HEADER TRANSFERASE 13-JAN-12 4DB3 TITLE 1.95 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF N-ACETYL-D-GLUCOSAMINE TITLE 2 KINASE FROM VIBRIO VULNIFICUS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-ACETYL-D-GLUCOSAMINE KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GLCNAC KINASE; COMPND 5 EC: 2.7.1.59; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO VULNIFICUS; SOURCE 3 ORGANISM_TAXID: 672; SOURCE 4 STRAIN: CMCP6; SOURCE 5 GENE: NAGK, VV1_2570; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.MINASOV,Z.WAWRZAK,O.ONOPRIYENKO,T.SKARINA,L.PAPAZISI,A.SAVCHENKO, AUTHOR 2 W.F.ANDERSON,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 3 (CSGID) REVDAT 3 13-SEP-23 4DB3 1 REMARK SEQADV LINK REVDAT 2 15-NOV-17 4DB3 1 REMARK REVDAT 1 25-JAN-12 4DB3 0 JRNL AUTH G.MINASOV,Z.WAWRZAK,O.ONOPRIYENKO,T.SKARINA,L.PAPAZISI, JRNL AUTH 2 A.SAVCHENKO,W.F.ANDERSON, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL 1.95 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF JRNL TITL 2 N-ACETYL-D-GLUCOSAMINE KINASE FROM VIBRIO VULNIFICUS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 27919 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1498 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2024 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE SET COUNT : 110 REMARK 3 BIN FREE R VALUE : 0.2620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2358 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 193 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.53000 REMARK 3 B22 (A**2) : 1.53000 REMARK 3 B33 (A**2) : -2.30000 REMARK 3 B12 (A**2) : 0.77000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.129 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.120 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.094 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.262 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2456 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1664 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3323 ; 1.453 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4072 ; 0.895 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 320 ; 2.972 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 106 ;32.618 ;24.811 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 408 ;10.158 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;11.856 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 355 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2808 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 492 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1559 ; 1.029 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 657 ; 0.317 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2475 ; 1.750 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 897 ; 2.922 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 848 ; 4.623 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -7 A 0 REMARK 3 ORIGIN FOR THE GROUP (A): 20.6280 9.1107 66.7995 REMARK 3 T TENSOR REMARK 3 T11: 0.4689 T22: 0.4941 REMARK 3 T33: 0.3499 T12: 0.0252 REMARK 3 T13: -0.0326 T23: 0.1603 REMARK 3 L TENSOR REMARK 3 L11: 18.0910 L22: 8.3648 REMARK 3 L33: 17.6126 L12: -9.8817 REMARK 3 L13: 5.0632 L23: -6.6378 REMARK 3 S TENSOR REMARK 3 S11: 0.1571 S12: 0.8579 S13: 0.3571 REMARK 3 S21: -0.6008 S22: -0.3119 S23: -0.5042 REMARK 3 S31: -0.5232 S32: -0.8897 S33: 0.1548 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 104 REMARK 3 ORIGIN FOR THE GROUP (A): 6.6842 13.6421 49.8605 REMARK 3 T TENSOR REMARK 3 T11: 0.2274 T22: 0.0998 REMARK 3 T33: 0.1230 T12: -0.0696 REMARK 3 T13: -0.0916 T23: 0.0573 REMARK 3 L TENSOR REMARK 3 L11: 2.6455 L22: 2.3972 REMARK 3 L33: 1.1358 L12: 0.2386 REMARK 3 L13: -0.1016 L23: -0.6626 REMARK 3 S TENSOR REMARK 3 S11: 0.1479 S12: -0.2583 S13: -0.2151 REMARK 3 S21: -0.0334 S22: -0.0653 S23: 0.1786 REMARK 3 S31: 0.3533 S32: -0.1645 S33: -0.0826 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 105 A 143 REMARK 3 ORIGIN FOR THE GROUP (A): 23.1114 23.2197 42.6031 REMARK 3 T TENSOR REMARK 3 T11: 0.1595 T22: 0.0630 REMARK 3 T33: 0.1367 T12: 0.0655 REMARK 3 T13: -0.0413 T23: 0.0367 REMARK 3 L TENSOR REMARK 3 L11: 3.1121 L22: 2.2455 REMARK 3 L33: 3.5036 L12: 0.1579 REMARK 3 L13: -0.8910 L23: -1.9986 REMARK 3 S TENSOR REMARK 3 S11: 0.1732 S12: -0.2181 S13: -0.3172 REMARK 3 S21: -0.1600 S22: -0.1621 S23: -0.2703 REMARK 3 S31: 0.3219 S32: 0.2220 S33: -0.0111 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 144 A 189 REMARK 3 ORIGIN FOR THE GROUP (A): 16.5755 28.4623 23.6451 REMARK 3 T TENSOR REMARK 3 T11: 0.2842 T22: 0.1044 REMARK 3 T33: 0.0555 T12: 0.0342 REMARK 3 T13: -0.0480 T23: -0.0303 REMARK 3 L TENSOR REMARK 3 L11: 2.3624 L22: 2.0352 REMARK 3 L33: 2.1016 L12: 0.5095 REMARK 3 L13: -0.2959 L23: 0.0888 REMARK 3 S TENSOR REMARK 3 S11: -0.0240 S12: 0.3855 S13: -0.1786 REMARK 3 S21: -0.5820 S22: 0.1347 S23: 0.0245 REMARK 3 S31: 0.2318 S32: -0.0470 S33: -0.1107 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 190 A 272 REMARK 3 ORIGIN FOR THE GROUP (A): 29.3155 19.4288 22.5622 REMARK 3 T TENSOR REMARK 3 T11: 0.4869 T22: 0.1220 REMARK 3 T33: 0.2480 T12: 0.1013 REMARK 3 T13: 0.1025 T23: -0.1152 REMARK 3 L TENSOR REMARK 3 L11: 2.2868 L22: 2.6063 REMARK 3 L33: 3.3589 L12: 0.2457 REMARK 3 L13: 0.1761 L23: 0.2313 REMARK 3 S TENSOR REMARK 3 S11: 0.0222 S12: 0.3813 S13: -0.6148 REMARK 3 S21: -0.7533 S22: 0.0107 S23: -0.2551 REMARK 3 S31: 0.6176 S32: 0.1930 S33: -0.0329 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 273 A 303 REMARK 3 ORIGIN FOR THE GROUP (A): 26.3039 22.3790 42.4375 REMARK 3 T TENSOR REMARK 3 T11: 0.1788 T22: 0.0964 REMARK 3 T33: 0.1278 T12: 0.0605 REMARK 3 T13: -0.0345 T23: 0.0187 REMARK 3 L TENSOR REMARK 3 L11: 3.2944 L22: 3.2696 REMARK 3 L33: 3.5749 L12: 2.3808 REMARK 3 L13: -2.1910 L23: -2.0076 REMARK 3 S TENSOR REMARK 3 S11: 0.0562 S12: -0.3435 S13: -0.3953 REMARK 3 S21: -0.2697 S22: -0.1835 S23: -0.3600 REMARK 3 S31: 0.3959 S32: 0.3914 S33: 0.1273 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4DB3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000070107. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29453 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.55700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2AP1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION: 2.5 MG/ML, 0.3M REMARK 280 SODIUM CHLORIDE, 0.01M HEPES PH 7.5. SCREEN SOLUTION: 0.1M REMARK 280 LITHIUM SULFATE, 0.1M BIS-TRIS PROPANE PH 7.0. CRYO: 0.1M LI REMARK 280 SULFATE, 0.1M BIS-TRIS PROPANE, 20% GLYCEROL, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.80600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 73.61200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 36.80600 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 73.61200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 40.20000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 69.62844 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 GLY A -14 REMARK 465 VAL A -13 REMARK 465 ASP A -12 REMARK 465 LEU A -11 REMARK 465 GLY A -10 REMARK 465 THR A -9 REMARK 465 GLU A -8 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 34 51.55 32.40 REMARK 500 ASP A 245 57.93 34.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 157 ND1 REMARK 620 2 CYS A 177 SG 97.7 REMARK 620 3 CYS A 179 SG 110.0 108.1 REMARK 620 4 CYS A 184 SG 120.5 110.5 109.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP91369 RELATED DB: TARGETTRACK DBREF 4DB3 A 1 303 UNP Q8D9M7 NAGK_VIBVU 1 303 SEQADV 4DB3 MET A -23 UNP Q8D9M7 EXPRESSION TAG SEQADV 4DB3 HIS A -22 UNP Q8D9M7 EXPRESSION TAG SEQADV 4DB3 HIS A -21 UNP Q8D9M7 EXPRESSION TAG SEQADV 4DB3 HIS A -20 UNP Q8D9M7 EXPRESSION TAG SEQADV 4DB3 HIS A -19 UNP Q8D9M7 EXPRESSION TAG SEQADV 4DB3 HIS A -18 UNP Q8D9M7 EXPRESSION TAG SEQADV 4DB3 HIS A -17 UNP Q8D9M7 EXPRESSION TAG SEQADV 4DB3 SER A -16 UNP Q8D9M7 EXPRESSION TAG SEQADV 4DB3 SER A -15 UNP Q8D9M7 EXPRESSION TAG SEQADV 4DB3 GLY A -14 UNP Q8D9M7 EXPRESSION TAG SEQADV 4DB3 VAL A -13 UNP Q8D9M7 EXPRESSION TAG SEQADV 4DB3 ASP A -12 UNP Q8D9M7 EXPRESSION TAG SEQADV 4DB3 LEU A -11 UNP Q8D9M7 EXPRESSION TAG SEQADV 4DB3 GLY A -10 UNP Q8D9M7 EXPRESSION TAG SEQADV 4DB3 THR A -9 UNP Q8D9M7 EXPRESSION TAG SEQADV 4DB3 GLU A -8 UNP Q8D9M7 EXPRESSION TAG SEQADV 4DB3 ASN A -7 UNP Q8D9M7 EXPRESSION TAG SEQADV 4DB3 LEU A -6 UNP Q8D9M7 EXPRESSION TAG SEQADV 4DB3 TYR A -5 UNP Q8D9M7 EXPRESSION TAG SEQADV 4DB3 PHE A -4 UNP Q8D9M7 EXPRESSION TAG SEQADV 4DB3 GLN A -3 UNP Q8D9M7 EXPRESSION TAG SEQADV 4DB3 SER A -2 UNP Q8D9M7 EXPRESSION TAG SEQADV 4DB3 ASN A -1 UNP Q8D9M7 EXPRESSION TAG SEQADV 4DB3 ALA A 0 UNP Q8D9M7 EXPRESSION TAG SEQRES 1 A 327 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 327 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA MET TYR SEQRES 3 A 327 TYR GLY PHE ASP VAL GLY GLY THR LYS ILE GLU PHE GLY SEQRES 4 A 327 ALA PHE ASN GLU LYS LEU GLU ARG VAL ALA THR GLU ARG SEQRES 5 A 327 VAL PRO THR PRO THR ASP ASP TYR PRO LEU LEU LEU GLU SEQRES 6 A 327 THR ILE ALA GLY LEU VAL ALA LYS TYR ASP GLN GLU PHE SEQRES 7 A 327 ALA CYS GLU GLY LYS ILE GLY LEU GLY LEU PRO GLY MET SEQRES 8 A 327 GLU ASP ALA ASP ASP ALA THR VAL LEU THR VAL ASN VAL SEQRES 9 A 327 PRO ALA ALA LYS GLY LYS PRO LEU ARG ALA ASP LEU GLU SEQRES 10 A 327 ALA LYS ILE GLY ARG SER VAL LYS ILE GLU ASN ASP ALA SEQRES 11 A 327 ASN CYS PHE ALA LEU SER GLU ALA TRP ASP GLU GLU LEU SEQRES 12 A 327 GLN ASP ALA PRO SER VAL MET GLY LEU ILE LEU GLY THR SEQRES 13 A 327 GLY PHE GLY GLY GLY LEU ILE TYR GLU GLY LYS VAL PHE SEQRES 14 A 327 SER GLY ARG ASN ASN VAL ALA GLY GLU LEU GLY HIS MET SEQRES 15 A 327 ARG LEU PRO LEU ASP ALA TRP PHE HIS LEU GLY ASP ASN SEQRES 16 A 327 ALA PRO LEU LEU GLY CYS GLY CYS GLY LYS LYS GLY CYS SEQRES 17 A 327 LEU ASP SER TYR LEU SER GLY ARG GLY PHE GLU LEU LEU SEQRES 18 A 327 TYR ALA HIS TYR TYR GLY GLU GLU LYS LYS ALA ILE ASP SEQRES 19 A 327 ILE ILE LYS ALA ASN ALA ALA GLY ASP GLU LYS ALA ALA SEQRES 20 A 327 GLU HIS VAL GLU ARG PHE MET GLU LEU LEU ALA ILE CYS SEQRES 21 A 327 PHE GLY ASN ILE PHE THR ALA ASN ASP PRO HIS VAL VAL SEQRES 22 A 327 ALA LEU GLY GLY GLY LEU SER ASN PHE GLU LEU ILE TYR SEQRES 23 A 327 GLU GLU MET PRO LYS ARG VAL PRO LYS TYR LEU LEU SER SEQRES 24 A 327 VAL ALA LYS CYS PRO LYS ILE ILE LYS ALA LYS HIS GLY SEQRES 25 A 327 ASP SER GLY GLY VAL ARG GLY ALA ALA PHE LEU ASN ILE SEQRES 26 A 327 LYS GLY HET ZN A 401 1 HET CL A 402 1 HET CL A 403 2 HET SO4 A 404 5 HET GOL A 405 6 HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN ZN 2+ FORMUL 3 CL 2(CL 1-) FORMUL 5 SO4 O4 S 2- FORMUL 6 GOL C3 H8 O3 FORMUL 7 HOH *193(H2 O) HELIX 1 1 ASP A 35 ALA A 55 1 21 HELIX 2 2 VAL A 80 LYS A 84 5 5 HELIX 3 3 PRO A 87 GLY A 97 1 11 HELIX 4 4 ASP A 105 TRP A 115 1 11 HELIX 5 5 GLU A 154 MET A 158 5 5 HELIX 6 6 PRO A 161 LEU A 168 1 8 HELIX 7 7 CYS A 184 TYR A 188 5 5 HELIX 8 8 SER A 190 GLY A 203 1 14 HELIX 9 9 LYS A 207 GLY A 218 1 12 HELIX 10 10 ASP A 219 ASP A 245 1 27 HELIX 11 11 GLY A 253 PHE A 258 5 6 HELIX 12 12 GLU A 259 VAL A 269 1 11 HELIX 13 13 PRO A 270 LEU A 273 5 4 HELIX 14 14 HIS A 287 ASP A 289 5 3 HELIX 15 15 SER A 290 LEU A 299 1 10 SHEET 1 A 5 ARG A 23 PRO A 30 0 SHEET 2 A 5 LYS A 11 PHE A 17 -1 N PHE A 14 O GLU A 27 SHEET 3 A 5 TYR A 2 VAL A 7 -1 N GLY A 4 O GLY A 15 SHEET 4 A 5 LYS A 59 LEU A 64 1 O LYS A 59 N TYR A 3 SHEET 5 A 5 LYS A 101 ASN A 104 1 O LYS A 101 N LEU A 62 SHEET 1 B 2 GLY A 66 GLU A 68 0 SHEET 2 B 2 VAL A 75 THR A 77 -1 O LEU A 76 N MET A 67 SHEET 1 C 5 LYS A 143 VAL A 144 0 SHEET 2 C 5 PHE A 134 TYR A 140 -1 N TYR A 140 O LYS A 143 SHEET 3 C 5 SER A 124 LEU A 130 -1 N VAL A 125 O ILE A 139 SHEET 4 C 5 VAL A 248 GLY A 252 1 O GLY A 252 N LEU A 130 SHEET 5 C 5 LYS A 281 LYS A 284 1 O ILE A 283 N VAL A 249 LINK ND1 HIS A 157 ZN ZN A 401 1555 1555 2.22 LINK SG CYS A 177 ZN ZN A 401 1555 1555 2.42 LINK SG CYS A 179 ZN ZN A 401 1555 1555 2.30 LINK SG CYS A 184 ZN ZN A 401 1555 1555 2.27 SITE 1 AC1 4 HIS A 157 CYS A 177 CYS A 179 CYS A 184 SITE 1 AC2 1 ARG A 294 SITE 1 AC3 1 GLY A 254 SITE 1 AC4 3 ARG A 98 SER A 99 HOH A 561 SITE 1 AC5 9 PRO A 123 VAL A 144 PHE A 145 SER A 146 SITE 2 AC5 9 GLY A 147 HIS A 247 HOH A 563 HOH A 582 SITE 3 AC5 9 HOH A 634 CRYST1 80.400 80.400 110.418 90.00 90.00 120.00 P 64 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012438 0.007181 0.000000 0.00000 SCALE2 0.000000 0.014362 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009056 0.00000