data_4DAV # _entry.id 4DAV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4DAV pdb_00004dav 10.2210/pdb4dav/pdb NDB NA1548 ? ? RCSB RCSB070099 ? ? WWPDB D_1000070099 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4DA2 'Pyrococcus furiosus SfsA' unspecified PDB 4DAP 'E.coli SfsA' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4DAV _pdbx_database_status.recvd_initial_deposition_date 2012-01-13 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Baker, P.J.' 1 'Allen, F.L.' 2 # _citation.id primary _citation.title 'The structure of SfsA and its DNA complex; A DNA/RNA nuclease with a novel domain combination' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Allen, F.L.' 1 ? primary 'Akerboom, J.' 2 ? primary 'Bliss, S.J.' 3 ? primary 'Blombach, F.' 4 ? primary 'Sedelnikova, S.E.' 5 ? primary 'van der Oost, J.' 6 ? primary 'Baker, P.J.' 7 ? # _cell.entry_id 4DAV _cell.length_a 80.700 _cell.length_b 42.690 _cell.length_c 88.900 _cell.angle_alpha 90.00 _cell.angle_beta 104.92 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4DAV _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Sugar fermentation stimulation protein homolog' 26229.098 2 ? L120I ? ? 2 polymer syn "5'-D(*CP*GP*CP*TP*GP*TP*CP*TP*CP*GP*CP*T)-3'" 3605.340 2 ? ? ? ? 3 water nat water 18.015 185 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;AMKLMEVSPLFPCIFLRRVNRFVGLVRIKERIERALITNTGRLNEFMIPGRIGYCTPKAGGKTRYILLGFEDHGKIAIID TRLQGKAFEKIIEKELLPELEGCRIIKREPRVGESRLDYLIECSKGEIFVETKSAVLREGEYAMYPDCPSVRGQRHIKEL IKLARDGKRAMIVFIGALPNVSKFKPYKKGDPKIAELLKEALEAGVEIRALGLHMELSGEIIYRGELGVEI ; ;AMKLMEVSPLFPCIFLRRVNRFVGLVRIKERIERALITNTGRLNEFMIPGRIGYCTPKAGGKTRYILLGFEDHGKIAIID TRLQGKAFEKIIEKELLPELEGCRIIKREPRVGESRLDYLIECSKGEIFVETKSAVLREGEYAMYPDCPSVRGQRHIKEL IKLARDGKRAMIVFIGALPNVSKFKPYKKGDPKIAELLKEALEAGVEIRALGLHMELSGEIIYRGELGVEI ; A,B ? 2 polydeoxyribonucleotide no no '(DC)(DG)(DC)(DT)(DG)(DT)(DC)(DT)(DC)(DG)(DC)(DT)' CGCTGTCTCGCT X,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 MET n 1 3 LYS n 1 4 LEU n 1 5 MET n 1 6 GLU n 1 7 VAL n 1 8 SER n 1 9 PRO n 1 10 LEU n 1 11 PHE n 1 12 PRO n 1 13 CYS n 1 14 ILE n 1 15 PHE n 1 16 LEU n 1 17 ARG n 1 18 ARG n 1 19 VAL n 1 20 ASN n 1 21 ARG n 1 22 PHE n 1 23 VAL n 1 24 GLY n 1 25 LEU n 1 26 VAL n 1 27 ARG n 1 28 ILE n 1 29 LYS n 1 30 GLU n 1 31 ARG n 1 32 ILE n 1 33 GLU n 1 34 ARG n 1 35 ALA n 1 36 LEU n 1 37 ILE n 1 38 THR n 1 39 ASN n 1 40 THR n 1 41 GLY n 1 42 ARG n 1 43 LEU n 1 44 ASN n 1 45 GLU n 1 46 PHE n 1 47 MET n 1 48 ILE n 1 49 PRO n 1 50 GLY n 1 51 ARG n 1 52 ILE n 1 53 GLY n 1 54 TYR n 1 55 CYS n 1 56 THR n 1 57 PRO n 1 58 LYS n 1 59 ALA n 1 60 GLY n 1 61 GLY n 1 62 LYS n 1 63 THR n 1 64 ARG n 1 65 TYR n 1 66 ILE n 1 67 LEU n 1 68 LEU n 1 69 GLY n 1 70 PHE n 1 71 GLU n 1 72 ASP n 1 73 HIS n 1 74 GLY n 1 75 LYS n 1 76 ILE n 1 77 ALA n 1 78 ILE n 1 79 ILE n 1 80 ASP n 1 81 THR n 1 82 ARG n 1 83 LEU n 1 84 GLN n 1 85 GLY n 1 86 LYS n 1 87 ALA n 1 88 PHE n 1 89 GLU n 1 90 LYS n 1 91 ILE n 1 92 ILE n 1 93 GLU n 1 94 LYS n 1 95 GLU n 1 96 LEU n 1 97 LEU n 1 98 PRO n 1 99 GLU n 1 100 LEU n 1 101 GLU n 1 102 GLY n 1 103 CYS n 1 104 ARG n 1 105 ILE n 1 106 ILE n 1 107 LYS n 1 108 ARG n 1 109 GLU n 1 110 PRO n 1 111 ARG n 1 112 VAL n 1 113 GLY n 1 114 GLU n 1 115 SER n 1 116 ARG n 1 117 LEU n 1 118 ASP n 1 119 TYR n 1 120 LEU n 1 121 ILE n 1 122 GLU n 1 123 CYS n 1 124 SER n 1 125 LYS n 1 126 GLY n 1 127 GLU n 1 128 ILE n 1 129 PHE n 1 130 VAL n 1 131 GLU n 1 132 THR n 1 133 LYS n 1 134 SER n 1 135 ALA n 1 136 VAL n 1 137 LEU n 1 138 ARG n 1 139 GLU n 1 140 GLY n 1 141 GLU n 1 142 TYR n 1 143 ALA n 1 144 MET n 1 145 TYR n 1 146 PRO n 1 147 ASP n 1 148 CYS n 1 149 PRO n 1 150 SER n 1 151 VAL n 1 152 ARG n 1 153 GLY n 1 154 GLN n 1 155 ARG n 1 156 HIS n 1 157 ILE n 1 158 LYS n 1 159 GLU n 1 160 LEU n 1 161 ILE n 1 162 LYS n 1 163 LEU n 1 164 ALA n 1 165 ARG n 1 166 ASP n 1 167 GLY n 1 168 LYS n 1 169 ARG n 1 170 ALA n 1 171 MET n 1 172 ILE n 1 173 VAL n 1 174 PHE n 1 175 ILE n 1 176 GLY n 1 177 ALA n 1 178 LEU n 1 179 PRO n 1 180 ASN n 1 181 VAL n 1 182 SER n 1 183 LYS n 1 184 PHE n 1 185 LYS n 1 186 PRO n 1 187 TYR n 1 188 LYS n 1 189 LYS n 1 190 GLY n 1 191 ASP n 1 192 PRO n 1 193 LYS n 1 194 ILE n 1 195 ALA n 1 196 GLU n 1 197 LEU n 1 198 LEU n 1 199 LYS n 1 200 GLU n 1 201 ALA n 1 202 LEU n 1 203 GLU n 1 204 ALA n 1 205 GLY n 1 206 VAL n 1 207 GLU n 1 208 ILE n 1 209 ARG n 1 210 ALA n 1 211 LEU n 1 212 GLY n 1 213 LEU n 1 214 HIS n 1 215 MET n 1 216 GLU n 1 217 LEU n 1 218 SER n 1 219 GLY n 1 220 GLU n 1 221 ILE n 1 222 ILE n 1 223 TYR n 1 224 ARG n 1 225 GLY n 1 226 GLU n 1 227 LEU n 1 228 GLY n 1 229 VAL n 1 230 GLU n 1 231 ILE n 2 1 DC n 2 2 DG n 2 3 DC n 2 4 DT n 2 5 DG n 2 6 DT n 2 7 DC n 2 8 DT n 2 9 DC n 2 10 DG n 2 11 DC n 2 12 DT n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'sfsA, PF1198' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 43587 / DSM 3638 / JCM 8422 / Vc1' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pyrococcus furiosus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 186497 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET24d _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP SFSA_PYRFU Q8U1K8 1 ;MKLMEVSPLFPCIFLRRVNRFVGLVRIKERIERALITNTGRLNEFMIPGRIGYCTPKAGGKTRYILLGFEDHGKIAIIDT RLQGKAFEKIIEKELLPELEGCRIIKREPRVGESRLDYLLECSKGEIFVETKSAVLREGEYAMYPDCPSVRGQRHIKELI KLARDGKRAMIVFIGALPNVSKFKPYKKGDPKIAELLKEALEAGVEIRALGLHMELSGEIIYRGELGVEI ; 1 ? 2 PDB 4DAV 4DAV 2 CGCTGTCTCGCT 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4DAV A 2 ? 231 ? Q8U1K8 1 ? 230 ? 1 230 2 1 4DAV B 2 ? 231 ? Q8U1K8 1 ? 230 ? 1 230 3 2 4DAV X 1 ? 12 ? 4DAV 1 ? 12 ? 1 12 4 2 4DAV D 1 ? 12 ? 4DAV 1 ? 12 ? 1 12 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4DAV ALA A 1 ? UNP Q8U1K8 ? ? 'expression tag' 0 1 1 4DAV ILE A 121 ? UNP Q8U1K8 LEU 120 'engineered mutation' 120 2 2 4DAV ALA B 1 ? UNP Q8U1K8 ? ? 'expression tag' 0 3 2 4DAV ILE B 121 ? UNP Q8U1K8 LEU 120 'engineered mutation' 120 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4DAV _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.48 _exptl_crystal.density_percent_sol 50.40 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 290 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.0 _exptl_crystal_grow.pdbx_details '3.8mM CaCl2 in 6% (w/v) PEG 6000, 0.2 M citric acid, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 290K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2009-06-27 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Diamond beamline I02 monchromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97957200 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I02' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I02 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97957200 # _reflns.entry_id 4DAV _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 43.0 _reflns.d_resolution_high 2.2 _reflns.number_obs 29894 _reflns.number_all 29894 _reflns.percent_possible_obs 99.0 _reflns.pdbx_Rmerge_I_obs 0.09 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.2 _reflns_shell.d_res_low 2.32 _reflns_shell.percent_possible_all 98.7 _reflns_shell.Rmerge_I_obs 0.4 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 3.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4DAV _refine.ls_number_reflns_obs 28390 _refine.ls_number_reflns_all 29894 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 39.07 _refine.ls_d_res_high 2.20 _refine.ls_percent_reflns_obs 98.86 _refine.ls_R_factor_obs 0.24248 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.23963 _refine.ls_R_factor_R_free 0.29788 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1493 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.923 _refine.correlation_coeff_Fo_to_Fc_free 0.885 _refine.B_iso_mean 37.927 _refine.aniso_B[1][1] 0.27 _refine.aniso_B[2][2] -0.77 _refine.aniso_B[3][3] 0.37 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] -0.25 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 4DA2 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.337 _refine.pdbx_overall_ESU_R_Free 0.261 _refine.overall_SU_ML 0.184 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 7.115 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3676 _refine_hist.pdbx_number_atoms_nucleic_acid 474 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 185 _refine_hist.number_atoms_total 4335 _refine_hist.d_res_high 2.20 _refine_hist.d_res_low 39.07 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.009 0.022 ? 4260 ? 'X-RAY DIFFRACTION' r_bond_other_d 0.001 0.020 ? 3000 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.231 2.148 ? 5808 ? 'X-RAY DIFFRACTION' r_angle_other_deg 0.805 3.000 ? 7302 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 6.065 5.000 ? 460 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 31.632 22.179 ? 156 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 14.274 15.000 ? 752 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 15.461 15.000 ? 42 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.064 0.200 ? 648 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.004 0.021 ? 4280 ? 'X-RAY DIFFRACTION' r_gen_planes_other 0.001 0.020 ? 812 ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it 0.700 1.500 ? 2288 ? 'X-RAY DIFFRACTION' r_mcbond_other 0.099 1.500 ? 944 ? 'X-RAY DIFFRACTION' r_mcangle_it 1.305 2.000 ? 3686 ? 'X-RAY DIFFRACTION' r_scbond_it 1.484 3.000 ? 1972 ? 'X-RAY DIFFRACTION' r_scangle_it 2.491 4.500 ? 2122 ? 'X-RAY DIFFRACTION' r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.200 _refine_ls_shell.d_res_low 2.257 _refine_ls_shell.number_reflns_R_work 2045 _refine_ls_shell.R_factor_R_work 0.311 _refine_ls_shell.percent_reflns_obs 97.70 _refine_ls_shell.R_factor_R_free 0.442 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 121 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4DAV _struct.title 'The structure of Pyrococcus Furiosus SfsA in complex with DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4DAV _struct_keywords.pdbx_keywords HYDROLASE/DNA _struct_keywords.text 'OB fold, PD-(D/E)xK domain, nuclease, protein-DNA complex, HYDROLASE-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 80 ? GLU A 95 ? ASP A 79 GLU A 94 1 ? 16 HELX_P HELX_P2 2 LEU A 97 ? GLU A 101 ? LEU A 96 GLU A 100 5 ? 5 HELX_P HELX_P3 3 SER A 150 ? ASP A 166 ? SER A 149 ASP A 165 1 ? 17 HELX_P HELX_P4 4 ASP A 191 ? ALA A 204 ? ASP A 190 ALA A 203 1 ? 14 HELX_P HELX_P5 5 ASP B 80 ? GLU B 95 ? ASP B 79 GLU B 94 1 ? 16 HELX_P HELX_P6 6 SER B 150 ? ASP B 166 ? SER B 149 ASP B 165 1 ? 17 HELX_P HELX_P7 7 ASP B 191 ? GLY B 205 ? ASP B 190 GLY B 204 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? C DT 4 N3 ? ? ? 1_555 D DT 12 O2 ? ? X DT 4 D DT 12 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog2 hydrog ? ? C DT 4 O4 ? ? ? 1_555 D DT 12 N3 ? ? X DT 4 D DT 12 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog3 hydrog ? ? C DG 5 N1 ? ? ? 1_555 D DC 11 N3 ? ? X DG 5 D DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? C DG 5 N2 ? ? ? 1_555 D DC 11 O2 ? ? X DG 5 D DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? C DG 5 O6 ? ? ? 1_555 D DC 11 N4 ? ? X DG 5 D DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? C DT 6 N3 ? ? ? 1_555 D DG 10 O6 ? ? X DT 6 D DG 10 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog7 hydrog ? ? C DT 6 O2 ? ? ? 1_555 D DG 10 N1 ? ? X DT 6 D DG 10 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog8 hydrog ? ? C DC 7 N3 ? ? ? 1_555 D DC 9 N4 ? ? X DC 7 D DC 9 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? hydrog9 hydrog ? ? C DG 10 N1 ? ? ? 1_555 D DT 6 O2 ? ? X DG 10 D DT 6 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog10 hydrog ? ? C DG 10 O6 ? ? ? 1_555 D DT 6 N3 ? ? X DG 10 D DT 6 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog11 hydrog ? ? C DC 11 N3 ? ? ? 1_555 D DG 5 N1 ? ? X DC 11 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? C DC 11 N4 ? ? ? 1_555 D DG 5 O6 ? ? X DC 11 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? C DC 11 O2 ? ? ? 1_555 D DG 5 N2 ? ? X DC 11 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? C DT 12 N3 ? ? ? 1_555 D DT 4 O4 ? ? X DT 12 D DT 4 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog15 hydrog ? ? C DT 12 O2 ? ? ? 1_555 D DT 4 N3 ? ? X DT 12 D DT 4 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 SER 8 A . ? SER 7 A PRO 9 A ? PRO 8 A 1 -15.34 2 TYR 145 A . ? TYR 144 A PRO 146 A ? PRO 145 A 1 -8.01 3 SER 8 B . ? SER 7 B PRO 9 B ? PRO 8 B 1 -11.49 4 TYR 145 B . ? TYR 144 B PRO 146 B ? PRO 145 B 1 -11.51 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 7 ? C ? 2 ? D ? 4 ? E ? 7 ? F ? 7 ? G ? 2 ? H ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? parallel D 3 4 ? parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 3 4 ? parallel E 4 5 ? parallel E 5 6 ? anti-parallel E 6 7 ? anti-parallel F 1 2 ? anti-parallel F 2 3 ? anti-parallel F 3 4 ? anti-parallel F 4 5 ? anti-parallel F 5 6 ? anti-parallel F 6 7 ? parallel G 1 2 ? anti-parallel H 1 2 ? anti-parallel H 2 3 ? parallel H 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 MET A 2 ? GLU A 6 ? MET A 1 GLU A 5 A 2 GLU A 220 ? GLU A 226 ? GLU A 219 GLU A 225 A 3 GLU A 207 ? MET A 215 ? GLU A 206 MET A 214 A 4 ALA A 170 ? GLY A 176 ? ALA A 169 GLY A 175 A 5 GLU A 127 ? SER A 134 ? GLU A 126 SER A 133 A 6 TYR A 119 ? GLU A 122 ? TYR A 118 GLU A 121 A 7 ARG A 104 ? ARG A 108 ? ARG A 103 ARG A 107 B 1 LYS A 75 ? ILE A 78 ? LYS A 74 ILE A 77 B 2 TYR A 65 ? ASP A 72 ? TYR A 64 ASP A 71 B 3 ILE A 52 ? PRO A 57 ? ILE A 51 PRO A 56 B 4 PHE A 11 ? ASN A 20 ? PHE A 10 ASN A 19 B 5 VAL A 23 ? ILE A 28 ? VAL A 22 ILE A 27 B 6 ARG A 31 ? LEU A 36 ? ARG A 30 LEU A 35 B 7 TYR A 65 ? ASP A 72 ? TYR A 64 ASP A 71 C 1 ARG A 111 ? VAL A 112 ? ARG A 110 VAL A 111 C 2 SER A 115 ? ARG A 116 ? SER A 114 ARG A 115 D 1 LEU A 137 ? GLU A 139 ? LEU A 136 GLU A 138 D 2 TYR A 142 ? TYR A 145 ? TYR A 141 TYR A 144 D 3 LYS A 183 ? PRO A 186 ? LYS A 182 PRO A 185 D 4 GLY A 228 ? VAL A 229 ? GLY A 227 VAL A 228 E 1 MET B 2 ? GLU B 6 ? MET B 1 GLU B 5 E 2 GLU B 220 ? GLU B 226 ? GLU B 219 GLU B 225 E 3 GLU B 207 ? MET B 215 ? GLU B 206 MET B 214 E 4 ARG B 169 ? GLY B 176 ? ARG B 168 GLY B 175 E 5 GLU B 127 ? SER B 134 ? GLU B 126 SER B 133 E 6 TYR B 119 ? GLU B 122 ? TYR B 118 GLU B 121 E 7 ARG B 104 ? ARG B 108 ? ARG B 103 ARG B 107 F 1 LYS B 75 ? ILE B 78 ? LYS B 74 ILE B 77 F 2 TYR B 65 ? ASP B 72 ? TYR B 64 ASP B 71 F 3 ILE B 52 ? PRO B 57 ? ILE B 51 PRO B 56 F 4 PHE B 11 ? ASN B 20 ? PHE B 10 ASN B 19 F 5 VAL B 23 ? ILE B 28 ? VAL B 22 ILE B 27 F 6 ARG B 31 ? LEU B 36 ? ARG B 30 LEU B 35 F 7 TYR B 65 ? ASP B 72 ? TYR B 64 ASP B 71 G 1 ARG B 111 ? VAL B 112 ? ARG B 110 VAL B 111 G 2 SER B 115 ? ARG B 116 ? SER B 114 ARG B 115 H 1 LEU B 137 ? GLU B 139 ? LEU B 136 GLU B 138 H 2 TYR B 142 ? TYR B 145 ? TYR B 141 TYR B 144 H 3 LYS B 183 ? PRO B 186 ? LYS B 182 PRO B 185 H 4 GLY B 228 ? VAL B 229 ? GLY B 227 VAL B 228 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N MET A 2 ? N MET A 1 O TYR A 223 ? O TYR A 222 A 2 3 O ARG A 224 ? O ARG A 223 N GLY A 212 ? N GLY A 211 A 3 4 O LEU A 211 ? O LEU A 210 N PHE A 174 ? N PHE A 173 A 4 5 O ILE A 175 ? O ILE A 174 N LYS A 133 ? N LYS A 132 A 5 6 O ILE A 128 ? O ILE A 127 N ILE A 121 ? N ILE A 120 A 6 7 O GLU A 122 ? O GLU A 121 N ARG A 104 ? N ARG A 103 B 1 2 O ALA A 77 ? O ALA A 76 N PHE A 70 ? N PHE A 69 B 2 3 O GLU A 71 ? O GLU A 70 N ILE A 52 ? N ILE A 51 B 3 4 O CYS A 55 ? O CYS A 54 N PHE A 11 ? N PHE A 10 B 4 5 N ARG A 17 ? N ARG A 16 O LEU A 25 ? O LEU A 24 B 5 6 N GLY A 24 ? N GLY A 23 O ALA A 35 ? O ALA A 34 B 6 7 N LEU A 36 ? N LEU A 35 O TYR A 65 ? O TYR A 64 C 1 2 N VAL A 112 ? N VAL A 111 O SER A 115 ? O SER A 114 D 1 2 N GLU A 139 ? N GLU A 138 O TYR A 142 ? O TYR A 141 D 2 3 N ALA A 143 ? N ALA A 142 O LYS A 183 ? O LYS A 182 D 3 4 N PHE A 184 ? N PHE A 183 O GLY A 228 ? O GLY A 227 E 1 2 N MET B 2 ? N MET B 1 O TYR B 223 ? O TYR B 222 E 2 3 O ILE B 222 ? O ILE B 221 N HIS B 214 ? N HIS B 213 E 3 4 O ARG B 209 ? O ARG B 208 N ILE B 172 ? N ILE B 171 E 4 5 O ILE B 175 ? O ILE B 174 N LYS B 133 ? N LYS B 132 E 5 6 O ILE B 128 ? O ILE B 127 N ILE B 121 ? N ILE B 120 E 6 7 O GLU B 122 ? O GLU B 121 N ARG B 104 ? N ARG B 103 F 1 2 O ALA B 77 ? O ALA B 76 N PHE B 70 ? N PHE B 69 F 2 3 O GLY B 69 ? O GLY B 68 N TYR B 54 ? N TYR B 53 F 3 4 O CYS B 55 ? O CYS B 54 N PHE B 11 ? N PHE B 10 F 4 5 N ARG B 17 ? N ARG B 16 O LEU B 25 ? O LEU B 24 F 5 6 N GLY B 24 ? N GLY B 23 O ALA B 35 ? O ALA B 34 F 6 7 N LEU B 36 ? N LEU B 35 O TYR B 65 ? O TYR B 64 G 1 2 N VAL B 112 ? N VAL B 111 O SER B 115 ? O SER B 114 H 1 2 N GLU B 139 ? N GLU B 138 O TYR B 142 ? O TYR B 141 H 2 3 N ALA B 143 ? N ALA B 142 O LYS B 183 ? O LYS B 182 H 3 4 N PHE B 184 ? N PHE B 183 O GLY B 228 ? O GLY B 227 # _database_PDB_matrix.entry_id 4DAV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4DAV _atom_sites.fract_transf_matrix[1][1] 0.012392 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.003302 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023425 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011641 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 0 0 ALA ALA A . n A 1 2 MET 2 1 1 MET MET A . n A 1 3 LYS 3 2 2 LYS LYS A . n A 1 4 LEU 4 3 3 LEU LEU A . n A 1 5 MET 5 4 4 MET MET A . n A 1 6 GLU 6 5 5 GLU GLU A . n A 1 7 VAL 7 6 6 VAL VAL A . n A 1 8 SER 8 7 7 SER SER A . n A 1 9 PRO 9 8 8 PRO PRO A . n A 1 10 LEU 10 9 9 LEU LEU A . n A 1 11 PHE 11 10 10 PHE PHE A . n A 1 12 PRO 12 11 11 PRO PRO A . n A 1 13 CYS 13 12 12 CYS CYS A . n A 1 14 ILE 14 13 13 ILE ILE A . n A 1 15 PHE 15 14 14 PHE PHE A . n A 1 16 LEU 16 15 15 LEU LEU A . n A 1 17 ARG 17 16 16 ARG ARG A . n A 1 18 ARG 18 17 17 ARG ARG A . n A 1 19 VAL 19 18 18 VAL VAL A . n A 1 20 ASN 20 19 19 ASN ASN A . n A 1 21 ARG 21 20 20 ARG ARG A . n A 1 22 PHE 22 21 21 PHE PHE A . n A 1 23 VAL 23 22 22 VAL VAL A . n A 1 24 GLY 24 23 23 GLY GLY A . n A 1 25 LEU 25 24 24 LEU LEU A . n A 1 26 VAL 26 25 25 VAL VAL A . n A 1 27 ARG 27 26 26 ARG ARG A . n A 1 28 ILE 28 27 27 ILE ILE A . n A 1 29 LYS 29 28 28 LYS LYS A . n A 1 30 GLU 30 29 29 GLU GLU A . n A 1 31 ARG 31 30 30 ARG ARG A . n A 1 32 ILE 32 31 31 ILE ILE A . n A 1 33 GLU 33 32 32 GLU GLU A . n A 1 34 ARG 34 33 33 ARG ARG A . n A 1 35 ALA 35 34 34 ALA ALA A . n A 1 36 LEU 36 35 35 LEU LEU A . n A 1 37 ILE 37 36 36 ILE ILE A . n A 1 38 THR 38 37 37 THR THR A . n A 1 39 ASN 39 38 38 ASN ASN A . n A 1 40 THR 40 39 39 THR THR A . n A 1 41 GLY 41 40 40 GLY GLY A . n A 1 42 ARG 42 41 41 ARG ARG A . n A 1 43 LEU 43 42 42 LEU LEU A . n A 1 44 ASN 44 43 43 ASN ASN A . n A 1 45 GLU 45 44 44 GLU GLU A . n A 1 46 PHE 46 45 45 PHE PHE A . n A 1 47 MET 47 46 46 MET MET A . n A 1 48 ILE 48 47 47 ILE ILE A . n A 1 49 PRO 49 48 48 PRO PRO A . n A 1 50 GLY 50 49 49 GLY GLY A . n A 1 51 ARG 51 50 50 ARG ARG A . n A 1 52 ILE 52 51 51 ILE ILE A . n A 1 53 GLY 53 52 52 GLY GLY A . n A 1 54 TYR 54 53 53 TYR TYR A . n A 1 55 CYS 55 54 54 CYS CYS A . n A 1 56 THR 56 55 55 THR THR A . n A 1 57 PRO 57 56 56 PRO PRO A . n A 1 58 LYS 58 57 57 LYS LYS A . n A 1 59 ALA 59 58 58 ALA ALA A . n A 1 60 GLY 60 59 59 GLY GLY A . n A 1 61 GLY 61 60 60 GLY GLY A . n A 1 62 LYS 62 61 61 LYS LYS A . n A 1 63 THR 63 62 62 THR THR A . n A 1 64 ARG 64 63 63 ARG ARG A . n A 1 65 TYR 65 64 64 TYR TYR A . n A 1 66 ILE 66 65 65 ILE ILE A . n A 1 67 LEU 67 66 66 LEU LEU A . n A 1 68 LEU 68 67 67 LEU LEU A . n A 1 69 GLY 69 68 68 GLY GLY A . n A 1 70 PHE 70 69 69 PHE PHE A . n A 1 71 GLU 71 70 70 GLU GLU A . n A 1 72 ASP 72 71 71 ASP ASP A . n A 1 73 HIS 73 72 72 HIS HIS A . n A 1 74 GLY 74 73 73 GLY GLY A . n A 1 75 LYS 75 74 74 LYS LYS A . n A 1 76 ILE 76 75 75 ILE ILE A . n A 1 77 ALA 77 76 76 ALA ALA A . n A 1 78 ILE 78 77 77 ILE ILE A . n A 1 79 ILE 79 78 78 ILE ILE A . n A 1 80 ASP 80 79 79 ASP ASP A . n A 1 81 THR 81 80 80 THR THR A . n A 1 82 ARG 82 81 81 ARG ARG A . n A 1 83 LEU 83 82 82 LEU LEU A . n A 1 84 GLN 84 83 83 GLN GLN A . n A 1 85 GLY 85 84 84 GLY GLY A . n A 1 86 LYS 86 85 85 LYS LYS A . n A 1 87 ALA 87 86 86 ALA ALA A . n A 1 88 PHE 88 87 87 PHE PHE A . n A 1 89 GLU 89 88 88 GLU GLU A . n A 1 90 LYS 90 89 89 LYS LYS A . n A 1 91 ILE 91 90 90 ILE ILE A . n A 1 92 ILE 92 91 91 ILE ILE A . n A 1 93 GLU 93 92 92 GLU GLU A . n A 1 94 LYS 94 93 93 LYS LYS A . n A 1 95 GLU 95 94 94 GLU GLU A . n A 1 96 LEU 96 95 95 LEU LEU A . n A 1 97 LEU 97 96 96 LEU LEU A . n A 1 98 PRO 98 97 97 PRO PRO A . n A 1 99 GLU 99 98 98 GLU GLU A . n A 1 100 LEU 100 99 99 LEU LEU A . n A 1 101 GLU 101 100 100 GLU GLU A . n A 1 102 GLY 102 101 101 GLY GLY A . n A 1 103 CYS 103 102 102 CYS CYS A . n A 1 104 ARG 104 103 103 ARG ARG A . n A 1 105 ILE 105 104 104 ILE ILE A . n A 1 106 ILE 106 105 105 ILE ILE A . n A 1 107 LYS 107 106 106 LYS LYS A . n A 1 108 ARG 108 107 107 ARG ARG A . n A 1 109 GLU 109 108 108 GLU GLU A . n A 1 110 PRO 110 109 109 PRO PRO A . n A 1 111 ARG 111 110 110 ARG ARG A . n A 1 112 VAL 112 111 111 VAL VAL A . n A 1 113 GLY 113 112 112 GLY GLY A . n A 1 114 GLU 114 113 113 GLU GLU A . n A 1 115 SER 115 114 114 SER SER A . n A 1 116 ARG 116 115 115 ARG ARG A . n A 1 117 LEU 117 116 116 LEU LEU A . n A 1 118 ASP 118 117 117 ASP ASP A . n A 1 119 TYR 119 118 118 TYR TYR A . n A 1 120 LEU 120 119 119 LEU LEU A . n A 1 121 ILE 121 120 120 ILE ILE A . n A 1 122 GLU 122 121 121 GLU GLU A . n A 1 123 CYS 123 122 122 CYS CYS A . n A 1 124 SER 124 123 123 SER SER A . n A 1 125 LYS 125 124 124 LYS LYS A . n A 1 126 GLY 126 125 125 GLY GLY A . n A 1 127 GLU 127 126 126 GLU GLU A . n A 1 128 ILE 128 127 127 ILE ILE A . n A 1 129 PHE 129 128 128 PHE PHE A . n A 1 130 VAL 130 129 129 VAL VAL A . n A 1 131 GLU 131 130 130 GLU GLU A . n A 1 132 THR 132 131 131 THR THR A . n A 1 133 LYS 133 132 132 LYS LYS A . n A 1 134 SER 134 133 133 SER SER A . n A 1 135 ALA 135 134 134 ALA ALA A . n A 1 136 VAL 136 135 135 VAL VAL A . n A 1 137 LEU 137 136 136 LEU LEU A . n A 1 138 ARG 138 137 137 ARG ARG A . n A 1 139 GLU 139 138 138 GLU GLU A . n A 1 140 GLY 140 139 139 GLY GLY A . n A 1 141 GLU 141 140 140 GLU GLU A . n A 1 142 TYR 142 141 141 TYR TYR A . n A 1 143 ALA 143 142 142 ALA ALA A . n A 1 144 MET 144 143 143 MET MET A . n A 1 145 TYR 145 144 144 TYR TYR A . n A 1 146 PRO 146 145 145 PRO PRO A . n A 1 147 ASP 147 146 146 ASP ASP A . n A 1 148 CYS 148 147 147 CYS CYS A . n A 1 149 PRO 149 148 148 PRO PRO A . n A 1 150 SER 150 149 149 SER SER A . n A 1 151 VAL 151 150 150 VAL VAL A . n A 1 152 ARG 152 151 151 ARG ARG A . n A 1 153 GLY 153 152 152 GLY GLY A . n A 1 154 GLN 154 153 153 GLN GLN A . n A 1 155 ARG 155 154 154 ARG ARG A . n A 1 156 HIS 156 155 155 HIS HIS A . n A 1 157 ILE 157 156 156 ILE ILE A . n A 1 158 LYS 158 157 157 LYS LYS A . n A 1 159 GLU 159 158 158 GLU GLU A . n A 1 160 LEU 160 159 159 LEU LEU A . n A 1 161 ILE 161 160 160 ILE ILE A . n A 1 162 LYS 162 161 161 LYS LYS A . n A 1 163 LEU 163 162 162 LEU LEU A . n A 1 164 ALA 164 163 163 ALA ALA A . n A 1 165 ARG 165 164 164 ARG ARG A . n A 1 166 ASP 166 165 165 ASP ASP A . n A 1 167 GLY 167 166 166 GLY GLY A . n A 1 168 LYS 168 167 167 LYS LYS A . n A 1 169 ARG 169 168 168 ARG ARG A . n A 1 170 ALA 170 169 169 ALA ALA A . n A 1 171 MET 171 170 170 MET MET A . n A 1 172 ILE 172 171 171 ILE ILE A . n A 1 173 VAL 173 172 172 VAL VAL A . n A 1 174 PHE 174 173 173 PHE PHE A . n A 1 175 ILE 175 174 174 ILE ILE A . n A 1 176 GLY 176 175 175 GLY GLY A . n A 1 177 ALA 177 176 176 ALA ALA A . n A 1 178 LEU 178 177 177 LEU LEU A . n A 1 179 PRO 179 178 178 PRO PRO A . n A 1 180 ASN 180 179 179 ASN ASN A . n A 1 181 VAL 181 180 180 VAL VAL A . n A 1 182 SER 182 181 181 SER SER A . n A 1 183 LYS 183 182 182 LYS LYS A . n A 1 184 PHE 184 183 183 PHE PHE A . n A 1 185 LYS 185 184 184 LYS LYS A . n A 1 186 PRO 186 185 185 PRO PRO A . n A 1 187 TYR 187 186 186 TYR TYR A . n A 1 188 LYS 188 187 187 LYS LYS A . n A 1 189 LYS 189 188 188 LYS LYS A . n A 1 190 GLY 190 189 189 GLY GLY A . n A 1 191 ASP 191 190 190 ASP ASP A . n A 1 192 PRO 192 191 191 PRO PRO A . n A 1 193 LYS 193 192 192 LYS LYS A . n A 1 194 ILE 194 193 193 ILE ILE A . n A 1 195 ALA 195 194 194 ALA ALA A . n A 1 196 GLU 196 195 195 GLU GLU A . n A 1 197 LEU 197 196 196 LEU LEU A . n A 1 198 LEU 198 197 197 LEU LEU A . n A 1 199 LYS 199 198 198 LYS LYS A . n A 1 200 GLU 200 199 199 GLU GLU A . n A 1 201 ALA 201 200 200 ALA ALA A . n A 1 202 LEU 202 201 201 LEU LEU A . n A 1 203 GLU 203 202 202 GLU GLU A . n A 1 204 ALA 204 203 203 ALA ALA A . n A 1 205 GLY 205 204 204 GLY GLY A . n A 1 206 VAL 206 205 205 VAL VAL A . n A 1 207 GLU 207 206 206 GLU GLU A . n A 1 208 ILE 208 207 207 ILE ILE A . n A 1 209 ARG 209 208 208 ARG ARG A . n A 1 210 ALA 210 209 209 ALA ALA A . n A 1 211 LEU 211 210 210 LEU LEU A . n A 1 212 GLY 212 211 211 GLY GLY A . n A 1 213 LEU 213 212 212 LEU LEU A . n A 1 214 HIS 214 213 213 HIS HIS A . n A 1 215 MET 215 214 214 MET MET A . n A 1 216 GLU 216 215 215 GLU GLU A . n A 1 217 LEU 217 216 216 LEU LEU A . n A 1 218 SER 218 217 217 SER SER A . n A 1 219 GLY 219 218 218 GLY GLY A . n A 1 220 GLU 220 219 219 GLU GLU A . n A 1 221 ILE 221 220 220 ILE ILE A . n A 1 222 ILE 222 221 221 ILE ILE A . n A 1 223 TYR 223 222 222 TYR TYR A . n A 1 224 ARG 224 223 223 ARG ARG A . n A 1 225 GLY 225 224 224 GLY GLY A . n A 1 226 GLU 226 225 225 GLU GLU A . n A 1 227 LEU 227 226 226 LEU LEU A . n A 1 228 GLY 228 227 227 GLY GLY A . n A 1 229 VAL 229 228 228 VAL VAL A . n A 1 230 GLU 230 229 229 GLU GLU A . n A 1 231 ILE 231 230 230 ILE ILE A . n B 1 1 ALA 1 0 0 ALA ALA B . n B 1 2 MET 2 1 1 MET MET B . n B 1 3 LYS 3 2 2 LYS LYS B . n B 1 4 LEU 4 3 3 LEU LEU B . n B 1 5 MET 5 4 4 MET MET B . n B 1 6 GLU 6 5 5 GLU GLU B . n B 1 7 VAL 7 6 6 VAL VAL B . n B 1 8 SER 8 7 7 SER SER B . n B 1 9 PRO 9 8 8 PRO PRO B . n B 1 10 LEU 10 9 9 LEU LEU B . n B 1 11 PHE 11 10 10 PHE PHE B . n B 1 12 PRO 12 11 11 PRO PRO B . n B 1 13 CYS 13 12 12 CYS CYS B . n B 1 14 ILE 14 13 13 ILE ILE B . n B 1 15 PHE 15 14 14 PHE PHE B . n B 1 16 LEU 16 15 15 LEU LEU B . n B 1 17 ARG 17 16 16 ARG ARG B . n B 1 18 ARG 18 17 17 ARG ARG B . n B 1 19 VAL 19 18 18 VAL VAL B . n B 1 20 ASN 20 19 19 ASN ASN B . n B 1 21 ARG 21 20 20 ARG ARG B . n B 1 22 PHE 22 21 21 PHE PHE B . n B 1 23 VAL 23 22 22 VAL VAL B . n B 1 24 GLY 24 23 23 GLY GLY B . n B 1 25 LEU 25 24 24 LEU LEU B . n B 1 26 VAL 26 25 25 VAL VAL B . n B 1 27 ARG 27 26 26 ARG ARG B . n B 1 28 ILE 28 27 27 ILE ILE B . n B 1 29 LYS 29 28 28 LYS LYS B . n B 1 30 GLU 30 29 29 GLU GLU B . n B 1 31 ARG 31 30 30 ARG ARG B . n B 1 32 ILE 32 31 31 ILE ILE B . n B 1 33 GLU 33 32 32 GLU GLU B . n B 1 34 ARG 34 33 33 ARG ARG B . n B 1 35 ALA 35 34 34 ALA ALA B . n B 1 36 LEU 36 35 35 LEU LEU B . n B 1 37 ILE 37 36 36 ILE ILE B . n B 1 38 THR 38 37 37 THR THR B . n B 1 39 ASN 39 38 38 ASN ASN B . n B 1 40 THR 40 39 39 THR THR B . n B 1 41 GLY 41 40 40 GLY GLY B . n B 1 42 ARG 42 41 41 ARG ARG B . n B 1 43 LEU 43 42 42 LEU LEU B . n B 1 44 ASN 44 43 43 ASN ASN B . n B 1 45 GLU 45 44 44 GLU GLU B . n B 1 46 PHE 46 45 45 PHE PHE B . n B 1 47 MET 47 46 46 MET MET B . n B 1 48 ILE 48 47 47 ILE ILE B . n B 1 49 PRO 49 48 48 PRO PRO B . n B 1 50 GLY 50 49 49 GLY GLY B . n B 1 51 ARG 51 50 50 ARG ARG B . n B 1 52 ILE 52 51 51 ILE ILE B . n B 1 53 GLY 53 52 52 GLY GLY B . n B 1 54 TYR 54 53 53 TYR TYR B . n B 1 55 CYS 55 54 54 CYS CYS B . n B 1 56 THR 56 55 55 THR THR B . n B 1 57 PRO 57 56 56 PRO PRO B . n B 1 58 LYS 58 57 57 LYS LYS B . n B 1 59 ALA 59 58 58 ALA ALA B . n B 1 60 GLY 60 59 59 GLY GLY B . n B 1 61 GLY 61 60 60 GLY GLY B . n B 1 62 LYS 62 61 61 LYS LYS B . n B 1 63 THR 63 62 62 THR THR B . n B 1 64 ARG 64 63 63 ARG ARG B . n B 1 65 TYR 65 64 64 TYR TYR B . n B 1 66 ILE 66 65 65 ILE ILE B . n B 1 67 LEU 67 66 66 LEU LEU B . n B 1 68 LEU 68 67 67 LEU LEU B . n B 1 69 GLY 69 68 68 GLY GLY B . n B 1 70 PHE 70 69 69 PHE PHE B . n B 1 71 GLU 71 70 70 GLU GLU B . n B 1 72 ASP 72 71 71 ASP ASP B . n B 1 73 HIS 73 72 72 HIS HIS B . n B 1 74 GLY 74 73 73 GLY GLY B . n B 1 75 LYS 75 74 74 LYS LYS B . n B 1 76 ILE 76 75 75 ILE ILE B . n B 1 77 ALA 77 76 76 ALA ALA B . n B 1 78 ILE 78 77 77 ILE ILE B . n B 1 79 ILE 79 78 78 ILE ILE B . n B 1 80 ASP 80 79 79 ASP ASP B . n B 1 81 THR 81 80 80 THR THR B . n B 1 82 ARG 82 81 81 ARG ARG B . n B 1 83 LEU 83 82 82 LEU LEU B . n B 1 84 GLN 84 83 83 GLN GLN B . n B 1 85 GLY 85 84 84 GLY GLY B . n B 1 86 LYS 86 85 85 LYS LYS B . n B 1 87 ALA 87 86 86 ALA ALA B . n B 1 88 PHE 88 87 87 PHE PHE B . n B 1 89 GLU 89 88 88 GLU GLU B . n B 1 90 LYS 90 89 89 LYS LYS B . n B 1 91 ILE 91 90 90 ILE ILE B . n B 1 92 ILE 92 91 91 ILE ILE B . n B 1 93 GLU 93 92 92 GLU GLU B . n B 1 94 LYS 94 93 93 LYS LYS B . n B 1 95 GLU 95 94 94 GLU GLU B . n B 1 96 LEU 96 95 95 LEU LEU B . n B 1 97 LEU 97 96 96 LEU LEU B . n B 1 98 PRO 98 97 97 PRO PRO B . n B 1 99 GLU 99 98 98 GLU GLU B . n B 1 100 LEU 100 99 99 LEU LEU B . n B 1 101 GLU 101 100 100 GLU GLU B . n B 1 102 GLY 102 101 101 GLY GLY B . n B 1 103 CYS 103 102 102 CYS CYS B . n B 1 104 ARG 104 103 103 ARG ARG B . n B 1 105 ILE 105 104 104 ILE ILE B . n B 1 106 ILE 106 105 105 ILE ILE B . n B 1 107 LYS 107 106 106 LYS LYS B . n B 1 108 ARG 108 107 107 ARG ARG B . n B 1 109 GLU 109 108 108 GLU GLU B . n B 1 110 PRO 110 109 109 PRO PRO B . n B 1 111 ARG 111 110 110 ARG ARG B . n B 1 112 VAL 112 111 111 VAL VAL B . n B 1 113 GLY 113 112 112 GLY GLY B . n B 1 114 GLU 114 113 113 GLU GLU B . n B 1 115 SER 115 114 114 SER SER B . n B 1 116 ARG 116 115 115 ARG ARG B . n B 1 117 LEU 117 116 116 LEU LEU B . n B 1 118 ASP 118 117 117 ASP ASP B . n B 1 119 TYR 119 118 118 TYR TYR B . n B 1 120 LEU 120 119 119 LEU LEU B . n B 1 121 ILE 121 120 120 ILE ILE B . n B 1 122 GLU 122 121 121 GLU GLU B . n B 1 123 CYS 123 122 122 CYS CYS B . n B 1 124 SER 124 123 123 SER SER B . n B 1 125 LYS 125 124 124 LYS LYS B . n B 1 126 GLY 126 125 125 GLY GLY B . n B 1 127 GLU 127 126 126 GLU GLU B . n B 1 128 ILE 128 127 127 ILE ILE B . n B 1 129 PHE 129 128 128 PHE PHE B . n B 1 130 VAL 130 129 129 VAL VAL B . n B 1 131 GLU 131 130 130 GLU GLU B . n B 1 132 THR 132 131 131 THR THR B . n B 1 133 LYS 133 132 132 LYS LYS B . n B 1 134 SER 134 133 133 SER SER B . n B 1 135 ALA 135 134 134 ALA ALA B . n B 1 136 VAL 136 135 135 VAL VAL B . n B 1 137 LEU 137 136 136 LEU LEU B . n B 1 138 ARG 138 137 137 ARG ARG B . n B 1 139 GLU 139 138 138 GLU GLU B . n B 1 140 GLY 140 139 139 GLY GLY B . n B 1 141 GLU 141 140 140 GLU GLU B . n B 1 142 TYR 142 141 141 TYR TYR B . n B 1 143 ALA 143 142 142 ALA ALA B . n B 1 144 MET 144 143 143 MET MET B . n B 1 145 TYR 145 144 144 TYR TYR B . n B 1 146 PRO 146 145 145 PRO PRO B . n B 1 147 ASP 147 146 146 ASP ASP B . n B 1 148 CYS 148 147 147 CYS CYS B . n B 1 149 PRO 149 148 148 PRO PRO B . n B 1 150 SER 150 149 149 SER SER B . n B 1 151 VAL 151 150 150 VAL VAL B . n B 1 152 ARG 152 151 151 ARG ARG B . n B 1 153 GLY 153 152 152 GLY GLY B . n B 1 154 GLN 154 153 153 GLN GLN B . n B 1 155 ARG 155 154 154 ARG ARG B . n B 1 156 HIS 156 155 155 HIS HIS B . n B 1 157 ILE 157 156 156 ILE ILE B . n B 1 158 LYS 158 157 157 LYS LYS B . n B 1 159 GLU 159 158 158 GLU GLU B . n B 1 160 LEU 160 159 159 LEU LEU B . n B 1 161 ILE 161 160 160 ILE ILE B . n B 1 162 LYS 162 161 161 LYS LYS B . n B 1 163 LEU 163 162 162 LEU LEU B . n B 1 164 ALA 164 163 163 ALA ALA B . n B 1 165 ARG 165 164 164 ARG ARG B . n B 1 166 ASP 166 165 165 ASP ASP B . n B 1 167 GLY 167 166 166 GLY GLY B . n B 1 168 LYS 168 167 167 LYS LYS B . n B 1 169 ARG 169 168 168 ARG ARG B . n B 1 170 ALA 170 169 169 ALA ALA B . n B 1 171 MET 171 170 170 MET MET B . n B 1 172 ILE 172 171 171 ILE ILE B . n B 1 173 VAL 173 172 172 VAL VAL B . n B 1 174 PHE 174 173 173 PHE PHE B . n B 1 175 ILE 175 174 174 ILE ILE B . n B 1 176 GLY 176 175 175 GLY GLY B . n B 1 177 ALA 177 176 176 ALA ALA B . n B 1 178 LEU 178 177 177 LEU LEU B . n B 1 179 PRO 179 178 178 PRO PRO B . n B 1 180 ASN 180 179 179 ASN ASN B . n B 1 181 VAL 181 180 180 VAL VAL B . n B 1 182 SER 182 181 181 SER SER B . n B 1 183 LYS 183 182 182 LYS LYS B . n B 1 184 PHE 184 183 183 PHE PHE B . n B 1 185 LYS 185 184 184 LYS LYS B . n B 1 186 PRO 186 185 185 PRO PRO B . n B 1 187 TYR 187 186 186 TYR TYR B . n B 1 188 LYS 188 187 187 LYS LYS B . n B 1 189 LYS 189 188 188 LYS LYS B . n B 1 190 GLY 190 189 189 GLY GLY B . n B 1 191 ASP 191 190 190 ASP ASP B . n B 1 192 PRO 192 191 191 PRO PRO B . n B 1 193 LYS 193 192 192 LYS LYS B . n B 1 194 ILE 194 193 193 ILE ILE B . n B 1 195 ALA 195 194 194 ALA ALA B . n B 1 196 GLU 196 195 195 GLU GLU B . n B 1 197 LEU 197 196 196 LEU LEU B . n B 1 198 LEU 198 197 197 LEU LEU B . n B 1 199 LYS 199 198 198 LYS LYS B . n B 1 200 GLU 200 199 199 GLU GLU B . n B 1 201 ALA 201 200 200 ALA ALA B . n B 1 202 LEU 202 201 201 LEU LEU B . n B 1 203 GLU 203 202 202 GLU GLU B . n B 1 204 ALA 204 203 203 ALA ALA B . n B 1 205 GLY 205 204 204 GLY GLY B . n B 1 206 VAL 206 205 205 VAL VAL B . n B 1 207 GLU 207 206 206 GLU GLU B . n B 1 208 ILE 208 207 207 ILE ILE B . n B 1 209 ARG 209 208 208 ARG ARG B . n B 1 210 ALA 210 209 209 ALA ALA B . n B 1 211 LEU 211 210 210 LEU LEU B . n B 1 212 GLY 212 211 211 GLY GLY B . n B 1 213 LEU 213 212 212 LEU LEU B . n B 1 214 HIS 214 213 213 HIS HIS B . n B 1 215 MET 215 214 214 MET MET B . n B 1 216 GLU 216 215 215 GLU GLU B . n B 1 217 LEU 217 216 216 LEU LEU B . n B 1 218 SER 218 217 217 SER SER B . n B 1 219 GLY 219 218 218 GLY GLY B . n B 1 220 GLU 220 219 219 GLU GLU B . n B 1 221 ILE 221 220 220 ILE ILE B . n B 1 222 ILE 222 221 221 ILE ILE B . n B 1 223 TYR 223 222 222 TYR TYR B . n B 1 224 ARG 224 223 223 ARG ARG B . n B 1 225 GLY 225 224 224 GLY GLY B . n B 1 226 GLU 226 225 225 GLU GLU B . n B 1 227 LEU 227 226 226 LEU LEU B . n B 1 228 GLY 228 227 227 GLY GLY B . n B 1 229 VAL 229 228 228 VAL VAL B . n B 1 230 GLU 230 229 229 GLU GLU B . n B 1 231 ILE 231 230 230 ILE ILE B . n C 2 1 DC 1 1 1 DC DC X . n C 2 2 DG 2 2 2 DG DG X . n C 2 3 DC 3 3 3 DC DC X . n C 2 4 DT 4 4 4 DT DT X . n C 2 5 DG 5 5 5 DG DG X . n C 2 6 DT 6 6 6 DT DT X . n C 2 7 DC 7 7 7 DC DC X . n C 2 8 DT 8 8 8 DT DT X . n C 2 9 DC 9 9 9 DC DC X . n C 2 10 DG 10 10 10 DG DG X . n C 2 11 DC 11 11 11 DC DC X . n C 2 12 DT 12 12 12 DT DT X . n D 2 1 DC 1 1 1 DC DC D . n D 2 2 DG 2 2 2 DG DG D . n D 2 3 DC 3 3 3 DC DC D . n D 2 4 DT 4 4 4 DT DT D . n D 2 5 DG 5 5 5 DG DG D . n D 2 6 DT 6 6 6 DT DT D . n D 2 7 DC 7 7 7 DC DC D . n D 2 8 DT 8 8 8 DT DT D . n D 2 9 DC 9 9 9 DC DC D . n D 2 10 DG 10 10 10 DG DG D . n D 2 11 DC 11 11 11 DC DC D . n D 2 12 DT 12 12 12 DT DT D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HOH 1 301 1 HOH HOH A . E 3 HOH 2 302 8 HOH HOH A . E 3 HOH 3 303 10 HOH HOH A . E 3 HOH 4 304 11 HOH HOH A . E 3 HOH 5 305 12 HOH HOH A . E 3 HOH 6 306 13 HOH HOH A . E 3 HOH 7 307 14 HOH HOH A . E 3 HOH 8 308 15 HOH HOH A . E 3 HOH 9 309 17 HOH HOH A . E 3 HOH 10 310 18 HOH HOH A . E 3 HOH 11 311 19 HOH HOH A . E 3 HOH 12 312 23 HOH HOH A . E 3 HOH 13 313 25 HOH HOH A . E 3 HOH 14 314 27 HOH HOH A . E 3 HOH 15 315 28 HOH HOH A . E 3 HOH 16 316 29 HOH HOH A . E 3 HOH 17 317 30 HOH HOH A . E 3 HOH 18 318 31 HOH HOH A . E 3 HOH 19 319 33 HOH HOH A . E 3 HOH 20 320 34 HOH HOH A . E 3 HOH 21 321 35 HOH HOH A . E 3 HOH 22 322 36 HOH HOH A . E 3 HOH 23 323 37 HOH HOH A . E 3 HOH 24 324 38 HOH HOH A . E 3 HOH 25 325 39 HOH HOH A . E 3 HOH 26 326 40 HOH HOH A . E 3 HOH 27 327 46 HOH HOH A . E 3 HOH 28 328 49 HOH HOH A . E 3 HOH 29 329 51 HOH HOH A . E 3 HOH 30 330 61 HOH HOH A . E 3 HOH 31 331 62 HOH HOH A . E 3 HOH 32 332 67 HOH HOH A . E 3 HOH 33 333 68 HOH HOH A . E 3 HOH 34 334 69 HOH HOH A . E 3 HOH 35 335 71 HOH HOH A . E 3 HOH 36 336 74 HOH HOH A . E 3 HOH 37 337 80 HOH HOH A . E 3 HOH 38 338 81 HOH HOH A . E 3 HOH 39 339 83 HOH HOH A . E 3 HOH 40 340 84 HOH HOH A . E 3 HOH 41 341 94 HOH HOH A . E 3 HOH 42 342 95 HOH HOH A . E 3 HOH 43 343 96 HOH HOH A . E 3 HOH 44 344 104 HOH HOH A . E 3 HOH 45 345 105 HOH HOH A . E 3 HOH 46 346 106 HOH HOH A . E 3 HOH 47 347 107 HOH HOH A . E 3 HOH 48 348 108 HOH HOH A . E 3 HOH 49 349 110 HOH HOH A . E 3 HOH 50 350 111 HOH HOH A . E 3 HOH 51 351 112 HOH HOH A . E 3 HOH 52 352 113 HOH HOH A . E 3 HOH 53 353 114 HOH HOH A . E 3 HOH 54 354 115 HOH HOH A . E 3 HOH 55 355 128 HOH HOH A . E 3 HOH 56 356 135 HOH HOH A . E 3 HOH 57 357 136 HOH HOH A . E 3 HOH 58 358 143 HOH HOH A . E 3 HOH 59 359 146 HOH HOH A . E 3 HOH 60 360 149 HOH HOH A . E 3 HOH 61 361 150 HOH HOH A . E 3 HOH 62 362 151 HOH HOH A . E 3 HOH 63 363 154 HOH HOH A . E 3 HOH 64 364 155 HOH HOH A . E 3 HOH 65 365 157 HOH HOH A . E 3 HOH 66 366 160 HOH HOH A . E 3 HOH 67 367 163 HOH HOH A . E 3 HOH 68 368 165 HOH HOH A . E 3 HOH 69 369 173 HOH HOH A . E 3 HOH 70 370 176 HOH HOH A . E 3 HOH 71 371 177 HOH HOH A . E 3 HOH 72 372 183 HOH HOH A . E 3 HOH 73 373 103 HOH HOH A . F 3 HOH 1 301 2 HOH HOH B . F 3 HOH 2 302 3 HOH HOH B . F 3 HOH 3 303 4 HOH HOH B . F 3 HOH 4 304 5 HOH HOH B . F 3 HOH 5 305 6 HOH HOH B . F 3 HOH 6 306 7 HOH HOH B . F 3 HOH 7 307 20 HOH HOH B . F 3 HOH 8 308 21 HOH HOH B . F 3 HOH 9 309 22 HOH HOH B . F 3 HOH 10 310 24 HOH HOH B . F 3 HOH 11 311 26 HOH HOH B . F 3 HOH 12 312 32 HOH HOH B . F 3 HOH 13 313 41 HOH HOH B . F 3 HOH 14 314 42 HOH HOH B . F 3 HOH 15 315 48 HOH HOH B . F 3 HOH 16 316 50 HOH HOH B . F 3 HOH 17 317 52 HOH HOH B . F 3 HOH 18 318 53 HOH HOH B . F 3 HOH 19 319 54 HOH HOH B . F 3 HOH 20 320 55 HOH HOH B . F 3 HOH 21 321 58 HOH HOH B . F 3 HOH 22 322 59 HOH HOH B . F 3 HOH 23 323 60 HOH HOH B . F 3 HOH 24 324 63 HOH HOH B . F 3 HOH 25 325 64 HOH HOH B . F 3 HOH 26 326 65 HOH HOH B . F 3 HOH 27 327 66 HOH HOH B . F 3 HOH 28 328 72 HOH HOH B . F 3 HOH 29 329 73 HOH HOH B . F 3 HOH 30 330 75 HOH HOH B . F 3 HOH 31 331 77 HOH HOH B . F 3 HOH 32 332 78 HOH HOH B . F 3 HOH 33 333 79 HOH HOH B . F 3 HOH 34 334 86 HOH HOH B . F 3 HOH 35 335 87 HOH HOH B . F 3 HOH 36 336 88 HOH HOH B . F 3 HOH 37 337 89 HOH HOH B . F 3 HOH 38 338 91 HOH HOH B . F 3 HOH 39 339 92 HOH HOH B . F 3 HOH 40 340 93 HOH HOH B . F 3 HOH 41 341 99 HOH HOH B . F 3 HOH 42 342 101 HOH HOH B . F 3 HOH 43 343 102 HOH HOH B . F 3 HOH 44 344 109 HOH HOH B . F 3 HOH 45 345 116 HOH HOH B . F 3 HOH 46 346 117 HOH HOH B . F 3 HOH 47 347 118 HOH HOH B . F 3 HOH 48 348 119 HOH HOH B . F 3 HOH 49 349 120 HOH HOH B . F 3 HOH 50 350 121 HOH HOH B . F 3 HOH 51 351 126 HOH HOH B . F 3 HOH 52 352 129 HOH HOH B . F 3 HOH 53 353 130 HOH HOH B . F 3 HOH 54 354 131 HOH HOH B . F 3 HOH 55 355 132 HOH HOH B . F 3 HOH 56 356 133 HOH HOH B . F 3 HOH 57 357 134 HOH HOH B . F 3 HOH 58 358 137 HOH HOH B . F 3 HOH 59 359 139 HOH HOH B . F 3 HOH 60 360 140 HOH HOH B . F 3 HOH 61 361 141 HOH HOH B . F 3 HOH 62 362 142 HOH HOH B . F 3 HOH 63 363 144 HOH HOH B . F 3 HOH 64 364 145 HOH HOH B . F 3 HOH 65 365 147 HOH HOH B . F 3 HOH 66 366 148 HOH HOH B . F 3 HOH 67 367 156 HOH HOH B . F 3 HOH 68 368 158 HOH HOH B . F 3 HOH 69 369 159 HOH HOH B . F 3 HOH 70 370 161 HOH HOH B . F 3 HOH 71 371 162 HOH HOH B . F 3 HOH 72 372 164 HOH HOH B . F 3 HOH 73 373 166 HOH HOH B . F 3 HOH 74 374 167 HOH HOH B . F 3 HOH 75 375 168 HOH HOH B . F 3 HOH 76 376 169 HOH HOH B . F 3 HOH 77 377 170 HOH HOH B . F 3 HOH 78 378 171 HOH HOH B . F 3 HOH 79 379 174 HOH HOH B . F 3 HOH 80 380 175 HOH HOH B . F 3 HOH 81 381 179 HOH HOH B . F 3 HOH 82 382 184 HOH HOH B . F 3 HOH 83 383 185 HOH HOH B . F 3 HOH 84 384 186 HOH HOH B . F 3 HOH 85 385 187 HOH HOH B . F 3 HOH 86 386 82 HOH HOH B . G 3 HOH 1 101 16 HOH HOH X . G 3 HOH 2 102 44 HOH HOH X . G 3 HOH 3 103 56 HOH HOH X . G 3 HOH 4 104 97 HOH HOH X . G 3 HOH 5 105 100 HOH HOH X . G 3 HOH 6 106 125 HOH HOH X . G 3 HOH 7 107 127 HOH HOH X . G 3 HOH 8 108 138 HOH HOH X . G 3 HOH 9 109 152 HOH HOH X . G 3 HOH 10 110 182 HOH HOH X . H 3 HOH 1 101 9 HOH HOH D . H 3 HOH 2 102 47 HOH HOH D . H 3 HOH 3 103 57 HOH HOH D . H 3 HOH 4 104 70 HOH HOH D . H 3 HOH 5 105 76 HOH HOH D . H 3 HOH 6 106 85 HOH HOH D . H 3 HOH 7 107 90 HOH HOH D . H 3 HOH 8 108 98 HOH HOH D . H 3 HOH 9 109 122 HOH HOH D . H 3 HOH 10 110 123 HOH HOH D . H 3 HOH 11 111 124 HOH HOH D . H 3 HOH 12 112 153 HOH HOH D . H 3 HOH 13 113 172 HOH HOH D . H 3 HOH 14 114 178 HOH HOH D . H 3 HOH 15 115 180 HOH HOH D . H 3 HOH 16 116 181 HOH HOH D . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? tetrameric 4 2 author_defined_assembly ? tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 D,H 1 2 A,C,D,E,G,H 2 3 C,G 2 2 B,C,D,F,G,H # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'crystal symmetry operation' 1_565 x,y+1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 42.6900000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 1_545 x,y-1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -42.6900000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-10-01 2 'Structure model' 1 1 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model 5 2 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal GDA 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.5.0102 ? 3 MOSFLM 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 X _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 102 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 X _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 108 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.12 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 358 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 313 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 1_565 _pdbx_validate_symm_contact.dist 2.13 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" X DT 6 ? ? "C1'" X DT 6 ? ? N1 X DT 6 ? ? 111.70 108.30 3.40 0.30 N 2 1 "O4'" X DT 8 ? ? "C1'" X DT 8 ? ? N1 X DT 8 ? ? 111.17 108.30 2.87 0.30 N 3 1 "O4'" X DC 9 ? ? "C1'" X DC 9 ? ? N1 X DC 9 ? ? 110.15 108.30 1.85 0.30 N 4 1 "O4'" D DT 6 ? ? "C1'" D DT 6 ? ? N1 D DT 6 ? ? 113.68 108.30 5.38 0.30 N 5 1 "O4'" D DC 7 ? ? "C1'" D DC 7 ? ? N1 D DC 7 ? ? 113.17 108.30 4.87 0.30 N 6 1 "O4'" D DT 8 ? ? "C1'" D DT 8 ? ? N1 D DT 8 ? ? 110.93 108.30 2.63 0.30 N 7 1 "O4'" D DC 11 ? ? "C1'" D DC 11 ? ? N1 D DC 11 ? ? 110.97 108.30 2.67 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A 4 ? ? 177.88 171.16 2 1 GLU A 29 ? ? 64.49 -14.81 3 1 ASN A 38 ? ? 177.96 105.45 4 1 LYS A 74 ? ? -115.19 -145.66 5 1 GLU A 100 ? ? -81.50 47.03 6 1 GLU A 108 ? ? 39.69 59.51 7 1 LYS A 124 ? ? -64.75 -72.41 8 1 ASP A 165 ? ? -88.25 38.81 9 1 LYS B 28 ? ? 38.02 70.45 10 1 GLU B 29 ? ? 74.44 -32.10 11 1 ASN B 38 ? ? 178.08 101.57 12 1 LYS B 74 ? ? -116.95 -159.99 13 1 GLU B 94 ? ? 62.79 60.98 14 1 LEU B 99 ? ? -150.11 52.02 15 1 ALA B 176 ? ? -78.53 47.56 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 X DC 1 ? "O5'" ? C DC 1 "O5'" 2 1 Y 1 D DC 1 ? "O5'" ? D DC 1 "O5'" # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DC OP3 O N N 88 DC P P N N 89 DC OP1 O N N 90 DC OP2 O N N 91 DC "O5'" O N N 92 DC "C5'" C N N 93 DC "C4'" C N R 94 DC "O4'" O N N 95 DC "C3'" C N S 96 DC "O3'" O N N 97 DC "C2'" C N N 98 DC "C1'" C N R 99 DC N1 N N N 100 DC C2 C N N 101 DC O2 O N N 102 DC N3 N N N 103 DC C4 C N N 104 DC N4 N N N 105 DC C5 C N N 106 DC C6 C N N 107 DC HOP3 H N N 108 DC HOP2 H N N 109 DC "H5'" H N N 110 DC "H5''" H N N 111 DC "H4'" H N N 112 DC "H3'" H N N 113 DC "HO3'" H N N 114 DC "H2'" H N N 115 DC "H2''" H N N 116 DC "H1'" H N N 117 DC H41 H N N 118 DC H42 H N N 119 DC H5 H N N 120 DC H6 H N N 121 DG OP3 O N N 122 DG P P N N 123 DG OP1 O N N 124 DG OP2 O N N 125 DG "O5'" O N N 126 DG "C5'" C N N 127 DG "C4'" C N R 128 DG "O4'" O N N 129 DG "C3'" C N S 130 DG "O3'" O N N 131 DG "C2'" C N N 132 DG "C1'" C N R 133 DG N9 N Y N 134 DG C8 C Y N 135 DG N7 N Y N 136 DG C5 C Y N 137 DG C6 C N N 138 DG O6 O N N 139 DG N1 N N N 140 DG C2 C N N 141 DG N2 N N N 142 DG N3 N N N 143 DG C4 C Y N 144 DG HOP3 H N N 145 DG HOP2 H N N 146 DG "H5'" H N N 147 DG "H5''" H N N 148 DG "H4'" H N N 149 DG "H3'" H N N 150 DG "HO3'" H N N 151 DG "H2'" H N N 152 DG "H2''" H N N 153 DG "H1'" H N N 154 DG H8 H N N 155 DG H1 H N N 156 DG H21 H N N 157 DG H22 H N N 158 DT OP3 O N N 159 DT P P N N 160 DT OP1 O N N 161 DT OP2 O N N 162 DT "O5'" O N N 163 DT "C5'" C N N 164 DT "C4'" C N R 165 DT "O4'" O N N 166 DT "C3'" C N S 167 DT "O3'" O N N 168 DT "C2'" C N N 169 DT "C1'" C N R 170 DT N1 N N N 171 DT C2 C N N 172 DT O2 O N N 173 DT N3 N N N 174 DT C4 C N N 175 DT O4 O N N 176 DT C5 C N N 177 DT C7 C N N 178 DT C6 C N N 179 DT HOP3 H N N 180 DT HOP2 H N N 181 DT "H5'" H N N 182 DT "H5''" H N N 183 DT "H4'" H N N 184 DT "H3'" H N N 185 DT "HO3'" H N N 186 DT "H2'" H N N 187 DT "H2''" H N N 188 DT "H1'" H N N 189 DT H3 H N N 190 DT H71 H N N 191 DT H72 H N N 192 DT H73 H N N 193 DT H6 H N N 194 GLN N N N N 195 GLN CA C N S 196 GLN C C N N 197 GLN O O N N 198 GLN CB C N N 199 GLN CG C N N 200 GLN CD C N N 201 GLN OE1 O N N 202 GLN NE2 N N N 203 GLN OXT O N N 204 GLN H H N N 205 GLN H2 H N N 206 GLN HA H N N 207 GLN HB2 H N N 208 GLN HB3 H N N 209 GLN HG2 H N N 210 GLN HG3 H N N 211 GLN HE21 H N N 212 GLN HE22 H N N 213 GLN HXT H N N 214 GLU N N N N 215 GLU CA C N S 216 GLU C C N N 217 GLU O O N N 218 GLU CB C N N 219 GLU CG C N N 220 GLU CD C N N 221 GLU OE1 O N N 222 GLU OE2 O N N 223 GLU OXT O N N 224 GLU H H N N 225 GLU H2 H N N 226 GLU HA H N N 227 GLU HB2 H N N 228 GLU HB3 H N N 229 GLU HG2 H N N 230 GLU HG3 H N N 231 GLU HE2 H N N 232 GLU HXT H N N 233 GLY N N N N 234 GLY CA C N N 235 GLY C C N N 236 GLY O O N N 237 GLY OXT O N N 238 GLY H H N N 239 GLY H2 H N N 240 GLY HA2 H N N 241 GLY HA3 H N N 242 GLY HXT H N N 243 HIS N N N N 244 HIS CA C N S 245 HIS C C N N 246 HIS O O N N 247 HIS CB C N N 248 HIS CG C Y N 249 HIS ND1 N Y N 250 HIS CD2 C Y N 251 HIS CE1 C Y N 252 HIS NE2 N Y N 253 HIS OXT O N N 254 HIS H H N N 255 HIS H2 H N N 256 HIS HA H N N 257 HIS HB2 H N N 258 HIS HB3 H N N 259 HIS HD1 H N N 260 HIS HD2 H N N 261 HIS HE1 H N N 262 HIS HE2 H N N 263 HIS HXT H N N 264 HOH O O N N 265 HOH H1 H N N 266 HOH H2 H N N 267 ILE N N N N 268 ILE CA C N S 269 ILE C C N N 270 ILE O O N N 271 ILE CB C N S 272 ILE CG1 C N N 273 ILE CG2 C N N 274 ILE CD1 C N N 275 ILE OXT O N N 276 ILE H H N N 277 ILE H2 H N N 278 ILE HA H N N 279 ILE HB H N N 280 ILE HG12 H N N 281 ILE HG13 H N N 282 ILE HG21 H N N 283 ILE HG22 H N N 284 ILE HG23 H N N 285 ILE HD11 H N N 286 ILE HD12 H N N 287 ILE HD13 H N N 288 ILE HXT H N N 289 LEU N N N N 290 LEU CA C N S 291 LEU C C N N 292 LEU O O N N 293 LEU CB C N N 294 LEU CG C N N 295 LEU CD1 C N N 296 LEU CD2 C N N 297 LEU OXT O N N 298 LEU H H N N 299 LEU H2 H N N 300 LEU HA H N N 301 LEU HB2 H N N 302 LEU HB3 H N N 303 LEU HG H N N 304 LEU HD11 H N N 305 LEU HD12 H N N 306 LEU HD13 H N N 307 LEU HD21 H N N 308 LEU HD22 H N N 309 LEU HD23 H N N 310 LEU HXT H N N 311 LYS N N N N 312 LYS CA C N S 313 LYS C C N N 314 LYS O O N N 315 LYS CB C N N 316 LYS CG C N N 317 LYS CD C N N 318 LYS CE C N N 319 LYS NZ N N N 320 LYS OXT O N N 321 LYS H H N N 322 LYS H2 H N N 323 LYS HA H N N 324 LYS HB2 H N N 325 LYS HB3 H N N 326 LYS HG2 H N N 327 LYS HG3 H N N 328 LYS HD2 H N N 329 LYS HD3 H N N 330 LYS HE2 H N N 331 LYS HE3 H N N 332 LYS HZ1 H N N 333 LYS HZ2 H N N 334 LYS HZ3 H N N 335 LYS HXT H N N 336 MET N N N N 337 MET CA C N S 338 MET C C N N 339 MET O O N N 340 MET CB C N N 341 MET CG C N N 342 MET SD S N N 343 MET CE C N N 344 MET OXT O N N 345 MET H H N N 346 MET H2 H N N 347 MET HA H N N 348 MET HB2 H N N 349 MET HB3 H N N 350 MET HG2 H N N 351 MET HG3 H N N 352 MET HE1 H N N 353 MET HE2 H N N 354 MET HE3 H N N 355 MET HXT H N N 356 PHE N N N N 357 PHE CA C N S 358 PHE C C N N 359 PHE O O N N 360 PHE CB C N N 361 PHE CG C Y N 362 PHE CD1 C Y N 363 PHE CD2 C Y N 364 PHE CE1 C Y N 365 PHE CE2 C Y N 366 PHE CZ C Y N 367 PHE OXT O N N 368 PHE H H N N 369 PHE H2 H N N 370 PHE HA H N N 371 PHE HB2 H N N 372 PHE HB3 H N N 373 PHE HD1 H N N 374 PHE HD2 H N N 375 PHE HE1 H N N 376 PHE HE2 H N N 377 PHE HZ H N N 378 PHE HXT H N N 379 PRO N N N N 380 PRO CA C N S 381 PRO C C N N 382 PRO O O N N 383 PRO CB C N N 384 PRO CG C N N 385 PRO CD C N N 386 PRO OXT O N N 387 PRO H H N N 388 PRO HA H N N 389 PRO HB2 H N N 390 PRO HB3 H N N 391 PRO HG2 H N N 392 PRO HG3 H N N 393 PRO HD2 H N N 394 PRO HD3 H N N 395 PRO HXT H N N 396 SER N N N N 397 SER CA C N S 398 SER C C N N 399 SER O O N N 400 SER CB C N N 401 SER OG O N N 402 SER OXT O N N 403 SER H H N N 404 SER H2 H N N 405 SER HA H N N 406 SER HB2 H N N 407 SER HB3 H N N 408 SER HG H N N 409 SER HXT H N N 410 THR N N N N 411 THR CA C N S 412 THR C C N N 413 THR O O N N 414 THR CB C N R 415 THR OG1 O N N 416 THR CG2 C N N 417 THR OXT O N N 418 THR H H N N 419 THR H2 H N N 420 THR HA H N N 421 THR HB H N N 422 THR HG1 H N N 423 THR HG21 H N N 424 THR HG22 H N N 425 THR HG23 H N N 426 THR HXT H N N 427 TYR N N N N 428 TYR CA C N S 429 TYR C C N N 430 TYR O O N N 431 TYR CB C N N 432 TYR CG C Y N 433 TYR CD1 C Y N 434 TYR CD2 C Y N 435 TYR CE1 C Y N 436 TYR CE2 C Y N 437 TYR CZ C Y N 438 TYR OH O N N 439 TYR OXT O N N 440 TYR H H N N 441 TYR H2 H N N 442 TYR HA H N N 443 TYR HB2 H N N 444 TYR HB3 H N N 445 TYR HD1 H N N 446 TYR HD2 H N N 447 TYR HE1 H N N 448 TYR HE2 H N N 449 TYR HH H N N 450 TYR HXT H N N 451 VAL N N N N 452 VAL CA C N S 453 VAL C C N N 454 VAL O O N N 455 VAL CB C N N 456 VAL CG1 C N N 457 VAL CG2 C N N 458 VAL OXT O N N 459 VAL H H N N 460 VAL H2 H N N 461 VAL HA H N N 462 VAL HB H N N 463 VAL HG11 H N N 464 VAL HG12 H N N 465 VAL HG13 H N N 466 VAL HG21 H N N 467 VAL HG22 H N N 468 VAL HG23 H N N 469 VAL HXT H N N 470 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DC OP3 P sing N N 83 DC OP3 HOP3 sing N N 84 DC P OP1 doub N N 85 DC P OP2 sing N N 86 DC P "O5'" sing N N 87 DC OP2 HOP2 sing N N 88 DC "O5'" "C5'" sing N N 89 DC "C5'" "C4'" sing N N 90 DC "C5'" "H5'" sing N N 91 DC "C5'" "H5''" sing N N 92 DC "C4'" "O4'" sing N N 93 DC "C4'" "C3'" sing N N 94 DC "C4'" "H4'" sing N N 95 DC "O4'" "C1'" sing N N 96 DC "C3'" "O3'" sing N N 97 DC "C3'" "C2'" sing N N 98 DC "C3'" "H3'" sing N N 99 DC "O3'" "HO3'" sing N N 100 DC "C2'" "C1'" sing N N 101 DC "C2'" "H2'" sing N N 102 DC "C2'" "H2''" sing N N 103 DC "C1'" N1 sing N N 104 DC "C1'" "H1'" sing N N 105 DC N1 C2 sing N N 106 DC N1 C6 sing N N 107 DC C2 O2 doub N N 108 DC C2 N3 sing N N 109 DC N3 C4 doub N N 110 DC C4 N4 sing N N 111 DC C4 C5 sing N N 112 DC N4 H41 sing N N 113 DC N4 H42 sing N N 114 DC C5 C6 doub N N 115 DC C5 H5 sing N N 116 DC C6 H6 sing N N 117 DG OP3 P sing N N 118 DG OP3 HOP3 sing N N 119 DG P OP1 doub N N 120 DG P OP2 sing N N 121 DG P "O5'" sing N N 122 DG OP2 HOP2 sing N N 123 DG "O5'" "C5'" sing N N 124 DG "C5'" "C4'" sing N N 125 DG "C5'" "H5'" sing N N 126 DG "C5'" "H5''" sing N N 127 DG "C4'" "O4'" sing N N 128 DG "C4'" "C3'" sing N N 129 DG "C4'" "H4'" sing N N 130 DG "O4'" "C1'" sing N N 131 DG "C3'" "O3'" sing N N 132 DG "C3'" "C2'" sing N N 133 DG "C3'" "H3'" sing N N 134 DG "O3'" "HO3'" sing N N 135 DG "C2'" "C1'" sing N N 136 DG "C2'" "H2'" sing N N 137 DG "C2'" "H2''" sing N N 138 DG "C1'" N9 sing N N 139 DG "C1'" "H1'" sing N N 140 DG N9 C8 sing Y N 141 DG N9 C4 sing Y N 142 DG C8 N7 doub Y N 143 DG C8 H8 sing N N 144 DG N7 C5 sing Y N 145 DG C5 C6 sing N N 146 DG C5 C4 doub Y N 147 DG C6 O6 doub N N 148 DG C6 N1 sing N N 149 DG N1 C2 sing N N 150 DG N1 H1 sing N N 151 DG C2 N2 sing N N 152 DG C2 N3 doub N N 153 DG N2 H21 sing N N 154 DG N2 H22 sing N N 155 DG N3 C4 sing N N 156 DT OP3 P sing N N 157 DT OP3 HOP3 sing N N 158 DT P OP1 doub N N 159 DT P OP2 sing N N 160 DT P "O5'" sing N N 161 DT OP2 HOP2 sing N N 162 DT "O5'" "C5'" sing N N 163 DT "C5'" "C4'" sing N N 164 DT "C5'" "H5'" sing N N 165 DT "C5'" "H5''" sing N N 166 DT "C4'" "O4'" sing N N 167 DT "C4'" "C3'" sing N N 168 DT "C4'" "H4'" sing N N 169 DT "O4'" "C1'" sing N N 170 DT "C3'" "O3'" sing N N 171 DT "C3'" "C2'" sing N N 172 DT "C3'" "H3'" sing N N 173 DT "O3'" "HO3'" sing N N 174 DT "C2'" "C1'" sing N N 175 DT "C2'" "H2'" sing N N 176 DT "C2'" "H2''" sing N N 177 DT "C1'" N1 sing N N 178 DT "C1'" "H1'" sing N N 179 DT N1 C2 sing N N 180 DT N1 C6 sing N N 181 DT C2 O2 doub N N 182 DT C2 N3 sing N N 183 DT N3 C4 sing N N 184 DT N3 H3 sing N N 185 DT C4 O4 doub N N 186 DT C4 C5 sing N N 187 DT C5 C7 sing N N 188 DT C5 C6 doub N N 189 DT C7 H71 sing N N 190 DT C7 H72 sing N N 191 DT C7 H73 sing N N 192 DT C6 H6 sing N N 193 GLN N CA sing N N 194 GLN N H sing N N 195 GLN N H2 sing N N 196 GLN CA C sing N N 197 GLN CA CB sing N N 198 GLN CA HA sing N N 199 GLN C O doub N N 200 GLN C OXT sing N N 201 GLN CB CG sing N N 202 GLN CB HB2 sing N N 203 GLN CB HB3 sing N N 204 GLN CG CD sing N N 205 GLN CG HG2 sing N N 206 GLN CG HG3 sing N N 207 GLN CD OE1 doub N N 208 GLN CD NE2 sing N N 209 GLN NE2 HE21 sing N N 210 GLN NE2 HE22 sing N N 211 GLN OXT HXT sing N N 212 GLU N CA sing N N 213 GLU N H sing N N 214 GLU N H2 sing N N 215 GLU CA C sing N N 216 GLU CA CB sing N N 217 GLU CA HA sing N N 218 GLU C O doub N N 219 GLU C OXT sing N N 220 GLU CB CG sing N N 221 GLU CB HB2 sing N N 222 GLU CB HB3 sing N N 223 GLU CG CD sing N N 224 GLU CG HG2 sing N N 225 GLU CG HG3 sing N N 226 GLU CD OE1 doub N N 227 GLU CD OE2 sing N N 228 GLU OE2 HE2 sing N N 229 GLU OXT HXT sing N N 230 GLY N CA sing N N 231 GLY N H sing N N 232 GLY N H2 sing N N 233 GLY CA C sing N N 234 GLY CA HA2 sing N N 235 GLY CA HA3 sing N N 236 GLY C O doub N N 237 GLY C OXT sing N N 238 GLY OXT HXT sing N N 239 HIS N CA sing N N 240 HIS N H sing N N 241 HIS N H2 sing N N 242 HIS CA C sing N N 243 HIS CA CB sing N N 244 HIS CA HA sing N N 245 HIS C O doub N N 246 HIS C OXT sing N N 247 HIS CB CG sing N N 248 HIS CB HB2 sing N N 249 HIS CB HB3 sing N N 250 HIS CG ND1 sing Y N 251 HIS CG CD2 doub Y N 252 HIS ND1 CE1 doub Y N 253 HIS ND1 HD1 sing N N 254 HIS CD2 NE2 sing Y N 255 HIS CD2 HD2 sing N N 256 HIS CE1 NE2 sing Y N 257 HIS CE1 HE1 sing N N 258 HIS NE2 HE2 sing N N 259 HIS OXT HXT sing N N 260 HOH O H1 sing N N 261 HOH O H2 sing N N 262 ILE N CA sing N N 263 ILE N H sing N N 264 ILE N H2 sing N N 265 ILE CA C sing N N 266 ILE CA CB sing N N 267 ILE CA HA sing N N 268 ILE C O doub N N 269 ILE C OXT sing N N 270 ILE CB CG1 sing N N 271 ILE CB CG2 sing N N 272 ILE CB HB sing N N 273 ILE CG1 CD1 sing N N 274 ILE CG1 HG12 sing N N 275 ILE CG1 HG13 sing N N 276 ILE CG2 HG21 sing N N 277 ILE CG2 HG22 sing N N 278 ILE CG2 HG23 sing N N 279 ILE CD1 HD11 sing N N 280 ILE CD1 HD12 sing N N 281 ILE CD1 HD13 sing N N 282 ILE OXT HXT sing N N 283 LEU N CA sing N N 284 LEU N H sing N N 285 LEU N H2 sing N N 286 LEU CA C sing N N 287 LEU CA CB sing N N 288 LEU CA HA sing N N 289 LEU C O doub N N 290 LEU C OXT sing N N 291 LEU CB CG sing N N 292 LEU CB HB2 sing N N 293 LEU CB HB3 sing N N 294 LEU CG CD1 sing N N 295 LEU CG CD2 sing N N 296 LEU CG HG sing N N 297 LEU CD1 HD11 sing N N 298 LEU CD1 HD12 sing N N 299 LEU CD1 HD13 sing N N 300 LEU CD2 HD21 sing N N 301 LEU CD2 HD22 sing N N 302 LEU CD2 HD23 sing N N 303 LEU OXT HXT sing N N 304 LYS N CA sing N N 305 LYS N H sing N N 306 LYS N H2 sing N N 307 LYS CA C sing N N 308 LYS CA CB sing N N 309 LYS CA HA sing N N 310 LYS C O doub N N 311 LYS C OXT sing N N 312 LYS CB CG sing N N 313 LYS CB HB2 sing N N 314 LYS CB HB3 sing N N 315 LYS CG CD sing N N 316 LYS CG HG2 sing N N 317 LYS CG HG3 sing N N 318 LYS CD CE sing N N 319 LYS CD HD2 sing N N 320 LYS CD HD3 sing N N 321 LYS CE NZ sing N N 322 LYS CE HE2 sing N N 323 LYS CE HE3 sing N N 324 LYS NZ HZ1 sing N N 325 LYS NZ HZ2 sing N N 326 LYS NZ HZ3 sing N N 327 LYS OXT HXT sing N N 328 MET N CA sing N N 329 MET N H sing N N 330 MET N H2 sing N N 331 MET CA C sing N N 332 MET CA CB sing N N 333 MET CA HA sing N N 334 MET C O doub N N 335 MET C OXT sing N N 336 MET CB CG sing N N 337 MET CB HB2 sing N N 338 MET CB HB3 sing N N 339 MET CG SD sing N N 340 MET CG HG2 sing N N 341 MET CG HG3 sing N N 342 MET SD CE sing N N 343 MET CE HE1 sing N N 344 MET CE HE2 sing N N 345 MET CE HE3 sing N N 346 MET OXT HXT sing N N 347 PHE N CA sing N N 348 PHE N H sing N N 349 PHE N H2 sing N N 350 PHE CA C sing N N 351 PHE CA CB sing N N 352 PHE CA HA sing N N 353 PHE C O doub N N 354 PHE C OXT sing N N 355 PHE CB CG sing N N 356 PHE CB HB2 sing N N 357 PHE CB HB3 sing N N 358 PHE CG CD1 doub Y N 359 PHE CG CD2 sing Y N 360 PHE CD1 CE1 sing Y N 361 PHE CD1 HD1 sing N N 362 PHE CD2 CE2 doub Y N 363 PHE CD2 HD2 sing N N 364 PHE CE1 CZ doub Y N 365 PHE CE1 HE1 sing N N 366 PHE CE2 CZ sing Y N 367 PHE CE2 HE2 sing N N 368 PHE CZ HZ sing N N 369 PHE OXT HXT sing N N 370 PRO N CA sing N N 371 PRO N CD sing N N 372 PRO N H sing N N 373 PRO CA C sing N N 374 PRO CA CB sing N N 375 PRO CA HA sing N N 376 PRO C O doub N N 377 PRO C OXT sing N N 378 PRO CB CG sing N N 379 PRO CB HB2 sing N N 380 PRO CB HB3 sing N N 381 PRO CG CD sing N N 382 PRO CG HG2 sing N N 383 PRO CG HG3 sing N N 384 PRO CD HD2 sing N N 385 PRO CD HD3 sing N N 386 PRO OXT HXT sing N N 387 SER N CA sing N N 388 SER N H sing N N 389 SER N H2 sing N N 390 SER CA C sing N N 391 SER CA CB sing N N 392 SER CA HA sing N N 393 SER C O doub N N 394 SER C OXT sing N N 395 SER CB OG sing N N 396 SER CB HB2 sing N N 397 SER CB HB3 sing N N 398 SER OG HG sing N N 399 SER OXT HXT sing N N 400 THR N CA sing N N 401 THR N H sing N N 402 THR N H2 sing N N 403 THR CA C sing N N 404 THR CA CB sing N N 405 THR CA HA sing N N 406 THR C O doub N N 407 THR C OXT sing N N 408 THR CB OG1 sing N N 409 THR CB CG2 sing N N 410 THR CB HB sing N N 411 THR OG1 HG1 sing N N 412 THR CG2 HG21 sing N N 413 THR CG2 HG22 sing N N 414 THR CG2 HG23 sing N N 415 THR OXT HXT sing N N 416 TYR N CA sing N N 417 TYR N H sing N N 418 TYR N H2 sing N N 419 TYR CA C sing N N 420 TYR CA CB sing N N 421 TYR CA HA sing N N 422 TYR C O doub N N 423 TYR C OXT sing N N 424 TYR CB CG sing N N 425 TYR CB HB2 sing N N 426 TYR CB HB3 sing N N 427 TYR CG CD1 doub Y N 428 TYR CG CD2 sing Y N 429 TYR CD1 CE1 sing Y N 430 TYR CD1 HD1 sing N N 431 TYR CD2 CE2 doub Y N 432 TYR CD2 HD2 sing N N 433 TYR CE1 CZ doub Y N 434 TYR CE1 HE1 sing N N 435 TYR CE2 CZ sing Y N 436 TYR CE2 HE2 sing N N 437 TYR CZ OH sing N N 438 TYR OH HH sing N N 439 TYR OXT HXT sing N N 440 VAL N CA sing N N 441 VAL N H sing N N 442 VAL N H2 sing N N 443 VAL CA C sing N N 444 VAL CA CB sing N N 445 VAL CA HA sing N N 446 VAL C O doub N N 447 VAL C OXT sing N N 448 VAL CB CG1 sing N N 449 VAL CB CG2 sing N N 450 VAL CB HB sing N N 451 VAL CG1 HG11 sing N N 452 VAL CG1 HG12 sing N N 453 VAL CG1 HG13 sing N N 454 VAL CG2 HG21 sing N N 455 VAL CG2 HG22 sing N N 456 VAL CG2 HG23 sing N N 457 VAL OXT HXT sing N N 458 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4DAV 'double helix' 4DAV 'b-form double helix' 4DAV 'mismatched base pair' 4DAV 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C DT 4 1_555 D DT 12 1_555 -2.513 -1.751 -0.060 -31.138 -19.419 17.626 1 X_DT4:DT12_D X 4 ? D 12 ? 16 1 1 C DG 5 1_555 D DC 11 1_555 -0.127 -0.174 -0.062 -12.478 -1.519 -1.432 2 X_DG5:DC11_D X 5 ? D 11 ? 19 1 1 C DT 6 1_555 D DG 10 1_555 2.403 -0.412 -0.217 3.206 3.252 -3.840 3 X_DT6:DG10_D X 6 ? D 10 ? 28 1 1 C DC 7 1_555 D DC 9 1_555 2.038 -1.275 0.488 12.789 -21.383 35.785 4 X_DC7:DC9_D X 7 ? D 9 ? ? ? 1 C DG 10 1_555 D DT 6 1_555 -2.381 -0.617 -0.420 -2.225 2.483 -3.786 5 X_DG10:DT6_D X 10 ? D 6 ? 28 1 1 C DC 11 1_555 D DG 5 1_555 -0.035 -0.084 -0.026 13.090 -1.821 -1.025 6 X_DC11:DG5_D X 11 ? D 5 ? 19 1 1 C DT 12 1_555 D DT 4 1_555 2.682 -1.999 -0.175 26.290 -21.104 14.392 7 X_DT12:DT4_D X 12 ? D 4 ? 16 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C DT 4 1_555 D DT 12 1_555 C DG 5 1_555 D DC 11 1_555 -0.366 0.262 2.855 -3.746 7.725 39.767 -0.382 0.159 2.876 11.199 5.430 40.647 1 XX_DT4DG5:DC11DT12_DD X 4 ? D 12 ? X 5 ? D 11 ? 1 C DG 5 1_555 D DC 11 1_555 C DT 6 1_555 D DG 10 1_555 0.196 -0.463 2.979 1.886 5.204 33.006 -1.579 -0.060 2.881 9.080 -3.290 33.454 2 XX_DG5DT6:DG10DC11_DD X 5 ? D 11 ? X 6 ? D 10 ? 1 C DT 6 1_555 D DG 10 1_555 C DC 7 1_555 D DC 9 1_555 2.166 -0.476 3.211 -3.893 2.502 29.269 -1.424 -5.003 2.856 4.912 7.643 29.625 3 XX_DT6DC7:DC9DG10_DD X 6 ? D 10 ? X 7 ? D 9 ? 1 C DG 10 1_555 D DT 6 1_555 C DC 11 1_555 D DG 5 1_555 -0.239 -0.499 2.932 -3.756 8.094 30.206 -2.255 -0.179 2.720 15.123 7.017 31.467 4 XX_DG10DC11:DG5DT6_DD X 10 ? D 6 ? X 11 ? D 5 ? 1 C DC 11 1_555 D DG 5 1_555 C DT 12 1_555 D DT 4 1_555 0.244 0.321 3.081 3.908 5.966 42.051 -0.131 0.040 3.106 8.243 -5.399 42.625 5 XX_DC11DT12:DT4DG5_DD X 11 ? D 5 ? X 12 ? D 4 ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4DA2 _pdbx_initial_refinement_model.details ? #