HEADER TRANSFERASE 12-JAN-12 4DAH OBSLTE 15-MAY-13 4DAH 4JGP TITLE THE CRYSTAL STRUCTURE OF SPORULATION KINASE D SENSOR DOMAIN FROM TITLE 2 BACILLUS SUBTILIS SUBSP IN COMPLEX WITH PYRUVATE AT 2.0A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPORULATION KINASE D; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SENSOR DOMAIN RESIDUES 37-250; COMPND 5 SYNONYM: SENSOR HISTIDINE KINASE D; COMPND 6 EC: 2.7.13.3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 STRAIN: 22430; SOURCE 5 GENE: BSU13660, KIND, YKVD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS ALPHA-BETA-ALPHA STRUCTURE, STRUCTURAL GENOMICS, MIDWEST CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS (MCSG), PSI-BIOLOGY, PAS-LIKE FOLD, HISTIDINE KEYWDS 3 KINASE, EXTRACYTOPLASMIC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.WU,M.SCHIFFER,M.GU,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 2 15-MAY-13 4DAH 1 OBSLTE REVDAT 1 28-MAR-12 4DAH 0 JRNL AUTH R.WU,M.SCHIFFER,M.GU,A.JOACHIMIAK, JRNL AUTH 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) JRNL TITL THE CRYSTAL STRUCTURE OF SPORULATION KINASE D SENSOR DOMAIN JRNL TITL 2 FROM BACILLUS SUBTILIS SUBSP. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.9 REMARK 3 NUMBER OF REFLECTIONS : 63152 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 3161 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.4221 - 5.7706 0.96 2820 145 0.1941 0.1960 REMARK 3 2 5.7706 - 4.5830 1.00 2943 163 0.1491 0.1475 REMARK 3 3 4.5830 - 4.0044 1.00 2944 127 0.1380 0.1716 REMARK 3 4 4.0044 - 3.6386 1.00 2943 163 0.1622 0.2144 REMARK 3 5 3.6386 - 3.3780 1.00 2923 160 0.1826 0.2111 REMARK 3 6 3.3780 - 3.1789 1.00 2956 143 0.1842 0.2534 REMARK 3 7 3.1789 - 3.0198 1.00 2905 160 0.1894 0.2153 REMARK 3 8 3.0198 - 2.8884 1.00 2912 177 0.1945 0.2244 REMARK 3 9 2.8884 - 2.7772 0.99 2951 142 0.1886 0.2768 REMARK 3 10 2.7772 - 2.6814 0.99 2895 157 0.2051 0.2798 REMARK 3 11 2.6814 - 2.5976 0.98 2840 170 0.1921 0.2544 REMARK 3 12 2.5976 - 2.5234 0.97 2856 148 0.2077 0.2341 REMARK 3 13 2.5234 - 2.4570 0.96 2825 142 0.1870 0.2414 REMARK 3 14 2.4570 - 2.3970 0.93 2730 140 0.1953 0.2233 REMARK 3 15 2.3970 - 2.3425 0.91 2678 141 0.1788 0.2276 REMARK 3 16 2.3425 - 2.2927 0.88 2572 145 0.1925 0.2473 REMARK 3 17 2.2927 - 2.2468 0.85 2487 131 0.1948 0.2579 REMARK 3 18 2.2468 - 2.2045 0.79 2325 124 0.1966 0.2265 REMARK 3 19 2.2045 - 2.1651 0.74 2175 113 0.1889 0.2112 REMARK 3 20 2.1651 - 2.1284 0.70 2086 95 0.1817 0.2312 REMARK 3 21 2.1284 - 2.0941 0.65 1901 105 0.1832 0.2398 REMARK 3 22 2.0941 - 2.0618 0.60 1751 82 0.1818 0.2024 REMARK 3 23 2.0618 - 2.0315 0.53 1573 88 0.1910 0.2072 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 40.17 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.490 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.750 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.01880 REMARK 3 B22 (A**2) : -1.60110 REMARK 3 B33 (A**2) : 0.58230 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3406 REMARK 3 ANGLE : 1.043 4609 REMARK 3 CHIRALITY : 0.070 540 REMARK 3 PLANARITY : 0.004 585 REMARK 3 DIHEDRAL : 14.892 1293 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 5:145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 73.4127 62.3588 -21.1014 REMARK 3 T TENSOR REMARK 3 T11: 0.2072 T22: 0.1889 REMARK 3 T33: 0.1329 T12: 0.1224 REMARK 3 T13: -0.0378 T23: -0.0290 REMARK 3 L TENSOR REMARK 3 L11: 1.1513 L22: 1.3713 REMARK 3 L33: 0.8232 L12: -0.9484 REMARK 3 L13: 0.2229 L23: -0.1622 REMARK 3 S TENSOR REMARK 3 S11: 0.2467 S12: 0.2465 S13: -0.1584 REMARK 3 S21: -0.1892 S22: -0.1991 S23: 0.0397 REMARK 3 S31: 0.0185 S32: -0.0262 S33: 0.0572 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 146:207 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.1629 77.5172 -24.5232 REMARK 3 T TENSOR REMARK 3 T11: 0.1439 T22: 0.2316 REMARK 3 T33: 0.1795 T12: 0.0615 REMARK 3 T13: -0.0021 T23: 0.0234 REMARK 3 L TENSOR REMARK 3 L11: 1.2349 L22: 2.2150 REMARK 3 L33: 1.1961 L12: -0.3071 REMARK 3 L13: 0.5200 L23: -0.3367 REMARK 3 S TENSOR REMARK 3 S11: -0.0061 S12: -0.0142 S13: -0.1330 REMARK 3 S21: 0.0232 S22: 0.0182 S23: 0.3533 REMARK 3 S31: -0.0643 S32: -0.2414 S33: 0.0479 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN B AND RESID 3:145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 72.8541 63.3792 2.6924 REMARK 3 T TENSOR REMARK 3 T11: 0.0978 T22: 0.1140 REMARK 3 T33: 0.1162 T12: 0.0323 REMARK 3 T13: 0.0307 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 1.6443 L22: 1.5156 REMARK 3 L33: 1.1038 L12: -1.3733 REMARK 3 L13: 0.1006 L23: -0.1982 REMARK 3 S TENSOR REMARK 3 S11: -0.1152 S12: -0.0957 S13: -0.1224 REMARK 3 S21: 0.0827 S22: 0.0911 S23: -0.0179 REMARK 3 S31: 0.0363 S32: 0.0136 S33: 0.0208 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 146:208 ) REMARK 3 ORIGIN FOR THE GROUP (A): 61.8631 83.3796 5.6791 REMARK 3 T TENSOR REMARK 3 T11: 0.1379 T22: 0.0900 REMARK 3 T33: 0.1238 T12: 0.0222 REMARK 3 T13: 0.0409 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 1.6767 L22: 1.7216 REMARK 3 L33: 1.4223 L12: -0.4624 REMARK 3 L13: 0.0590 L23: -0.0656 REMARK 3 S TENSOR REMARK 3 S11: 0.0251 S12: -0.0312 S13: 0.2060 REMARK 3 S21: 0.0448 S22: 0.0047 S23: -0.1674 REMARK 3 S31: -0.2540 S32: -0.0049 S33: 0.0068 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4DAH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JAN-12. REMARK 100 THE RCSB ID CODE IS RCSB070085. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97924 REMARK 200 MONOCHROMATOR : SI 111, CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36578 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06300 REMARK 200 FOR THE DATA SET : 33.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.63800 REMARK 200 FOR SHELL : 4.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 CACODYLATE:HCL AND 30% (W/V) PEG 8000, PH 6.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.18700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.33900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.07550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.33900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.18700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.07550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 114.56100 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 164.30200 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 45.33900 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -3 REMARK 465 ASN A -2 REMARK 465 ALA A -1 REMARK 465 GLU A 0 REMARK 465 LYS A 1 REMARK 465 GLU A 208 REMARK 465 LEU A 209 REMARK 465 SER A 210 REMARK 465 LYS A 211 REMARK 465 SER A 212 REMARK 465 LEU A 213 REMARK 465 SER B -3 REMARK 465 ASN B -2 REMARK 465 ALA B -1 REMARK 465 GLU B 0 REMARK 465 LYS B 1 REMARK 465 GLU B 2 REMARK 465 LEU B 209 REMARK 465 SER B 210 REMARK 465 LYS B 211 REMARK 465 SER B 212 REMARK 465 LEU B 213 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 2 CG CD OE1 OE2 REMARK 470 GLU B 208 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3 GOL A 303 O HOH A 531 2.02 REMARK 500 O4 PEG B 302 O HOH B 509 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 523 O HOH A 532 3754 1.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 62 35.70 71.22 REMARK 500 SER B 194 49.38 -82.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PYR A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PYR B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DAK RELATED DB: PDB REMARK 900 RELATED ID: 4DBI RELATED DB: PDB REMARK 900 RELATED ID: 4DBJ RELATED DB: PDB REMARK 900 RELATED ID: APC2077.1 RELATED DB: TARGETTRACK DBREF 4DAH A 0 213 UNP O31671 KIND_BACSU 37 250 DBREF 4DAH B 0 213 UNP O31671 KIND_BACSU 37 250 SEQADV 4DAH SER A -3 UNP O31671 EXPRESSION TAG SEQADV 4DAH ASN A -2 UNP O31671 EXPRESSION TAG SEQADV 4DAH ALA A -1 UNP O31671 EXPRESSION TAG SEQADV 4DAH SER B -3 UNP O31671 EXPRESSION TAG SEQADV 4DAH ASN B -2 UNP O31671 EXPRESSION TAG SEQADV 4DAH ALA B -1 UNP O31671 EXPRESSION TAG SEQRES 1 A 217 SER ASN ALA GLU LYS GLU LYS ASP THR ILE ALA ALA GLU SEQRES 2 A 217 HIS LYS GLN GLU ALA SER VAL LEU LEU ASN LEU HIS ARG SEQRES 3 A 217 ASN LYS ILE ASN TYR LEU ILE GLY GLU THR MSE ALA ARG SEQRES 4 A 217 MSE THR SER LEU SER ILE ALA ILE ASP ARG PRO VAL ASP SEQRES 5 A 217 ILE LYS LYS MSE GLN SER ILE LEU GLU LYS THR PHE ASP SEQRES 6 A 217 SER GLU PRO ARG PHE SER GLY LEU TYR PHE LEU ASN ALA SEQRES 7 A 217 LYS GLY ASP VAL THR ALA SER THR THR GLU LEU LYS THR SEQRES 8 A 217 LYS VAL ASN LEU ALA ASP ARG SER PHE PHE ILE LYS ALA SEQRES 9 A 217 LYS GLU THR LYS LYS THR VAL ILE SER ASP SER TYR SER SEQRES 10 A 217 SER ARG ILE THR GLY GLN PRO ILE PHE THR ILE CYS VAL SEQRES 11 A 217 PRO VAL LEU ASP SER LYS ARG ASN VAL THR ASP TYR LEU SEQRES 12 A 217 VAL ALA ALA ILE GLN ILE ASP TYR LEU LYS ASN LEU ILE SEQRES 13 A 217 ASN LEU LEU SER PRO ASP VAL TYR ILE GLU VAL VAL ASN SEQRES 14 A 217 GLN ASP GLY LYS MSE ILE PHE ALA SER GLY GLN ALA SER SEQRES 15 A 217 HIS ALA GLU ASP GLN LYS PRO VAL SER GLY TYR LEU ASP SEQRES 16 A 217 ASP ILE SER TRP ASN MSE LYS VAL TYR PRO ASN PRO VAL SEQRES 17 A 217 THR ILE GLU GLU LEU SER LYS SER LEU SEQRES 1 B 217 SER ASN ALA GLU LYS GLU LYS ASP THR ILE ALA ALA GLU SEQRES 2 B 217 HIS LYS GLN GLU ALA SER VAL LEU LEU ASN LEU HIS ARG SEQRES 3 B 217 ASN LYS ILE ASN TYR LEU ILE GLY GLU THR MSE ALA ARG SEQRES 4 B 217 MSE THR SER LEU SER ILE ALA ILE ASP ARG PRO VAL ASP SEQRES 5 B 217 ILE LYS LYS MSE GLN SER ILE LEU GLU LYS THR PHE ASP SEQRES 6 B 217 SER GLU PRO ARG PHE SER GLY LEU TYR PHE LEU ASN ALA SEQRES 7 B 217 LYS GLY ASP VAL THR ALA SER THR THR GLU LEU LYS THR SEQRES 8 B 217 LYS VAL ASN LEU ALA ASP ARG SER PHE PHE ILE LYS ALA SEQRES 9 B 217 LYS GLU THR LYS LYS THR VAL ILE SER ASP SER TYR SER SEQRES 10 B 217 SER ARG ILE THR GLY GLN PRO ILE PHE THR ILE CYS VAL SEQRES 11 B 217 PRO VAL LEU ASP SER LYS ARG ASN VAL THR ASP TYR LEU SEQRES 12 B 217 VAL ALA ALA ILE GLN ILE ASP TYR LEU LYS ASN LEU ILE SEQRES 13 B 217 ASN LEU LEU SER PRO ASP VAL TYR ILE GLU VAL VAL ASN SEQRES 14 B 217 GLN ASP GLY LYS MSE ILE PHE ALA SER GLY GLN ALA SER SEQRES 15 B 217 HIS ALA GLU ASP GLN LYS PRO VAL SER GLY TYR LEU ASP SEQRES 16 B 217 ASP ILE SER TRP ASN MSE LYS VAL TYR PRO ASN PRO VAL SEQRES 17 B 217 THR ILE GLU GLU LEU SER LYS SER LEU MODRES 4DAH MSE A 33 MET SELENOMETHIONINE MODRES 4DAH MSE A 36 MET SELENOMETHIONINE MODRES 4DAH MSE A 52 MET SELENOMETHIONINE MODRES 4DAH MSE A 170 MET SELENOMETHIONINE MODRES 4DAH MSE A 197 MET SELENOMETHIONINE MODRES 4DAH MSE B 33 MET SELENOMETHIONINE MODRES 4DAH MSE B 36 MET SELENOMETHIONINE MODRES 4DAH MSE B 52 MET SELENOMETHIONINE MODRES 4DAH MSE B 170 MET SELENOMETHIONINE MODRES 4DAH MSE B 197 MET SELENOMETHIONINE HET MSE A 33 8 HET MSE A 36 8 HET MSE A 52 8 HET MSE A 170 8 HET MSE A 197 8 HET MSE B 33 8 HET MSE B 36 8 HET MSE B 52 8 HET MSE B 170 8 HET MSE B 197 8 HET PYR A 301 6 HET GOL A 302 6 HET GOL A 303 6 HET PYR B 301 6 HET PEG B 302 7 HET PEG B 303 7 HET GOL B 304 6 HET GOL B 305 6 HETNAM MSE SELENOMETHIONINE HETNAM PYR PYRUVIC ACID HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 PYR 2(C3 H4 O3) FORMUL 4 GOL 4(C3 H8 O3) FORMUL 7 PEG 2(C4 H10 O3) FORMUL 11 HOH *298(H2 O) HELIX 1 1 GLU A 2 ILE A 43 1 42 HELIX 2 2 ASP A 48 ASP A 61 1 14 HELIX 3 3 ARG A 94 LYS A 104 1 11 HELIX 4 4 ILE A 145 SER A 156 1 12 HELIX 5 5 GLN A 176 GLU A 181 5 6 HELIX 6 6 ASP B 4 ILE B 43 1 40 HELIX 7 7 ASP B 48 ASP B 61 1 14 HELIX 8 8 ARG B 94 LYS B 104 1 11 HELIX 9 9 ILE B 145 SER B 156 1 12 HELIX 10 10 GLN B 176 GLU B 181 5 6 SHEET 1 A 5 VAL A 78 SER A 81 0 SHEET 2 A 5 PHE A 66 ASN A 73 -1 N PHE A 71 O THR A 79 SHEET 3 A 5 VAL A 135 GLN A 144 -1 O VAL A 140 N TYR A 70 SHEET 4 A 5 PRO A 120 LEU A 129 -1 N VAL A 128 O ASP A 137 SHEET 5 A 5 VAL A 107 ILE A 108 -1 N VAL A 107 O CYS A 125 SHEET 1 B 5 VAL A 78 SER A 81 0 SHEET 2 B 5 PHE A 66 ASN A 73 -1 N PHE A 71 O THR A 79 SHEET 3 B 5 VAL A 135 GLN A 144 -1 O VAL A 140 N TYR A 70 SHEET 4 B 5 PRO A 120 LEU A 129 -1 N VAL A 128 O ASP A 137 SHEET 5 B 5 TYR A 112 SER A 113 -1 N TYR A 112 O ILE A 121 SHEET 1 C 4 MSE A 170 SER A 174 0 SHEET 2 C 4 ILE A 161 ASN A 165 -1 N VAL A 163 O ILE A 171 SHEET 3 C 4 TRP A 195 VAL A 199 -1 O LYS A 198 N GLU A 162 SHEET 4 C 4 VAL A 186 TYR A 189 -1 N GLY A 188 O MSE A 197 SHEET 1 D 5 VAL B 78 SER B 81 0 SHEET 2 D 5 PHE B 66 ASN B 73 -1 N PHE B 71 O THR B 79 SHEET 3 D 5 VAL B 135 GLN B 144 -1 O ALA B 142 N SER B 67 SHEET 4 D 5 PRO B 120 LEU B 129 -1 N VAL B 128 O ASP B 137 SHEET 5 D 5 VAL B 107 ILE B 108 -1 N VAL B 107 O CYS B 125 SHEET 1 E 5 VAL B 78 SER B 81 0 SHEET 2 E 5 PHE B 66 ASN B 73 -1 N PHE B 71 O THR B 79 SHEET 3 E 5 VAL B 135 GLN B 144 -1 O ALA B 142 N SER B 67 SHEET 4 E 5 PRO B 120 LEU B 129 -1 N VAL B 128 O ASP B 137 SHEET 5 E 5 TYR B 112 SER B 113 -1 N TYR B 112 O ILE B 121 SHEET 1 F 4 MSE B 170 SER B 174 0 SHEET 2 F 4 ILE B 161 VAL B 164 -1 N ILE B 161 O SER B 174 SHEET 3 F 4 ASN B 196 VAL B 199 -1 O LYS B 198 N GLU B 162 SHEET 4 F 4 VAL B 186 TYR B 189 -1 N VAL B 186 O VAL B 199 LINK C THR A 32 N MSE A 33 1555 1555 1.33 LINK C MSE A 33 N ALA A 34 1555 1555 1.33 LINK C AARG A 35 N MSE A 36 1555 1555 1.33 LINK C BARG A 35 N MSE A 36 1555 1555 1.33 LINK C MSE A 36 N ATHR A 37 1555 1555 1.33 LINK C MSE A 36 N BTHR A 37 1555 1555 1.33 LINK C LYS A 169 N MSE A 170 1555 1555 1.32 LINK C MSE A 170 N ILE A 171 1555 1555 1.33 LINK C ARG B 35 N MSE B 36 1555 1555 1.34 LINK C MSE B 36 N THR B 37 1555 1555 1.33 LINK C LYS B 169 N MSE B 170 1555 1555 1.33 LINK C MSE B 170 N ILE B 171 1555 1555 1.33 LINK C ASN B 196 N MSE B 197 1555 1555 1.33 LINK C MSE B 197 N LYS B 198 1555 1555 1.33 LINK C LYS A 51 N MSE A 52 1555 1555 1.34 LINK C MSE A 52 N GLN A 53 1555 1555 1.33 LINK C ASN A 196 N MSE A 197 1555 1555 1.33 LINK C MSE A 197 N LYS A 198 1555 1555 1.33 LINK C THR B 32 N MSE B 33 1555 1555 1.34 LINK C MSE B 33 N ALA B 34 1555 1555 1.33 LINK C LYS B 51 N MSE B 52 1555 1555 1.33 LINK C MSE B 52 N GLN B 53 1555 1555 1.33 CISPEP 1 ARG A 45 PRO A 46 0 -2.19 CISPEP 2 ARG B 45 PRO B 46 0 -4.87 CISPEP 3 GLU B 207 GLU B 208 0 -3.61 SITE 1 AC1 5 ARG A 94 TYR A 112 SER A 114 ARG A 115 SITE 2 AC1 5 ILE A 116 SITE 1 AC2 8 ARG A 45 PRO A 46 VAL A 47 LEU A 129 SITE 2 AC2 8 ASP A 130 THR A 136 HOH A 465 HOH B 472 SITE 1 AC3 2 SER A 81 HOH A 531 SITE 1 AC4 6 LEU B 91 ARG B 94 TYR B 112 SER B 114 SITE 2 AC4 6 ARG B 115 ILE B 116 SITE 1 AC5 6 SER B 54 TYR B 189 ASP B 191 SER B 194 SITE 2 AC5 6 HOH B 509 HOH B 538 SITE 1 AC6 8 LYS A 51 SER A 54 LYS A 58 ILE B 41 SITE 2 AC6 8 ALA B 42 ILE B 43 ASP B 44 HOH B 469 SITE 1 AC7 3 LYS B 24 HOH B 460 HOH B 500 SITE 1 AC8 8 SER A 131 ASN B 165 GLN B 166 ILE B 193 SITE 2 AC8 8 SER B 194 HOH B 458 HOH B 527 HOH B 546 CRYST1 76.374 82.151 90.678 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013093 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012173 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011028 0.00000