 423 24 HOH HOH A . C 3 HOH 24 424 25 HOH HOH A . C 3 HOH 25 425 26 HOH HOH A . C 3 HOH 26 426 27 HOH HOH A . C 3 HOH 27 427 28 HOH HOH A . C 3 HOH 28 428 29 HOH HOH A . C 3 HOH 29 429 30 HOH HOH A . C 3 HOH 30 430 31 HOH HOH A . C 3 HOH 31 431 32 HOH HOH A . C 3 HOH 32 432 33 HOH HOH A . C 3 HOH 33 433 34 HOH HOH A . C 3 HOH 34 434 35 HOH HOH A . C 3 HOH 35 435 36 HOH HOH A . C 3 HOH 36 436 37 HOH HOH A . C 3 HOH 37 437 38 HOH HOH A . C 3 HOH 38 438 39 HOH HOH A . C 3 HOH 39 439 40 HOH HOH A . # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 MOLREP . ? program 'Alexei Vaguine' alexei@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/molrep.html Fortran_77 ? 3 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 6 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? # _cell.entry_id 4DA8 _cell.length_a 135.752 _cell.length_b 135.752 _cell.length_c 57.384 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4DA8 _symmetry.space_group_name_H-M 'P 63 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? # _exptl.entry_id 4DA8 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.77 _exptl_crystal.density_percent_sol 55.58 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.1 M sodium acetate, 3.2 M sodium chloride, 5%(v/v) glycerol, pH 4.6, vapor diffusion, temperature 291K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'LNLS BEAMLINE W01B-MX2' _diffrn_source.pdbx_synchrotron_site LNLS _diffrn_source.pdbx_synchrotron_beamline W01B-MX2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4DA8 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.000 _reflns.d_resolution_high 2.600 _reflns.number_obs 9985 _reflns.number_all ? _reflns.percent_possible_obs 99.500 _reflns.pdbx_Rmerge_I_obs 0.094 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 10.000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.800 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared 1 1 2.600 2.690 96.100 0.537 ? ? 4.900 ? ? ? ? ? ? 1 2 2.690 2.800 99.700 0.415 ? ? 7.000 ? ? ? ? ? ? 1 3 2.800 2.930 99.900 0.335 ? ? 8.300 ? ? ? ? ? ? 1 4 2.930 3.080 100.000 0.223 ? ? 8.500 ? ? ? ? ? ? 1 5 3.080 3.280 100.000 0.164 ? ? 8.500 ? ? ? ? ? ? 1 6 3.280 3.530 100.000 0.114 ? ? 8.500 ? ? ? ? ? ? 1 7 3.530 3.880 100.000 0.087 ? ? 8.400 ? ? ? ? ? ? 1 8 3.880 4.450 100.000 0.077 ? ? 8.400 ? ? ? ? ? ? 1 9 4.450 5.600 99.800 0.075 ? ? 8.100 ? ? ? ? ? ? 1 10 5.600 50.000 99.600 0.058 ? ? 7.600 ? ? ? ? ? ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4DA8 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 9436 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 44.44 _refine.ls_d_res_high 2.60 _refine.ls_percent_reflns_obs 98.91 _refine.ls_R_factor_obs 0.20510 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.20255 _refine.ls_R_factor_R_free 0.26046 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 474 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 0.500 _refine.occupancy_max 1.000 _refine.correlation_coeff_Fo_to_Fc 0.944 _refine.correlation_coeff_Fo_to_Fc_free 0.917 _refine.B_iso_mean 49.106 _refine.aniso_B[1][1] 0.12 _refine.aniso_B[2][2] 0.12 _refine.aniso_B[3][3] -0.17 _refine.aniso_B[1][2] 0.06 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.498 _refine.pdbx_overall_ESU_R_Free 0.304 _refine.overall_SU_ML 0.211 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 10.168 _refine.overall_SU_R_Cruickshank_DPI 0.5021 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1761 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 21 _refine_hist.number_atoms_solvent 39 _refine_hist.number_atoms_total 1821 _refine_hist.d_res_high 2.60 _refine_hist.d_res_low 44.44 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.015 0.022 ? 1818 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.579 1.975 ? 2466 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.435 5.000 ? 232 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 38.944 24.935 ? 77 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 17.172 15.000 ? 311 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 11.702 15.000 ? 8 'X-RAY DIFFRACTION' ? r_chiral_restr 0.094 0.200 ? 289 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 1347 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.742 1.500 ? 1143 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.431 2.000 ? 1844 'X-RAY DIFFRACTION' ? r_scbond_it 1.999 3.000 ? 675 'X-RAY DIFFRACTION' ? r_scangle_it 3.499 4.500 ? 621 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.60 _refine_ls_shell.d_res_low 2.668 _refine_ls_shell.number_reflns_R_work 646 _refine_ls_shell.R_factor_R_work 0.333 _refine_ls_shell.percent_reflns_obs 95.23 _refine_ls_shell.R_factor_R_free 0.400 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 33 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 4DA8 _struct.title 'Crystal structure of the hexameric purine nucleoside phosphorylase from Bacillus subtilis in complex with 8-bromoguanosine' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4DA8 _struct_keywords.text 'Phosphorylase/hydrolase-like, TRANSFERASE' _struct_keywords.pdbx_keywords TRANSFERASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DEOD_BACSU _struct_ref.pdbx_db_accession O34925 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSVHIGAEKGQIADTVLLPGDPLRAKFIAETYLENVECYNEVRGMYGFTGTYKGKKISVQGTGMGVPSISIYVNELIQSY DVQNLIRVGSCGAIRKDVKVRDVILAMTSSTDSQMNRVAFGSVDFAPCADFELLKNAYDAAKDKGVPVTVGSVFTADQFY NDDSQIEKLAKYGVLGVEMETTALYTLAAKHGRKALSILTVSDHVLTGEETTAEERQTTFHDMIEVALHSVSQ ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4DA8 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 21 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 253 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O34925 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 233 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 233 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4DA8 MET A 1 ? UNP O34925 ? ? 'expression tag' -19 1 1 4DA8 GLY A 2 ? UNP O34925 ? ? 'expression tag' -18 2 1 4DA8 SER A 3 ? UNP O34925 ? ? 'expression tag' -17 3 1 4DA8 SER A 4 ? UNP O34925 ? ? 'expression tag' -16 4 1 4DA8 HIS A 5 ? UNP O34925 ? ? 'expression tag' -15 5 1 4DA8 HIS A 6 ? UNP O34925 ? ? 'expression tag' -14 6 1 4DA8 HIS A 7 ? UNP O34925 ? ? 'expression tag' -13 7 1 4DA8 HIS A 8 ? UNP O34925 ? ? 'expression tag' -12 8 1 4DA8 HIS A 9 ? UNP O34925 ? ? 'expression tag' -11 9 1 4DA8 HIS A 10 ? UNP O34925 ? ? 'expression tag' -10 10 1 4DA8 SER A 11 ? UNP O34925 ? ? 'expression tag' -9 11 1 4DA8 SER A 12 ? UNP O34925 ? ? 'expression tag' -8 12 1 4DA8 GLY A 13 ? UNP O34925 ? ? 'expression tag' -7 13 1 4DA8 LEU A 14 ? UNP O34925 ? ? 'expression tag' -6 14 1 4DA8 VAL A 15 ? UNP O34925 ? ? 'expression tag' -5 15 1 4DA8 PRO A 16 ? UNP O34925 ? ? 'expression tag' -4 16 1 4DA8 ARG A 17 ? UNP O34925 ? ? 'expression tag' -3 17 1 4DA8 GLY A 18 ? UNP O34925 ? ? 'expression tag' -2 18 1 4DA8 SER A 19 ? UNP O34925 ? ? 'expression tag' -1 19 1 4DA8 HIS A 20 ? UNP O34925 ? ? 'expression tag' 0 20 1 4DA8 ASP A 245 ? UNP O34925 GLU 225 'SEE REMARK 999' 225 21 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 21040 ? 1 MORE -108 ? 1 'SSA (A^2)' 45410 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5000000000 -0.8660254038 0.0000000000 -67.8760000000 0.8660254038 -0.5000000000 0.0000000000 117.5646806145 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5000000000 0.8660254038 0.0000000000 -135.7520000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 10_555 -y,-x,-z+1/2 0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 28.6920000000 5 'crystal symmetry operation' 11_455 -x+y-1,y,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 -135.7520000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 28.6920000000 6 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/2 0.5000000000 0.8660254038 0.0000000000 -67.8760000000 0.8660254038 -0.5000000000 0.0000000000 117.5646806145 0.0000000000 0.0000000000 -1.0000000000 28.6920000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 41 ? LEU A 53 ? ASP A 21 LEU A 33 1 ? 13 HELX_P HELX_P2 2 GLU A 61 ? MET A 65 ? GLU A 41 MET A 45 5 ? 5 HELX_P HELX_P3 3 GLY A 85 ? ASP A 101 ? GLY A 65 ASP A 81 1 ? 17 HELX_P HELX_P4 4 GLN A 134 ? GLY A 141 ? GLN A 114 GLY A 121 1 ? 8 HELX_P HELX_P5 5 ASP A 150 ? ASP A 163 ? ASP A 130 ASP A 143 1 ? 14 HELX_P HELX_P6 6 GLN A 185 ? TYR A 192 ? GLN A 165 TYR A 172 1 ? 8 HELX_P HELX_P7 7 GLU A 200 ? HIS A 211 ? GLU A 180 HIS A 191 1 ? 12 HELX_P HELX_P8 8 THR A 232 ? SER A 250 ? THR A 212 SER A 230 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 10 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? anti-parallel A 7 8 ? parallel A 8 9 ? parallel A 9 10 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 54 ? ASN A 60 ? GLU A 34 ASN A 40 A 2 GLY A 67 ? TYR A 72 ? GLY A 47 TYR A 52 A 3 LYS A 75 ? GLN A 80 ? LYS A 55 GLN A 60 A 4 THR A 35 ? LEU A 38 ? THR A 15 LEU A 18 A 5 ASN A 104 ? ALA A 113 ? ASN A 84 ALA A 93 A 6 LYS A 214 ? HIS A 224 ? LYS A 194 HIS A 204 A 7 VAL A 123 ? THR A 131 ? VAL A 103 THR A 111 A 8 VAL A 168 ? THR A 175 ? VAL A 148 THR A 155 A 9 GLY A 196 ? GLU A 198 ? GLY A 176 GLU A 178 A 10 ASN A 104 ? ALA A 113 ? ASN A 84 ALA A 93 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 57 ? N GLU A 37 O THR A 69 ? O THR A 49 A 2 3 N TYR A 72 ? N TYR A 52 O LYS A 75 ? O LYS A 55 A 3 4 O SER A 78 ? O SER A 58 N THR A 35 ? N THR A 15 A 4 5 N LEU A 38 ? N LEU A 18 O ILE A 106 ? O ILE A 86 A 5 6 N ARG A 107 ? N ARG A 87 O ILE A 218 ? O ILE A 198 A 6 7 O LEU A 219 ? O LEU A 199 N ILE A 124 ? N ILE A 104 A 7 8 N VAL A 123 ? N VAL A 103 O THR A 169 ? O THR A 149 A 8 9 N PHE A 174 ? N PHE A 154 O GLY A 196 ? O GLY A 176 A 9 10 O VAL A 197 ? O VAL A 177 N GLY A 112 ? N GLY A 92 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id BG2 _struct_site.pdbx_auth_seq_id 301 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 12 _struct_site.details 'BINDING SITE FOR RESIDUE BG2 A 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 12 HIS A 24 ? HIS A 4 . ? 10_555 ? 2 AC1 12 ARG A 107 ? ARG A 87 . ? 1_555 ? 3 AC1 12 SER A 110 ? SER A 90 . ? 1_555 ? 4 AC1 12 GLY A 112 ? GLY A 92 . ? 1_555 ? 5 AC1 12 PHE A 179 ? PHE A 159 . ? 1_555 ? 6 AC1 12 VAL A 197 ? VAL A 177 . ? 1_555 ? 7 AC1 12 GLU A 198 ? GLU A 178 . ? 1_555 ? 8 AC1 12 MET A 199 ? MET A 179 . ? 1_555 ? 9 AC1 12 GLU A 200 ? GLU A 180 . ? 1_555 ? 10 AC1 12 SER A 222 ? SER A 202 . ? 1_555 ? 11 AC1 12 ASP A 223 ? ASP A 203 . ? 1_555 ? 12 AC1 12 VAL A 225 ? VAL A 205 . ? 1_555 ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 9 ? ? -39.97 125.35 2 1 ASP A 163 ? ? -104.08 40.22 3 1 GLU A 178 ? ? -128.52 -156.93 4 1 MET A 179 ? ? -143.91 18.55 5 1 VAL A 231 ? ? -150.11 -34.41 # _phasing.method MR # _pdbx_entry_details.entry_id 4DA8 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'AUTHORS STATE THAT THIS IS A CLONING ARTIFACT' _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -19 ? A MET 1 2 1 Y 1 A GLY -18 ? A GLY 2 3 1 Y 1 A SER -17 ? A SER 3 4 1 Y 1 A SER -16 ? A SER 4 5 1 Y 1 A HIS -15 ? A HIS 5 6 1 Y 1 A HIS -14 ? A HIS 6 7 1 Y 1 A HIS -13 ? A HIS 7 8 1 Y 1 A HIS -12 ? A HIS 8 9 1 Y 1 A HIS -11 ? A HIS 9 10 1 Y 1 A HIS -10 ? A HIS 10 11 1 Y 1 A SER -9 ? A SER 11 12 1 Y 1 A SER -8 ? A SER 12 13 1 Y 1 A GLY -7 ? A GLY 13 14 1 Y 1 A LEU -6 ? A LEU 14 15 1 Y 1 A VAL -5 ? A VAL 15 16 1 Y 1 A PRO -4 ? A PRO 16 17 1 Y 1 A ARG -3 ? A ARG 17 18 1 Y 1 A GLY -2 ? A GLY 18 19 1 Y 1 A SER -1 ? A SER 19 20 1 Y 1 A HIS 0 ? A HIS 20 21 1 Y 1 A MET 1 ? A MET 21 22 1 Y 1 A GLN 233 ? A GLN 253 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BG2 BR BR N N 74 BG2 N1 N N N 75 BG2 C2 C N N 76 BG2 N2 N N N 77 BG2 N3 N N N 78 BG2 C4 C Y N 79 BG2 C5 C Y N 80 BG2 C6 C N N 81 BG2 O6 O N N 82 BG2 N7 N Y N 83 BG2 C8 C Y N 84 BG2 N9 N Y N 85 BG2 "C1'" C N R 86 BG2 "C2'" C N R 87 BG2 "O2'" O N N 88 BG2 "C3'" C N S 89 BG2 "O3'" O N N 90 BG2 "C4'" C N R 91 BG2 "O4'" O N N 92 BG2 "C5'" C N N 93 BG2 "O5'" O N N 94 BG2 HN1 H N N 95 BG2 HN2 H N N 96 BG2 HN2A H N N 97 BG2 "H1'" H N N 98 BG2 "H2'" H N N 99 BG2 "HO2'" H N N 100 BG2 "H3'" H N N 101 BG2 "HO3'" H N N 102 BG2 "H4'" H N N 103 BG2 "H5'" H N N 104 BG2 "H5'A" H N N 105 BG2 "HO5'" H N N 106 CYS N N N N 107 CYS CA C N R 108 CYS C C N N 109 CYS O O N N 110 CYS CB C N N 111 CYS SG S N N 112 CYS OXT O N N 113 CYS H H N N 114 CYS H2 H N N 115 CYS HA H N N 116 CYS HB2 H N N 117 CYS HB3 H N N 118 CYS HG H N N 119 CYS HXT H N N 120 GLN N N N N 121 GLN CA C N S 122 GLN C C N N 123 GLN O O N N 124 GLN CB C N N 125 GLN CG C N N 126 GLN CD C N N 127 GLN OE1 O N N 128 GLN NE2 N N N 129 GLN OXT O N N 130 GLN H H N N 131 GLN H2 H N N 132 GLN HA H N N 133 GLN HB2 H N N 134 GLN HB3 H N N 135 GLN HG2 H N N 136 GLN HG3 H N N 137 GLN HE21 H N N 138 GLN HE22 H N N 139 GLN HXT H N N 140 GLU N N N N 141 GLU CA C N S 142 GLU C C N N 143 GLU O O N N 144 GLU CB C N N 145 GLU CG C N N 146 GLU CD C N N 147 GLU OE1 O N N 148 GLU OE2 O N N 149 GLU OXT O N N 150 GLU H H N N 151 GLU H2 H N N 152 GLU HA H N N 153 GLU HB2 H N N 154 GLU HB3 H N N 155 GLU HG2 H N N 156 GLU HG3 H N N 157 GLU HE2 H N N 158 GLU HXT H N N 159 GLY N N N N 160 GLY CA C N N 161 GLY C C N N 162 GLY O O N N 163 GLY OXT O N N 164 GLY H H N N 165 GLY H2 H N N 166 GLY HA2 H N N 167 GLY HA3 H N N 168 GLY HXT H N N 169 HIS N N N N 170 HIS CA C N S 171 HIS C C N N 172 HIS O O N N 173 HIS CB C N N 174 HIS CG C Y N 175 HIS ND1 N Y N 176 HIS CD2 C Y N 177 HIS CE1 C Y N 178 HIS NE2 N Y N 179 HIS OXT O N N 180 HIS H H N N 181 HIS H2 H N N 182 HIS HA H N N 183 HIS HB2 H N N 184 HIS HB3 H N N 185 HIS HD1 H N N 186 HIS HD2 H N N 187 HIS HE1 H N N 188 HIS HE2 H N N 189 HIS HXT H N N 190 HOH O O N N 191 HOH H1 H N N 192 HOH H2 H N N 193 ILE N N N N 194 ILE CA C N S 195 ILE C C N N 196 ILE O O N N 197 ILE CB C N S 198 ILE CG1 C N N 199 ILE CG2 C N N 200 ILE CD1 C N N 201 ILE OXT O N N 202 ILE H H N N 203 ILE H2 H N N 204 ILE HA H N N 205 ILE HB H N N 206 ILE HG12 H N N 207 ILE HG13 H N N 208 ILE HG21 H N N 209 ILE HG22 H N N 210 ILE HG23 H N N 211 ILE HD11 H N N 212 ILE HD12 H N N 213 ILE HD13 H N N 214 ILE HXT H N N 215 LEU N N N N 216 LEU CA C N S 217 LEU C C N N 218 LEU O O N N 219 LEU CB C N N 220 LEU CG C N N 221 LEU CD1 C N N 222 LEU CD2 C N N 223 LEU OXT O N N 224 LEU H H N N 225 LEU H2 H N N 226 LEU HA H N N 227 LEU HB2 H N N 228 LEU HB3 H N N 229 LEU HG H N N 230 LEU HD11 H N N 231 LEU HD12 H N N 232 LEU HD13 H N N 233 LEU HD21 H N N 234 LEU HD22 H N N 235 LEU HD23 H N N 236 LEU HXT H N N 237 LYS N N N N 238 LYS CA C N S 239 LYS C C N N 240 LYS O O N N 241 LYS CB C N N 242 LYS CG C N N 243 LYS CD C N N 244 LYS CE C N N 245 LYS NZ N N N 246 LYS OXT O N N 247 LYS H H N N 248 LYS H2 H N N 249 LYS HA H N N 250 LYS HB2 H N N 251 LYS HB3 H N N 252 LYS HG2 H N N 253 LYS HG3 H N N 254 LYS HD2 H N N 255 LYS HD3 H N N 256 LYS HE2 H N N 257 LYS HE3 H N N 258 LYS HZ1 H N N 259 LYS HZ2 H N N 260 LYS HZ3 H N N 261 LYS HXT H N N 262 MET N N N N 263 MET CA C N S 264 MET C C N N 265 MET O O N N 266 MET CB C N N 267 MET CG C N N 268 MET SD S N N 269 MET CE C N N 270 MET OXT O N N 271 MET H H N N 272 MET H2 H N N 273 MET HA H N N 274 MET HB2 H N N 275 MET HB3 H N N 276 MET HG2 H N N 277 MET HG3 H N N 278 MET HE1 H N N 279 MET HE2 H N N 280 MET HE3 H N N 281 MET HXT H N N 282 PHE N N N N 283 PHE CA C N S 284 PHE C C N N 285 PHE O O N N 286 PHE CB C N N 287 PHE CG C Y N 288 PHE CD1 C Y N 289 PHE CD2 C Y N 290 PHE CE1 C Y N 291 PHE CE2 C Y N 292 PHE CZ C Y N 293 PHE OXT O N N 294 PHE H H N N 295 PHE H2 H N N 296 PHE HA H N N 297 PHE HB2 H N N 298 PHE HB3 H N N 299 PHE HD1 H N N 300 PHE HD2 H N N 301 PHE HE1 H N N 302 PHE HE2 H N N 303 PHE HZ H N N 304 PHE HXT H N N 305 PRO N N N N 306 PRO CA C N S 307 PRO C C N N 308 PRO O O N N 309 PRO CB C N N 310 PRO CG C N N 311 PRO CD C N N 312 PRO OXT O N N 313 PRO H H N N 314 PRO HA H N N 315 PRO HB2 H N N 316 PRO HB3 H N N 317 PRO HG2 H N N 318 PRO HG3 H N N 319 PRO HD2 H N N 320 PRO HD3 H N N 321 PRO HXT H N N 322 SER N N N N 323 SER CA C N S 324 SER C C N N 325 SER O O N N 326 SER CB C N N 327 SER OG O N N 328 SER OXT O N N 329 SER H H N N 330 SER H2 H N N 331 SER HA H N N 332 SER HB2 H N N 333 SER HB3 H N N 334 SER HG H N N 335 SER HXT H N N 336 THR N N N N 337 THR CA C N S 338 THR C C N N 339 THR O O N N 340 THR CB C N R 341 THR OG1 O N N 342 THR CG2 C N N 343 THR OXT O N N 344 THR H H N N 345 THR H2 H N N 346 THR HA H N N 347 THR HB H N N 348 THR HG1 H N N 349 THR HG21 H N N 350 THR HG22 H N N 351 THR HG23 H N N 352 THR HXT H N N 353 TYR N N N N 354 TYR CA C N S 355 TYR C C N N 356 TYR O O N N 357 TYR CB C N N 358 TYR CG C Y N 359 TYR CD1 C Y N 360 TYR CD2 C Y N 361 TYR CE1 C Y N 362 TYR CE2 C Y N 363 TYR CZ C Y N 364 TYR OH O N N 365 TYR OXT O N N 366 TYR H H N N 367 TYR H2 H N N 368 TYR HA H N N 369 TYR HB2 H N N 370 TYR HB3 H N N 371 TYR HD1 H N N 372 TYR HD2 H N N 373 TYR HE1 H N N 374 TYR HE2 H N N 375 TYR HH H N N 376 TYR HXT H N N 377 VAL N N N N 378 VAL CA C N S 379 VAL C C N N 380 VAL O O N N 381 VAL CB C N N 382 VAL CG1 C N N 383 VAL CG2 C N N 384 VAL OXT O N N 385 VAL H H N N 386 VAL H2 H N N 387 VAL HA H N N 388 VAL HB H N N 389 VAL HG11 H N N 390 VAL HG12 H N N 391 VAL HG13 H N N 392 VAL HG21 H N N 393 VAL HG22 H N N 394 VAL HG23 H N N 395 VAL HXT H N N 396 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BG2 BR C8 sing N N 70 BG2 N1 C2 sing N N 71 BG2 N1 C6 sing N N 72 BG2 C2 N2 sing N N 73 BG2 C2 N3 doub N N 74 BG2 N3 C4 sing N N 75 BG2 C4 C5 doub Y N 76 BG2 C4 N9 sing Y N 77 BG2 C5 C6 sing N N 78 BG2 C5 N7 sing Y N 79 BG2 C6 O6 doub N N 80 BG2 N7 C8 doub Y N 81 BG2 C8 N9 sing Y N 82 BG2 N9 "C1'" sing N N 83 BG2 "C1'" "C2'" sing N N 84 BG2 "C1'" "O4'" sing N N 85 BG2 "C2'" "O2'" sing N N 86 BG2 "C2'" "C3'" sing N N 87 BG2 "C3'" "O3'" sing N N 88 BG2 "C3'" "C4'" sing N N 89 BG2 "C4'" "O4'" sing N N 90 BG2 "C4'" "C5'" sing N N 91 BG2 "C5'" "O5'" sing N N 92 BG2 N1 HN1 sing N N 93 BG2 N2 HN2 sing N N 94 BG2 N2 HN2A sing N N 95 BG2 "C1'" "H1'" sing N N 96 BG2 "C2'" "H2'" sing N N 97 BG2 "O2'" "HO2'" sing N N 98 BG2 "C3'" "H3'" sing N N 99 BG2 "O3'" "HO3'" sing N N 100 BG2 "C4'" "H4'" sing N N 101 BG2 "C5'" "H5'" sing N N 102 BG2 "C5'" "H5'A" sing N N 103 BG2 "O5'" "HO5'" sing N N 104 CYS N CA sing N N 105 CYS N H sing N N 106 CYS N H2 sing N N 107 CYS CA C sing N N 108 CYS CA CB sing N N 109 CYS CA HA sing N N 110 CYS C O doub N N 111 CYS C OXT sing N N 112 CYS CB SG sing N N 113 CYS CB HB2 sing N N 114 CYS CB HB3 sing N N 115 CYS SG HG sing N N 116 CYS OXT HXT sing N N 117 GLN N CA sing N N 118 GLN N H sing N N 119 GLN N H2 sing N N 120 GLN CA C sing N N 121 GLN CA CB sing N N 122 GLN CA HA sing N N 123 GLN C O doub N N 124 GLN C OXT sing N N 125 GLN CB CG sing N N 126 GLN CB HB2 sing N N 127 GLN CB HB3 sing N N 128 GLN CG CD sing N N 129 GLN CG HG2 sing N N 130 GLN CG HG3 sing N N 131 GLN CD OE1 doub N N 132 GLN CD NE2 sing N N 133 GLN NE2 HE21 sing N N 134 GLN NE2 HE22 sing N N 135 GLN OXT HXT sing N N 136 GLU N CA sing N N 137 GLU N H sing N N 138 GLU N H2 sing N N 139 GLU CA C sing N N 140 GLU CA CB sing N N 141 GLU CA HA sing N N 142 GLU C O doub N N 143 GLU C OXT sing N N 144 GLU CB CG sing N N 145 GLU CB HB2 sing N N 146 GLU CB HB3 sing N N 147 GLU CG CD sing N N 148 GLU CG HG2 sing N N 149 GLU CG HG3 sing N N 150 GLU CD OE1 doub N N 151 GLU CD OE2 sing N N 152 GLU OE2 HE2 sing N N 153 GLU OXT HXT sing N N 154 GLY N CA sing N N 155 GLY N H sing N N 156 GLY N H2 sing N N 157 GLY CA C sing N N 158 GLY CA HA2 sing N N 159 GLY CA HA3 sing N N 160 GLY C O doub N N 161 GLY C OXT sing N N 162 GLY OXT HXT sing N N 163 HIS N CA sing N N 164 HIS N H sing N N 165 HIS N H2 sing N N 166 HIS CA C sing N N 167 HIS CA CB sing N N 168 HIS CA HA sing N N 169 HIS C O doub N N 170 HIS C OXT sing N N 171 HIS CB CG sing N N 172 HIS CB HB2 sing N N 173 HIS CB HB3 sing N N 174 HIS CG ND1 sing Y N 175 HIS CG CD2 doub Y N 176 HIS ND1 CE1 doub Y N 177 HIS ND1 HD1 sing N N 178 HIS CD2 NE2 sing Y N 179 HIS CD2 HD2 sing N N 180 HIS CE1 NE2 sing Y N 181 HIS CE1 HE1 sing N N 182 HIS NE2 HE2 sing N N 183 HIS OXT HXT sing N N 184 HOH O H1 sing N N 185 HOH O H2 sing N N 186 ILE N CA sing N N 187 ILE N H sing N N 188 ILE N H2 sing N N 189 ILE CA C sing N N 190 ILE CA CB sing N N 191 ILE CA HA sing N N 192 ILE C O doub N N 193 ILE C OXT sing N N 194 ILE CB CG1 sing N N 195 ILE CB CG2 sing N N 196 ILE CB HB sing N N 197 ILE CG1 CD1 sing N N 198 ILE CG1 HG12 sing N N 199 ILE CG1 HG13 sing N N 200 ILE CG2 HG21 sing N N 201 ILE CG2 HG22 sing N N 202 ILE CG2 HG23 sing N N 203 ILE CD1 HD11 sing N N 204 ILE CD1 HD12 sing N N 205 ILE CD1 HD13 sing N N 206 ILE OXT HXT sing N N 207 LEU N CA sing N N 208 LEU N H sing N N 209 LEU N H2 sing N N 210 LEU CA C sing N N 211 LEU CA CB sing N N 212 LEU CA HA sing N N 213 LEU C O doub N N 214 LEU C OXT sing N N 215 LEU CB CG sing N N 216 LEU CB HB2 sing N N 217 LEU CB HB3 sing N N 218 LEU CG CD1 sing N N 219 LEU CG CD2 sing N N 220 LEU CG HG sing N N 221 LEU CD1 HD11 sing N N 222 LEU CD1 HD12 sing N N 223 LEU CD1 HD13 sing N N 224 LEU CD2 HD21 sing N N 225 LEU CD2 HD22 sing N N 226 LEU CD2 HD23 sing N N 227 LEU OXT HXT sing N N 228 LYS N CA sing N N 229 LYS N H sing N N 230 LYS N H2 sing N N 231 LYS CA C sing N N 232 LYS CA CB sing N N 233 LYS CA HA sing N N 234 LYS C O doub N N 235 LYS C OXT sing N N 236 LYS CB CG sing N N 237 LYS CB HB2 sing N N 238 LYS CB HB3 sing N N 239 LYS CG CD sing N N 240 LYS CG HG2 sing N N 241 LYS CG HG3 sing N N 242 LYS CD CE sing N N 243 LYS CD HD2 sing N N 244 LYS CD HD3 sing N N 245 LYS CE NZ sing N N 246 LYS CE HE2 sing N N 247 LYS CE HE3 sing N N 248 LYS NZ HZ1 sing N N 249 LYS NZ HZ2 sing N N 250 LYS NZ HZ3 sing N N 251 LYS OXT HXT sing N N 252 MET N CA sing N N 253 MET N H sing N N 254 MET N H2 sing N N 255 MET CA C sing N N 256 MET CA CB sing N N 257 MET CA HA sing N N 258 MET C O doub N N 259 MET C OXT sing N N 260 MET CB CG sing N N 261 MET CB HB2 sing N N 262 MET CB HB3 sing N N 263 MET CG SD sing N N 264 MET CG HG2 sing N N 265 MET CG HG3 sing N N 266 MET SD CE sing N N 267 MET CE HE1 sing N N 268 MET CE HE2 sing N N 269 MET CE HE3 sing N N 270 MET OXT HXT sing N N 271 PHE N CA sing N N 272 PHE N H sing N N 273 PHE N H2 sing N N 274 PHE CA C sing N N 275 PHE CA CB sing N N 276 PHE CA HA sing N N 277 PHE C O doub N N 278 PHE C OXT sing N N 279 PHE CB CG sing N N 280 PHE CB HB2 sing N N 281 PHE CB HB3 sing N N 282 PHE CG CD1 doub Y N 283 PHE CG CD2 sing Y N 284 PHE CD1 CE1 sing Y N 285 PHE CD1 HD1 sing N N 286 PHE CD2 CE2 doub Y N 287 PHE CD2 HD2 sing N N 288 PHE CE1 CZ doub Y N 289 PHE CE1 HE1 sing N N 290 PHE CE2 CZ sing Y N 291 PHE CE2 HE2 sing N N 292 PHE CZ HZ sing N N 293 PHE OXT HXT sing N N 294 PRO N CA sing N N 295 PRO N CD sing N N 296 PRO N H sing N N 297 PRO CA C sing N N 298 PRO CA CB sing N N 299 PRO CA HA sing N N 300 PRO C O doub N N 301 PRO C OXT sing N N 302 PRO CB CG sing N N 303 PRO CB HB2 sing N N 304 PRO CB HB3 sing N N 305 PRO CG CD sing N N 306 PRO CG HG2 sing N N 307 PRO CG HG3 sing N N 308 PRO CD HD2 sing N N 309 PRO CD HD3 sing N N 310 PRO OXT HXT sing N N 311 SER N CA sing N N 312 SER N H sing N N 313 SER N H2 sing N N 314 SER CA C sing N N 315 SER CA CB sing N N 316 SER CA HA sing N N 317 SER C O doub N N 318 SER C OXT sing N N 319 SER CB OG sing N N 320 SER CB HB2 sing N N 321 SER CB HB3 sing N N 322 SER OG HG sing N N 323 SER OXT HXT sing N N 324 THR N CA sing N N 325 THR N H sing N N 326 THR N H2 sing N N 327 THR CA C sing N N 328 THR CA CB sing N N 329 THR CA HA sing N N 330 THR C O doub N N 331 THR C OXT sing N N 332 THR CB OG1 sing N N 333 THR CB CG2 sing N N 334 THR CB HB sing N N 335 THR OG1 HG1 sing N N 336 THR CG2 HG21 sing N N 337 THR CG2 HG22 sing N N 338 THR CG2 HG23 sing N N 339 THR OXT HXT sing N N 340 TYR N CA sing N N 341 TYR N H sing N N 342 TYR N H2 sing N N 343 TYR CA C sing N N 344 TYR CA CB sing N N 345 TYR CA HA sing N N 346 TYR C O doub N N 347 TYR C OXT sing N N 348 TYR CB CG sing N N 349 TYR CB HB2 sing N N 350 TYR CB HB3 sing N N 351 TYR CG CD1 doub Y N 352 TYR CG CD2 sing Y N 353 TYR CD1 CE1 sing Y N 354 TYR CD1 HD1 sing N N 355 TYR CD2 CE2 doub Y N 356 TYR CD2 HD2 sing N N 357 TYR CE1 CZ doub Y N 358 TYR CE1 HE1 sing N N 359 TYR CE2 CZ sing Y N 360 TYR CE2 HE2 sing N N 361 TYR CZ OH sing N N 362 TYR OH HH sing N N 363 TYR OXT HXT sing N N 364 VAL N CA sing N N 365 VAL N H sing N N 366 VAL N H2 sing N N 367 VAL CA C sing N N 368 VAL CA CB sing N N 369 VAL CA HA sing N N 370 VAL C O doub N N 371 VAL C OXT sing N N 372 VAL CB CG1 sing N N 373 VAL CB CG2 sing N N 374 VAL CB HB sing N N 375 VAL CG1 HG11 sing N N 376 VAL CG1 HG12 sing N N 377 VAL CG1 HG13 sing N N 378 VAL CG2 HG21 sing N N 379 VAL CG2 HG22 sing N N 380 VAL CG2 HG23 sing N N 381 VAL OXT HXT sing N N 382 # _atom_sites.entry_id 4DA8 _atom_sites.fract_transf_matrix[1][1] 0.007366 _atom_sites.fract_transf_matrix[1][2] 0.004253 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008506 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017426 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C N O S # loop_