HEADER IMMUNE SYSTEM 13-JAN-12 4DB5 TITLE CRYSTAL STRUCTURE OF RABBIT GITRL COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUMOR NECROSIS FACTOR LIGAND SUPERFAMILY MEMBER 18; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: EUROPEAN RABBIT,JAPANESE WHITE RABBIT,DOMESTIC SOURCE 4 RABBIT,RABBITS; SOURCE 5 ORGANISM_TAXID: 9986; SOURCE 6 GENE: GITRL, TNFSF18; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS GITRL, GLUCOCORTICOID-INDUCED TNF RECEPTOR LIGAND, IMMUNE SYSTEM, KEYWDS 2 TNFRSF18, STRUCTURAL GENOMICS, PSI-BIOLOGY, NEW YORK STRUCTURAL KEYWDS 3 GENOMICS RESEARCH CONSORTIUM, NYSGRC, ATOMS-TO-ANIMALS: THE IMMUNE KEYWDS 4 FUNCTION NETWORK, IFN EXPDTA X-RAY DIFFRACTION AUTHOR P.R.KUMAR,R.BHOSLE,A.GIZZI,A.SCOTT GLENN,S.CHOWHURY,B.HILLERICH, AUTHOR 2 R.SEIDEL,S.G.NATHENSON,S.C.ALMO,NEW YORK STRUCTURAL GENOMICS AUTHOR 3 RESEARCH CONSORTIUM (NYSGRC),ATOMS-TO-ANIMALS: THE IMMUNE FUNCTION AUTHOR 4 NETWORK (IFN) REVDAT 3 13-SEP-23 4DB5 1 REMARK REVDAT 2 06-JUN-12 4DB5 1 AUTHOR REVDAT 1 21-MAR-12 4DB5 0 JRNL AUTH P.R.KUMAR,R.BHOSLE,A.GIZZI,A.SCOTT GLENN,S.CHOWHURY, JRNL AUTH 2 B.HILLERICH,R.SEIDEL,S.G.NATHENSON,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF GITRL FROM ORYCTOLAGUS CUNICULUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.3_928 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 26128 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1333 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.1519 - 3.2769 1.00 2585 119 0.1565 0.1657 REMARK 3 2 3.2769 - 2.6015 1.00 2489 146 0.1691 0.1602 REMARK 3 3 2.6015 - 2.2728 1.00 2480 139 0.1594 0.1830 REMARK 3 4 2.2728 - 2.0651 1.00 2480 129 0.1476 0.1817 REMARK 3 5 2.0651 - 1.9171 1.00 2452 118 0.1549 0.1691 REMARK 3 6 1.9171 - 1.8041 1.00 2482 133 0.1584 0.1860 REMARK 3 7 1.8041 - 1.7137 1.00 2424 157 0.1621 0.1721 REMARK 3 8 1.7137 - 1.6391 1.00 2465 124 0.1670 0.1974 REMARK 3 9 1.6391 - 1.5760 1.00 2461 124 0.1731 0.1848 REMARK 3 10 1.5760 - 1.5217 1.00 2477 144 0.1916 0.2516 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.44 REMARK 3 B_SOL : 53.36 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1101 REMARK 3 ANGLE : 1.171 1508 REMARK 3 CHIRALITY : 0.080 160 REMARK 3 PLANARITY : 0.005 197 REMARK 3 DIHEDRAL : 18.525 424 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 5:26) REMARK 3 ORIGIN FOR THE GROUP (A): -2.9821 -22.5775 -11.6534 REMARK 3 T TENSOR REMARK 3 T11: 0.0770 T22: 0.1121 REMARK 3 T33: 0.1559 T12: 0.0008 REMARK 3 T13: 0.0572 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 2.9317 L22: 1.7549 REMARK 3 L33: 3.5404 L12: -0.3997 REMARK 3 L13: -0.3154 L23: 0.4299 REMARK 3 S TENSOR REMARK 3 S11: 0.0895 S12: -0.0362 S13: 0.1924 REMARK 3 S21: 0.0648 S22: -0.0251 S23: 0.4175 REMARK 3 S31: -0.2407 S32: -0.2396 S33: -0.0367 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 27:90) REMARK 3 ORIGIN FOR THE GROUP (A): 7.2813 -26.2788 -21.6007 REMARK 3 T TENSOR REMARK 3 T11: 0.0738 T22: 0.0741 REMARK 3 T33: 0.0902 T12: 0.0167 REMARK 3 T13: 0.0026 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 0.3186 L22: 2.1304 REMARK 3 L33: 0.6206 L12: -0.0502 REMARK 3 L13: 0.1161 L23: 0.1728 REMARK 3 S TENSOR REMARK 3 S11: 0.0271 S12: 0.0215 S13: 0.0198 REMARK 3 S21: 0.0178 S22: 0.0263 S23: 0.0204 REMARK 3 S31: 0.0389 S32: -0.0191 S33: -0.0486 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 91:125) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1322 -21.8708 -20.6955 REMARK 3 T TENSOR REMARK 3 T11: 0.0458 T22: 0.0894 REMARK 3 T33: 0.1076 T12: 0.0035 REMARK 3 T13: 0.0280 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.9396 L22: 4.0802 REMARK 3 L33: 0.6721 L12: -1.4459 REMARK 3 L13: 0.0848 L23: 0.0905 REMARK 3 S TENSOR REMARK 3 S11: 0.0594 S12: 0.0304 S13: 0.0071 REMARK 3 S21: -0.1803 S22: -0.0098 S23: 0.0859 REMARK 3 S31: -0.0468 S32: -0.0444 S33: -0.0546 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4DB5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000070109. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-SEP-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0750 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26128 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.520 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 33.10 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 32.80 REMARK 200 R MERGE FOR SHELL (I) : 0.68800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.7.3_928 REMARK 200 STARTING MODEL: PDB ENTRY 3FC0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (20 MM HEPES, PH 7.5, 150 MM REMARK 280 NACL, 10% GLYCEROL; RESERVOIR (0.1M BIS-TRIS PROPANE PH 7.0, REMARK 280 2.4M DL-MALIC ACID); CRYOPROTECTION (RESERVOIR + 30% GLYCEROL), REMARK 280 SITTING DROP, VAPOR DIFFUSION, TEMPERATURE 298K, VAPOR DIFFUSION, REMARK 280 SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: F 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X,Y+1/2,Z+1/2 REMARK 290 14555 -X,-Y+1/2,Z+1/2 REMARK 290 15555 -X,Y+1/2,-Z+1/2 REMARK 290 16555 X,-Y+1/2,-Z+1/2 REMARK 290 17555 Z,X+1/2,Y+1/2 REMARK 290 18555 Z,-X+1/2,-Y+1/2 REMARK 290 19555 -Z,-X+1/2,Y+1/2 REMARK 290 20555 -Z,X+1/2,-Y+1/2 REMARK 290 21555 Y,Z+1/2,X+1/2 REMARK 290 22555 -Y,Z+1/2,-X+1/2 REMARK 290 23555 Y,-Z+1/2,-X+1/2 REMARK 290 24555 -Y,-Z+1/2,X+1/2 REMARK 290 25555 X+1/2,Y,Z+1/2 REMARK 290 26555 -X+1/2,-Y,Z+1/2 REMARK 290 27555 -X+1/2,Y,-Z+1/2 REMARK 290 28555 X+1/2,-Y,-Z+1/2 REMARK 290 29555 Z+1/2,X,Y+1/2 REMARK 290 30555 Z+1/2,-X,-Y+1/2 REMARK 290 31555 -Z+1/2,-X,Y+1/2 REMARK 290 32555 -Z+1/2,X,-Y+1/2 REMARK 290 33555 Y+1/2,Z,X+1/2 REMARK 290 34555 -Y+1/2,Z,-X+1/2 REMARK 290 35555 Y+1/2,-Z,-X+1/2 REMARK 290 36555 -Y+1/2,-Z,X+1/2 REMARK 290 37555 X+1/2,Y+1/2,Z REMARK 290 38555 -X+1/2,-Y+1/2,Z REMARK 290 39555 -X+1/2,Y+1/2,-Z REMARK 290 40555 X+1/2,-Y+1/2,-Z REMARK 290 41555 Z+1/2,X+1/2,Y REMARK 290 42555 Z+1/2,-X+1/2,-Y REMARK 290 43555 -Z+1/2,-X+1/2,Y REMARK 290 44555 -Z+1/2,X+1/2,-Y REMARK 290 45555 Y+1/2,Z+1/2,X REMARK 290 46555 -Y+1/2,Z+1/2,-X REMARK 290 47555 Y+1/2,-Z+1/2,-X REMARK 290 48555 -Y+1/2,-Z+1/2,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 63.52350 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 63.52350 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 63.52350 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 63.52350 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 63.52350 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 63.52350 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 63.52350 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 63.52350 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 63.52350 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 63.52350 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 63.52350 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 63.52350 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 63.52350 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 63.52350 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 63.52350 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 63.52350 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 63.52350 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 63.52350 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 63.52350 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 63.52350 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 63.52350 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 63.52350 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 63.52350 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 63.52350 REMARK 290 SMTRY1 25 1.000000 0.000000 0.000000 63.52350 REMARK 290 SMTRY2 25 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 25 0.000000 0.000000 1.000000 63.52350 REMARK 290 SMTRY1 26 -1.000000 0.000000 0.000000 63.52350 REMARK 290 SMTRY2 26 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 26 0.000000 0.000000 1.000000 63.52350 REMARK 290 SMTRY1 27 -1.000000 0.000000 0.000000 63.52350 REMARK 290 SMTRY2 27 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 27 0.000000 0.000000 -1.000000 63.52350 REMARK 290 SMTRY1 28 1.000000 0.000000 0.000000 63.52350 REMARK 290 SMTRY2 28 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 28 0.000000 0.000000 -1.000000 63.52350 REMARK 290 SMTRY1 29 0.000000 0.000000 1.000000 63.52350 REMARK 290 SMTRY2 29 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 29 0.000000 1.000000 0.000000 63.52350 REMARK 290 SMTRY1 30 0.000000 0.000000 1.000000 63.52350 REMARK 290 SMTRY2 30 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 30 0.000000 -1.000000 0.000000 63.52350 REMARK 290 SMTRY1 31 0.000000 0.000000 -1.000000 63.52350 REMARK 290 SMTRY2 31 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 31 0.000000 1.000000 0.000000 63.52350 REMARK 290 SMTRY1 32 0.000000 0.000000 -1.000000 63.52350 REMARK 290 SMTRY2 32 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 32 0.000000 -1.000000 0.000000 63.52350 REMARK 290 SMTRY1 33 0.000000 1.000000 0.000000 63.52350 REMARK 290 SMTRY2 33 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 33 1.000000 0.000000 0.000000 63.52350 REMARK 290 SMTRY1 34 0.000000 -1.000000 0.000000 63.52350 REMARK 290 SMTRY2 34 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 34 -1.000000 0.000000 0.000000 63.52350 REMARK 290 SMTRY1 35 0.000000 1.000000 0.000000 63.52350 REMARK 290 SMTRY2 35 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 35 -1.000000 0.000000 0.000000 63.52350 REMARK 290 SMTRY1 36 0.000000 -1.000000 0.000000 63.52350 REMARK 290 SMTRY2 36 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 36 1.000000 0.000000 0.000000 63.52350 REMARK 290 SMTRY1 37 1.000000 0.000000 0.000000 63.52350 REMARK 290 SMTRY2 37 0.000000 1.000000 0.000000 63.52350 REMARK 290 SMTRY3 37 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 38 -1.000000 0.000000 0.000000 63.52350 REMARK 290 SMTRY2 38 0.000000 -1.000000 0.000000 63.52350 REMARK 290 SMTRY3 38 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 39 -1.000000 0.000000 0.000000 63.52350 REMARK 290 SMTRY2 39 0.000000 1.000000 0.000000 63.52350 REMARK 290 SMTRY3 39 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 40 1.000000 0.000000 0.000000 63.52350 REMARK 290 SMTRY2 40 0.000000 -1.000000 0.000000 63.52350 REMARK 290 SMTRY3 40 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 41 0.000000 0.000000 1.000000 63.52350 REMARK 290 SMTRY2 41 1.000000 0.000000 0.000000 63.52350 REMARK 290 SMTRY3 41 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 42 0.000000 0.000000 1.000000 63.52350 REMARK 290 SMTRY2 42 -1.000000 0.000000 0.000000 63.52350 REMARK 290 SMTRY3 42 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 43 0.000000 0.000000 -1.000000 63.52350 REMARK 290 SMTRY2 43 -1.000000 0.000000 0.000000 63.52350 REMARK 290 SMTRY3 43 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 44 0.000000 0.000000 -1.000000 63.52350 REMARK 290 SMTRY2 44 1.000000 0.000000 0.000000 63.52350 REMARK 290 SMTRY3 44 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 45 0.000000 1.000000 0.000000 63.52350 REMARK 290 SMTRY2 45 0.000000 0.000000 1.000000 63.52350 REMARK 290 SMTRY3 45 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 46 0.000000 -1.000000 0.000000 63.52350 REMARK 290 SMTRY2 46 0.000000 0.000000 1.000000 63.52350 REMARK 290 SMTRY3 46 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 47 0.000000 1.000000 0.000000 63.52350 REMARK 290 SMTRY2 47 0.000000 0.000000 -1.000000 63.52350 REMARK 290 SMTRY3 47 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 48 0.000000 -1.000000 0.000000 63.52350 REMARK 290 SMTRY2 48 0.000000 0.000000 -1.000000 63.52350 REMARK 290 SMTRY3 48 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TRIMER GENERATED FROM THE REMARK 300 MONOMER IN THE ASYMMETRIC UNIT BY CRYSTALLOGRAPHIC SYMMETRY REMARK 300 OPERATIONS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 31390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 52660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -152.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 -63.52350 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -63.52350 REMARK 350 BIOMT1 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 5 1.000000 0.000000 0.000000 -63.52350 REMARK 350 BIOMT3 5 0.000000 -1.000000 0.000000 -63.52350 REMARK 350 BIOMT1 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 0.000000 -1.000000 -63.52350 REMARK 350 BIOMT3 6 1.000000 0.000000 0.000000 -63.52350 REMARK 350 BIOMT1 7 -1.000000 0.000000 0.000000 63.52350 REMARK 350 BIOMT2 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 -63.52350 REMARK 350 BIOMT1 8 0.000000 0.000000 1.000000 63.52350 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 -1.000000 0.000000 -63.52350 REMARK 350 BIOMT1 9 0.000000 1.000000 0.000000 63.52350 REMARK 350 BIOMT2 9 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 9 1.000000 0.000000 0.000000 -63.52350 REMARK 350 BIOMT1 10 -1.000000 0.000000 0.000000 63.52350 REMARK 350 BIOMT2 10 0.000000 -1.000000 0.000000 -63.52350 REMARK 350 BIOMT3 10 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 11 0.000000 0.000000 1.000000 63.52350 REMARK 350 BIOMT2 11 1.000000 0.000000 0.000000 -63.52350 REMARK 350 BIOMT3 11 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 12 0.000000 1.000000 0.000000 63.52350 REMARK 350 BIOMT2 12 0.000000 0.000000 -1.000000 -63.52350 REMARK 350 BIOMT3 12 -1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 303 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 404 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 405 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 3 REMARK 465 GLU A 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 87 O HOH A 322 2.17 REMARK 500 O HOH A 421 O HOH A 422 2.17 REMARK 500 OD1 ASN A 28 O HOH A 319 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 374 O HOH A 402 10555 2.12 REMARK 500 O HOH A 356 O HOH A 402 10555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 16 -130.56 -105.89 REMARK 500 TRP A 33 -0.31 72.52 REMARK 500 ASN A 110 24.18 -141.36 REMARK 500 THR A 120 73.05 -118.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE B3P A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-011123 RELATED DB: TARGETTRACK DBREF 4DB5 A 1 125 UNP G1TIM1 G1TIM1_RABIT 54 178 SEQRES 1 A 125 THR ALA LYS GLU ALA CYS VAL ALA LYS PHE GLY PRO LEU SEQRES 2 A 125 PRO SER LYS TRP GLN MET GLU PRO PRO LYS PRO SER CYS SEQRES 3 A 125 VAL ASN LYS ILE SER ASP TRP LYS LEU LYS ILE LEU GLN SEQRES 4 A 125 ASN GLY LEU TYR ILE ILE TYR GLY GLN VAL ALA PRO ASP SEQRES 5 A 125 PRO THR TYR LYS GLY PHE ALA PRO PHE GLU VAL GLN LEU SEQRES 6 A 125 CYS LYS ASN LYS GLU ALA ILE GLN THR LEU THR ASN ASN SEQRES 7 A 125 SER LYS ILE GLN ASN LEU GLY GLY ILE TYR GLU PHE ASP SEQRES 8 A 125 ALA GLY ASP ILE ILE GLU LEU ARG PHE ASN SER ASP ASP SEQRES 9 A 125 GLN VAL LEU LYS ASN ASN THR TYR TRP GLY ILE VAL LEU SEQRES 10 A 125 LEU VAL THR PRO GLN PHE SER SER HET B3P A 201 19 HETNAM B3P 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)- HETNAM 2 B3P PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL FORMUL 2 B3P C11 H26 N2 O6 FORMUL 3 HOH *122(H2 O) HELIX 1 1 SER A 102 VAL A 106 5 5 HELIX 2 2 LEU A 107 THR A 111 5 5 HELIX 3 3 PRO A 121 SER A 125 5 5 SHEET 1 A 5 TRP A 17 GLU A 20 0 SHEET 2 A 5 VAL A 7 PHE A 10 -1 N LYS A 9 O GLN A 18 SHEET 3 A 5 TYR A 112 VAL A 119 -1 O TRP A 113 N PHE A 10 SHEET 4 A 5 GLY A 41 VAL A 49 -1 N LEU A 42 O LEU A 118 SHEET 5 A 5 GLN A 82 PHE A 90 -1 O TYR A 88 N TYR A 43 SHEET 1 B 5 VAL A 27 SER A 31 0 SHEET 2 B 5 LYS A 34 ILE A 37 -1 O LYS A 36 N ASN A 28 SHEET 3 B 5 ILE A 95 PHE A 100 -1 O ILE A 96 N LEU A 35 SHEET 4 B 5 VAL A 63 LYS A 67 -1 N CYS A 66 O GLU A 97 SHEET 5 B 5 GLU A 70 LEU A 75 -1 O LEU A 75 N VAL A 63 SSBOND 1 CYS A 6 CYS A 26 1555 1555 2.02 CISPEP 1 GLY A 11 PRO A 12 0 -5.01 CISPEP 2 LEU A 13 PRO A 14 0 9.11 CISPEP 3 GLU A 20 PRO A 21 0 -2.46 SITE 1 AC1 13 MET A 19 GLU A 20 PRO A 22 ASN A 40 SITE 2 AC1 13 ASP A 91 GLN A 122 PHE A 123 SER A 125 SITE 3 AC1 13 HOH A 331 HOH A 365 HOH A 391 HOH A 421 SITE 4 AC1 13 HOH A 422 CRYST1 127.047 127.047 127.047 90.00 90.00 90.00 F 2 3 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007871 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007871 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007871 0.00000