HEADER RNA BINDING PROTEIN/RNA 13-JAN-12 4DB2 TITLE MSS116P DEAD-BOX HELICASE DOMAIN 2 BOUND TO AN RNA DUPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-DEPENDENT RNA HELICASE MSS116, MITOCHONDRIAL; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: DOMAIN 2 (UNP RESIDUES 342-596); COMPND 5 SYNONYM: MSS116P; COMPND 6 EC: 3.6.4.13; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 5'-R(*GP*GP*GP*CP*GP*GP*GP*CP*CP*CP*GP*CP*CP*C)-3'; COMPND 10 CHAIN: E, F, G, H, I, J; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 ORGANELLE: MITOCHONDRION; SOURCE 6 GENE: MSS116, YDR194C, YD9346.05C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 ROSETTA 2; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMAL-C2T; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES KEYWDS DEAD-BOX, RNA HELICASE, HYDROLASE, RNA BINDING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.L.MALLAM,M.DEL CAMPO,B.D.GILMAN,D.J.SIDOTE,A.LAMBOWITZ REVDAT 4 13-SEP-23 4DB2 1 DBREF SEQADV REVDAT 3 10-OCT-12 4DB2 1 JRNL REVDAT 2 19-SEP-12 4DB2 1 JRNL REVDAT 1 29-AUG-12 4DB2 0 JRNL AUTH A.L.MALLAM,M.DEL CAMPO,B.GILMAN,D.J.SIDOTE,A.M.LAMBOWITZ JRNL TITL STRUCTURAL BASIS FOR RNA-DUPLEX RECOGNITION AND UNWINDING BY JRNL TITL 2 THE DEAD-BOX HELICASE MSS116P. JRNL REF NATURE V. 490 121 2012 JRNL REFN ISSN 0028-0836 JRNL PMID 22940866 JRNL DOI 10.1038/NATURE11402 REMARK 2 REMARK 2 RESOLUTION. 3.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 30107 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1518 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.6280 - 7.0113 0.99 2774 150 0.1995 0.1919 REMARK 3 2 7.0113 - 5.5690 1.00 2656 146 0.2234 0.2668 REMARK 3 3 5.5690 - 4.8662 1.00 2620 144 0.2103 0.3027 REMARK 3 4 4.8662 - 4.4218 1.00 2620 133 0.1819 0.2721 REMARK 3 5 4.4218 - 4.1051 1.00 2606 142 0.1992 0.2630 REMARK 3 6 4.1051 - 3.8633 0.99 2588 134 0.2308 0.2842 REMARK 3 7 3.8633 - 3.6699 1.00 2565 138 0.2550 0.3060 REMARK 3 8 3.6699 - 3.5102 1.00 2601 129 0.2563 0.2904 REMARK 3 9 3.5102 - 3.3751 1.00 2570 126 0.2684 0.3360 REMARK 3 10 3.3751 - 3.2587 1.00 2568 157 0.2927 0.3233 REMARK 3 11 3.2587 - 3.1570 0.94 2421 119 0.3080 0.3272 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.11 REMARK 3 K_SOL : 0.30 REMARK 3 B_SOL : 25.85 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.990 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -10.65970 REMARK 3 B22 (A**2) : -14.26540 REMARK 3 B33 (A**2) : 24.92510 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 9812 REMARK 3 ANGLE : 0.634 13692 REMARK 3 CHIRALITY : 0.042 1669 REMARK 3 PLANARITY : 0.002 1448 REMARK 3 DIHEDRAL : 12.428 3852 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4DB2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000070106. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-11 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VARIMAX HIGHFLUX REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30146 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.150 REMARK 200 RESOLUTION RANGE LOW (A) : 121.238 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.46700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.3.0 REMARK 200 STARTING MODEL: PSB ENTRY 3I5X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% TACSIMATE, PH 6.0, 20% PEG3350, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 80.26700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.21100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 80.26700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.21100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 597 REMARK 465 TYR B 597 REMARK 465 SER C 341 REMARK 465 SER D 341 REMARK 465 GLY D 436 REMARK 465 ALA D 437 REMARK 465 ARG D 438 REMARK 465 GLY D 439 REMARK 465 MET D 440 REMARK 465 ASP D 441 REMARK 465 PHE D 442 REMARK 465 PRO D 443 REMARK 465 ASN D 444 REMARK 465 ARG D 466 REMARK 465 THR D 467 REMARK 465 ALA D 468 REMARK 465 ARG D 469 REMARK 465 SER D 470 REMARK 465 GLY D 471 REMARK 465 LYS D 472 REMARK 465 GLU D 473 REMARK 465 GLY D 474 REMARK 465 SER D 475 REMARK 465 C G 14 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 341 OG REMARK 470 LYS A 399 CG CD CE NZ REMARK 470 LYS A 414 CG CD CE NZ REMARK 470 LYS A 420 CG CD CE NZ REMARK 470 ARG A 438 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 441 CG OD1 OD2 REMARK 470 GLU A 456 CG CD OE1 OE2 REMARK 470 ARG A 466 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 469 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 472 CG CD CE NZ REMARK 470 GLU A 473 CD OE1 OE2 REMARK 470 LYS A 482 CD CE NZ REMARK 470 ARG A 489 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 495 CG CD CE NZ REMARK 470 LYS A 542 CG CD CE NZ REMARK 470 ARG A 549 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 574 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 575 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 579 CG CD CE NZ REMARK 470 ARG A 584 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 589 CG CD CE NZ REMARK 470 GLU A 593 CG CD OE1 OE2 REMARK 470 ARG A 595 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 596 CG OD1 OD2 REMARK 470 SER B 341 OG REMARK 470 LYS B 351 CG CD CE NZ REMARK 470 LYS B 384 CG CD CE NZ REMARK 470 LYS B 398 CG CD CE NZ REMARK 470 LYS B 399 CG CD CE NZ REMARK 470 LYS B 414 CG CD CE NZ REMARK 470 LYS B 424 CG CD CE NZ REMARK 470 ARG B 438 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 473 CD OE1 OE2 REMARK 470 LYS B 482 CG CD CE NZ REMARK 470 ARG B 489 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 522 CG CD OE1 OE2 REMARK 470 GLU B 524 CG CD OE1 OE2 REMARK 470 LYS B 542 CG CD CE NZ REMARK 470 ARG B 545 CZ NH1 NH2 REMARK 470 GLU B 548 CG CD OE1 OE2 REMARK 470 ARG B 574 CZ NH1 NH2 REMARK 470 ARG B 575 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 584 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 593 CG CD OE1 OE2 REMARK 470 ASP B 596 CG OD1 OD2 REMARK 470 LYS C 364 CG CD CE NZ REMARK 470 LYS C 365 CG CD CE NZ REMARK 470 LYS C 368 CG CD CE NZ REMARK 470 LYS C 398 CG CD CE NZ REMARK 470 LYS C 409 CE NZ REMARK 470 ASN C 413 CG OD1 ND2 REMARK 470 LYS C 414 CG CD CE NZ REMARK 470 LYS C 420 CG CD CE NZ REMARK 470 LYS C 424 CG CD CE NZ REMARK 470 ARG C 438 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 441 CG OD1 OD2 REMARK 470 ASN C 444 CG OD1 ND2 REMARK 470 ARG C 466 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 472 CG CD CE NZ REMARK 470 GLU C 473 CG CD OE1 OE2 REMARK 470 LYS C 504 CG CD CE NZ REMARK 470 GLU C 517 CG CD OE1 OE2 REMARK 470 LYS C 542 CG CD CE NZ REMARK 470 ARG C 545 CZ NH1 NH2 REMARK 470 ARG C 574 CZ NH1 NH2 REMARK 470 LYS C 579 CE NZ REMARK 470 LYS C 589 CG CD CE NZ REMARK 470 ARG C 595 NE CZ NH1 NH2 REMARK 470 LYS D 365 CG CD CE NZ REMARK 470 LYS D 368 CG CD CE NZ REMARK 470 LYS D 394 CG CD CE NZ REMARK 470 LYS D 398 CG CD CE NZ REMARK 470 ASN D 413 CG OD1 ND2 REMARK 470 LYS D 414 CG CD CE NZ REMARK 470 LYS D 423 CG CD CE NZ REMARK 470 LYS D 424 CG CD CE NZ REMARK 470 LYS D 482 CD CE NZ REMARK 470 LYS D 501 CD CE NZ REMARK 470 LYS D 504 CG CD CE NZ REMARK 470 LYS D 542 CG CD CE NZ REMARK 470 ARG D 545 CZ NH1 NH2 REMARK 470 ARG D 549 CD NE CZ NH1 NH2 REMARK 470 ARG D 574 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 575 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 579 CG CD CE NZ REMARK 470 C G 12 C2 O2 N3 C4 N4 C5 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O6 G G 7 O6 G H 7 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 437 75.72 -106.91 REMARK 500 MET A 440 32.68 -94.19 REMARK 500 ASP A 565 78.92 -151.39 REMARK 500 LYS B 409 31.97 -96.39 REMARK 500 ALA B 494 -88.85 -80.50 REMARK 500 ARG C 438 -71.31 3.48 REMARK 500 PRO C 486 -20.00 -49.39 REMARK 500 ALA C 494 -71.66 -87.77 REMARK 500 PRO D 486 -16.04 -47.67 REMARK 500 ALA D 494 -72.55 -93.19 REMARK 500 ASP D 565 77.48 -150.25 REMARK 500 ASP D 596 -77.43 60.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DAX RELATED DB: PDB REMARK 900 RELATED ID: 4DAZ RELATED DB: PDB REMARK 900 RELATED ID: 4DB4 RELATED DB: PDB DBREF 4DB2 A 342 596 UNP P15424 MS116_YEAST 342 596 DBREF 4DB2 B 342 596 UNP P15424 MS116_YEAST 342 596 DBREF 4DB2 C 342 596 UNP P15424 MS116_YEAST 342 596 DBREF 4DB2 D 342 596 UNP P15424 MS116_YEAST 342 596 DBREF 4DB2 E -3 10 PDB 4DB2 4DB2 -3 10 DBREF 4DB2 F 0 13 PDB 4DB2 4DB2 0 13 DBREF 4DB2 G 1 14 PDB 4DB2 4DB2 1 14 DBREF 4DB2 H 1 14 PDB 4DB2 4DB2 1 14 DBREF 4DB2 I -2 11 PDB 4DB2 4DB2 -2 11 DBREF 4DB2 J -1 12 PDB 4DB2 4DB2 -1 12 SEQADV 4DB2 SER A 341 UNP P15424 EXPRESSION TAG SEQADV 4DB2 TYR A 597 UNP P15424 EXPRESSION TAG SEQADV 4DB2 SER B 341 UNP P15424 EXPRESSION TAG SEQADV 4DB2 TYR B 597 UNP P15424 EXPRESSION TAG SEQADV 4DB2 SER C 341 UNP P15424 EXPRESSION TAG SEQADV 4DB2 TYR C 597 UNP P15424 EXPRESSION TAG SEQADV 4DB2 SER D 341 UNP P15424 EXPRESSION TAG SEQADV 4DB2 TYR D 597 UNP P15424 EXPRESSION TAG SEQRES 1 A 257 SER ILE ASP GLN SER VAL VAL ILE SER GLU LYS PHE ALA SEQRES 2 A 257 ASN SER ILE PHE ALA ALA VAL GLU HIS ILE LYS LYS GLN SEQRES 3 A 257 ILE LYS GLU ARG ASP SER ASN TYR LYS ALA ILE ILE PHE SEQRES 4 A 257 ALA PRO THR VAL LYS PHE THR SER PHE LEU CYS SER ILE SEQRES 5 A 257 LEU LYS ASN GLU PHE LYS LYS ASP LEU PRO ILE LEU GLU SEQRES 6 A 257 PHE HIS GLY LYS ILE THR GLN ASN LYS ARG THR SER LEU SEQRES 7 A 257 VAL LYS ARG PHE LYS LYS ASP GLU SER GLY ILE LEU VAL SEQRES 8 A 257 CYS THR ASP VAL GLY ALA ARG GLY MET ASP PHE PRO ASN SEQRES 9 A 257 VAL HIS GLU VAL LEU GLN ILE GLY VAL PRO SER GLU LEU SEQRES 10 A 257 ALA ASN TYR ILE HIS ARG ILE GLY ARG THR ALA ARG SER SEQRES 11 A 257 GLY LYS GLU GLY SER SER VAL LEU PHE ILE CYS LYS ASP SEQRES 12 A 257 GLU LEU PRO PHE VAL ARG GLU LEU GLU ASP ALA LYS ASN SEQRES 13 A 257 ILE VAL ILE ALA LYS GLN GLU LYS TYR GLU PRO SER GLU SEQRES 14 A 257 GLU ILE LYS SER GLU VAL LEU GLU ALA VAL THR GLU GLU SEQRES 15 A 257 PRO GLU ASP ILE SER ASP ILE VAL ILE SER LEU ILE SER SEQRES 16 A 257 SER TYR ARG SER CYS ILE LYS GLU TYR ARG PHE SER GLU SEQRES 17 A 257 ARG ARG ILE LEU PRO GLU ILE ALA SER THR TYR GLY VAL SEQRES 18 A 257 LEU LEU ASN ASP PRO GLN LEU LYS ILE PRO VAL SER ARG SEQRES 19 A 257 ARG PHE LEU ASP LYS LEU GLY LEU SER ARG SER PRO ILE SEQRES 20 A 257 GLY LYS ALA MET PHE GLU ILE ARG ASP TYR SEQRES 1 B 257 SER ILE ASP GLN SER VAL VAL ILE SER GLU LYS PHE ALA SEQRES 2 B 257 ASN SER ILE PHE ALA ALA VAL GLU HIS ILE LYS LYS GLN SEQRES 3 B 257 ILE LYS GLU ARG ASP SER ASN TYR LYS ALA ILE ILE PHE SEQRES 4 B 257 ALA PRO THR VAL LYS PHE THR SER PHE LEU CYS SER ILE SEQRES 5 B 257 LEU LYS ASN GLU PHE LYS LYS ASP LEU PRO ILE LEU GLU SEQRES 6 B 257 PHE HIS GLY LYS ILE THR GLN ASN LYS ARG THR SER LEU SEQRES 7 B 257 VAL LYS ARG PHE LYS LYS ASP GLU SER GLY ILE LEU VAL SEQRES 8 B 257 CYS THR ASP VAL GLY ALA ARG GLY MET ASP PHE PRO ASN SEQRES 9 B 257 VAL HIS GLU VAL LEU GLN ILE GLY VAL PRO SER GLU LEU SEQRES 10 B 257 ALA ASN TYR ILE HIS ARG ILE GLY ARG THR ALA ARG SER SEQRES 11 B 257 GLY LYS GLU GLY SER SER VAL LEU PHE ILE CYS LYS ASP SEQRES 12 B 257 GLU LEU PRO PHE VAL ARG GLU LEU GLU ASP ALA LYS ASN SEQRES 13 B 257 ILE VAL ILE ALA LYS GLN GLU LYS TYR GLU PRO SER GLU SEQRES 14 B 257 GLU ILE LYS SER GLU VAL LEU GLU ALA VAL THR GLU GLU SEQRES 15 B 257 PRO GLU ASP ILE SER ASP ILE VAL ILE SER LEU ILE SER SEQRES 16 B 257 SER TYR ARG SER CYS ILE LYS GLU TYR ARG PHE SER GLU SEQRES 17 B 257 ARG ARG ILE LEU PRO GLU ILE ALA SER THR TYR GLY VAL SEQRES 18 B 257 LEU LEU ASN ASP PRO GLN LEU LYS ILE PRO VAL SER ARG SEQRES 19 B 257 ARG PHE LEU ASP LYS LEU GLY LEU SER ARG SER PRO ILE SEQRES 20 B 257 GLY LYS ALA MET PHE GLU ILE ARG ASP TYR SEQRES 1 C 257 SER ILE ASP GLN SER VAL VAL ILE SER GLU LYS PHE ALA SEQRES 2 C 257 ASN SER ILE PHE ALA ALA VAL GLU HIS ILE LYS LYS GLN SEQRES 3 C 257 ILE LYS GLU ARG ASP SER ASN TYR LYS ALA ILE ILE PHE SEQRES 4 C 257 ALA PRO THR VAL LYS PHE THR SER PHE LEU CYS SER ILE SEQRES 5 C 257 LEU LYS ASN GLU PHE LYS LYS ASP LEU PRO ILE LEU GLU SEQRES 6 C 257 PHE HIS GLY LYS ILE THR GLN ASN LYS ARG THR SER LEU SEQRES 7 C 257 VAL LYS ARG PHE LYS LYS ASP GLU SER GLY ILE LEU VAL SEQRES 8 C 257 CYS THR ASP VAL GLY ALA ARG GLY MET ASP PHE PRO ASN SEQRES 9 C 257 VAL HIS GLU VAL LEU GLN ILE GLY VAL PRO SER GLU LEU SEQRES 10 C 257 ALA ASN TYR ILE HIS ARG ILE GLY ARG THR ALA ARG SER SEQRES 11 C 257 GLY LYS GLU GLY SER SER VAL LEU PHE ILE CYS LYS ASP SEQRES 12 C 257 GLU LEU PRO PHE VAL ARG GLU LEU GLU ASP ALA LYS ASN SEQRES 13 C 257 ILE VAL ILE ALA LYS GLN GLU LYS TYR GLU PRO SER GLU SEQRES 14 C 257 GLU ILE LYS SER GLU VAL LEU GLU ALA VAL THR GLU GLU SEQRES 15 C 257 PRO GLU ASP ILE SER ASP ILE VAL ILE SER LEU ILE SER SEQRES 16 C 257 SER TYR ARG SER CYS ILE LYS GLU TYR ARG PHE SER GLU SEQRES 17 C 257 ARG ARG ILE LEU PRO GLU ILE ALA SER THR TYR GLY VAL SEQRES 18 C 257 LEU LEU ASN ASP PRO GLN LEU LYS ILE PRO VAL SER ARG SEQRES 19 C 257 ARG PHE LEU ASP LYS LEU GLY LEU SER ARG SER PRO ILE SEQRES 20 C 257 GLY LYS ALA MET PHE GLU ILE ARG ASP TYR SEQRES 1 D 257 SER ILE ASP GLN SER VAL VAL ILE SER GLU LYS PHE ALA SEQRES 2 D 257 ASN SER ILE PHE ALA ALA VAL GLU HIS ILE LYS LYS GLN SEQRES 3 D 257 ILE LYS GLU ARG ASP SER ASN TYR LYS ALA ILE ILE PHE SEQRES 4 D 257 ALA PRO THR VAL LYS PHE THR SER PHE LEU CYS SER ILE SEQRES 5 D 257 LEU LYS ASN GLU PHE LYS LYS ASP LEU PRO ILE LEU GLU SEQRES 6 D 257 PHE HIS GLY LYS ILE THR GLN ASN LYS ARG THR SER LEU SEQRES 7 D 257 VAL LYS ARG PHE LYS LYS ASP GLU SER GLY ILE LEU VAL SEQRES 8 D 257 CYS THR ASP VAL GLY ALA ARG GLY MET ASP PHE PRO ASN SEQRES 9 D 257 VAL HIS GLU VAL LEU GLN ILE GLY VAL PRO SER GLU LEU SEQRES 10 D 257 ALA ASN TYR ILE HIS ARG ILE GLY ARG THR ALA ARG SER SEQRES 11 D 257 GLY LYS GLU GLY SER SER VAL LEU PHE ILE CYS LYS ASP SEQRES 12 D 257 GLU LEU PRO PHE VAL ARG GLU LEU GLU ASP ALA LYS ASN SEQRES 13 D 257 ILE VAL ILE ALA LYS GLN GLU LYS TYR GLU PRO SER GLU SEQRES 14 D 257 GLU ILE LYS SER GLU VAL LEU GLU ALA VAL THR GLU GLU SEQRES 15 D 257 PRO GLU ASP ILE SER ASP ILE VAL ILE SER LEU ILE SER SEQRES 16 D 257 SER TYR ARG SER CYS ILE LYS GLU TYR ARG PHE SER GLU SEQRES 17 D 257 ARG ARG ILE LEU PRO GLU ILE ALA SER THR TYR GLY VAL SEQRES 18 D 257 LEU LEU ASN ASP PRO GLN LEU LYS ILE PRO VAL SER ARG SEQRES 19 D 257 ARG PHE LEU ASP LYS LEU GLY LEU SER ARG SER PRO ILE SEQRES 20 D 257 GLY LYS ALA MET PHE GLU ILE ARG ASP TYR SEQRES 1 E 14 G G G C G G G C C C G C C SEQRES 2 E 14 C SEQRES 1 F 14 G G G C G G G C C C G C C SEQRES 2 F 14 C SEQRES 1 G 14 G G G C G G G C C C G C C SEQRES 2 G 14 C SEQRES 1 H 14 G G G C G G G C C C G C C SEQRES 2 H 14 C SEQRES 1 I 14 G G G C G G G C C C G C C SEQRES 2 I 14 C SEQRES 1 J 14 G G G C G G G C C C G C C SEQRES 2 J 14 C HELIX 1 1 ALA A 353 ASP A 371 1 19 HELIX 2 2 THR A 382 LYS A 398 1 17 HELIX 3 3 THR A 411 ASP A 425 1 15 HELIX 4 4 ALA A 458 GLY A 465 1 8 HELIX 5 5 LEU A 485 ALA A 494 1 10 HELIX 6 6 SER A 508 VAL A 519 1 12 HELIX 7 7 GLU A 522 SER A 539 1 18 HELIX 8 8 CYS A 540 ARG A 545 1 6 HELIX 9 9 SER A 547 LEU A 563 1 17 HELIX 10 10 SER A 573 GLY A 581 1 9 HELIX 11 11 SER A 585 MET A 591 1 7 HELIX 12 12 ALA B 353 ASP B 371 1 19 HELIX 13 13 THR B 382 LYS B 398 1 17 HELIX 14 14 THR B 411 ASP B 425 1 15 HELIX 15 15 ALA B 458 GLY B 465 1 8 HELIX 16 16 LEU B 485 ALA B 494 1 10 HELIX 17 17 SER B 508 VAL B 519 1 12 HELIX 18 18 GLU B 522 CYS B 540 1 19 HELIX 19 19 CYS B 540 ARG B 545 1 6 HELIX 20 20 SER B 547 ASN B 564 1 18 HELIX 21 21 SER B 573 GLY B 581 1 9 HELIX 22 22 SER B 585 MET B 591 1 7 HELIX 23 23 ALA C 353 ASP C 371 1 19 HELIX 24 24 THR C 382 LYS C 398 1 17 HELIX 25 25 THR C 411 ASP C 425 1 15 HELIX 26 26 ALA C 458 GLY C 465 1 8 HELIX 27 27 LEU C 485 ALA C 494 1 10 HELIX 28 28 SER C 508 ALA C 518 1 11 HELIX 29 29 GLU C 522 CYS C 540 1 19 HELIX 30 30 CYS C 540 ARG C 545 1 6 HELIX 31 31 SER C 547 LEU C 563 1 17 HELIX 32 32 SER C 573 GLY C 581 1 9 HELIX 33 33 SER C 585 MET C 591 1 7 HELIX 34 34 ALA D 353 ASP D 371 1 19 HELIX 35 35 THR D 382 LYS D 398 1 17 HELIX 36 36 THR D 411 ASP D 425 1 15 HELIX 37 37 GLU D 456 GLY D 465 1 10 HELIX 38 38 LEU D 485 ALA D 494 1 10 HELIX 39 39 SER D 508 ALA D 518 1 11 HELIX 40 40 GLU D 522 CYS D 540 1 19 HELIX 41 41 CYS D 540 ARG D 545 1 6 HELIX 42 42 SER D 547 LEU D 563 1 17 HELIX 43 43 SER D 573 GLY D 581 1 9 HELIX 44 44 SER D 585 MET D 591 1 7 SHEET 1 A 7 ILE A 403 PHE A 406 0 SHEET 2 A 7 GLY A 428 CYS A 432 1 O VAL A 431 N LEU A 404 SHEET 3 A 7 LYS A 375 PHE A 379 1 N ILE A 378 O LEU A 430 SHEET 4 A 7 GLU A 447 ILE A 451 1 O LEU A 449 N ILE A 377 SHEET 5 A 7 GLY A 474 CYS A 481 1 O PHE A 479 N GLN A 450 SHEET 6 A 7 ILE A 342 SER A 349 1 N SER A 345 O LEU A 478 SHEET 7 A 7 LYS A 501 TYR A 505 1 O TYR A 505 N ILE A 348 SHEET 1 B 2 ILE A 570 VAL A 572 0 SHEET 2 B 2 PHE A 592 ILE A 594 1 O GLU A 593 N ILE A 570 SHEET 1 C 7 ILE B 403 PHE B 406 0 SHEET 2 C 7 GLY B 428 CYS B 432 1 O ILE B 429 N LEU B 404 SHEET 3 C 7 LYS B 375 PHE B 379 1 N ILE B 378 O LEU B 430 SHEET 4 C 7 GLU B 447 ILE B 451 1 O LEU B 449 N ILE B 377 SHEET 5 C 7 GLY B 474 CYS B 481 1 O PHE B 479 N GLN B 450 SHEET 6 C 7 ILE B 342 SER B 349 1 N ASP B 343 O GLY B 474 SHEET 7 C 7 LYS B 501 TYR B 505 1 O TYR B 505 N ILE B 348 SHEET 1 D 2 ILE B 570 VAL B 572 0 SHEET 2 D 2 PHE B 592 ILE B 594 1 O GLU B 593 N ILE B 570 SHEET 1 E 7 ILE C 403 PHE C 406 0 SHEET 2 E 7 GLY C 428 CYS C 432 1 O VAL C 431 N LEU C 404 SHEET 3 E 7 LYS C 375 PHE C 379 1 N ILE C 378 O LEU C 430 SHEET 4 E 7 GLU C 447 ILE C 451 1 O LEU C 449 N ILE C 377 SHEET 5 E 7 SER C 475 CYS C 481 1 O PHE C 479 N GLN C 450 SHEET 6 E 7 ASP C 343 SER C 349 1 N SER C 345 O LEU C 478 SHEET 7 E 7 LYS C 501 TYR C 505 1 O GLU C 503 N ILE C 348 SHEET 1 F 2 ILE C 570 VAL C 572 0 SHEET 2 F 2 PHE C 592 ILE C 594 1 O GLU C 593 N ILE C 570 SHEET 1 G 7 ILE D 403 PHE D 406 0 SHEET 2 G 7 GLY D 428 CYS D 432 1 O VAL D 431 N LEU D 404 SHEET 3 G 7 LYS D 375 PHE D 379 1 N ILE D 378 O LEU D 430 SHEET 4 G 7 GLU D 447 ILE D 451 1 O LEU D 449 N ILE D 377 SHEET 5 G 7 VAL D 477 CYS D 481 1 O PHE D 479 N GLN D 450 SHEET 6 G 7 SER D 345 SER D 349 1 N SER D 349 O ILE D 480 SHEET 7 G 7 LYS D 501 TYR D 505 1 O GLU D 503 N ILE D 348 SHEET 1 H 2 ILE D 570 VAL D 572 0 SHEET 2 H 2 PHE D 592 ILE D 594 1 O GLU D 593 N ILE D 570 CISPEP 1 GLY A 436 ALA A 437 0 1.33 CRYST1 160.534 88.422 121.238 90.00 90.00 90.00 P 21 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006229 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011309 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008248 0.00000