HEADER DE NOVO PROTEIN 13-JAN-12 4DB9 TITLE DESIGNED ARMADILLO REPEAT PROTEIN (YIIIM3AIII) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARMADILLO REPEAT PROTEIN, YIIIM3AIII; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: XL1 BLUE; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PPANK KEYWDS SOLENOID REPEAT, ARMADILLO REPEAT MOTIF, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.MADHURANTAKAM,G.VARADAMSETTY,M.G.GRUTTER,A.PLUCKTHUN,P.R.E.MITTL REVDAT 4 28-FEB-24 4DB9 1 REMARK REVDAT 3 05-SEP-12 4DB9 1 REMARK TITLE REVDAT 2 18-JUL-12 4DB9 1 JRNL REVDAT 1 16-MAY-12 4DB9 0 JRNL AUTH C.MADHURANTAKAM,G.VARADAMSETTY,M.G.GRUTTER,A.PLUCKTHUN, JRNL AUTH 2 P.R.MITTL JRNL TITL STRUCTURE-BASED OPTIMIZATION OF DESIGNED ARMADILLO-REPEAT JRNL TITL 2 PROTEINS. JRNL REF PROTEIN SCI. V. 21 1015 2012 JRNL REFN ISSN 0961-8368 JRNL PMID 22544642 JRNL DOI 10.1002/PRO.2085 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 65534 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3497 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4742 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE SET COUNT : 271 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9056 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 398 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.33000 REMARK 3 B22 (A**2) : -0.16000 REMARK 3 B33 (A**2) : 0.49000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.304 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.229 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.157 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.593 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.912 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.891 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 9236 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 12577 ; 1.036 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1224 ; 4.004 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 437 ;38.873 ;28.627 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1588 ;14.951 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;18.019 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1458 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7058 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 6102 ; 0.401 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 9695 ; 0.814 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3134 ; 1.336 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2882 ; 2.522 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4DB9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000070113. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 8.03 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : HELIOS MULTILAYER REMARK 200 OPTICS : HELIOS OPTICAL SYSTEM REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65534 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 34.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.55 M SODIUM MALONATE, PH 8.03, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.26500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.26500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 65.96000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 114.44000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 65.96000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 114.44000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.26500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 65.96000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 114.44000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 58.26500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 65.96000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 114.44000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ARG A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 HIS A 4 REMARK 465 SER A 208 REMARK 465 HIS A 209 REMARK 465 MET B 0 REMARK 465 ARG B 1 REMARK 465 GLY B 2 REMARK 465 SER B 3 REMARK 465 HIS B 4 REMARK 465 SER B 208 REMARK 465 HIS B 209 REMARK 465 MET C 0 REMARK 465 ARG C 1 REMARK 465 GLY C 2 REMARK 465 SER C 3 REMARK 465 HIS C 4 REMARK 465 SER C 208 REMARK 465 HIS C 209 REMARK 465 MET D 0 REMARK 465 ARG D 1 REMARK 465 GLY D 2 REMARK 465 SER D 3 REMARK 465 HIS D 4 REMARK 465 SER D 208 REMARK 465 HIS D 209 REMARK 465 MET E 0 REMARK 465 ARG E 1 REMARK 465 GLY E 2 REMARK 465 SER E 3 REMARK 465 HIS E 4 REMARK 465 SER E 208 REMARK 465 HIS E 209 REMARK 465 MET F 0 REMARK 465 ARG F 1 REMARK 465 GLY F 2 REMARK 465 SER F 3 REMARK 465 HIS F 4 REMARK 465 SER F 208 REMARK 465 HIS F 209 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 15 CG CD OE1 NE2 REMARK 470 GLN B 15 CG CD OE1 NE2 REMARK 470 GLN C 15 CG CD OE1 NE2 REMARK 470 GLU D 12 CG CD OE1 OE2 REMARK 470 GLN D 15 CG CD OE1 NE2 REMARK 470 GLN E 15 CG CD OE1 NE2 REMARK 470 GLN F 15 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU F 28 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE D 206 31.90 -94.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DB6 RELATED DB: PDB REMARK 900 DESIGNED ARMADILLO REPEAT PROTEIN (YIIIM3AII) REMARK 900 RELATED ID: 4DB8 RELATED DB: PDB REMARK 900 DESIGNED ARMADILLO REPEAT PROTEIN (YIIM4AII) REMARK 900 RELATED ID: 4DBA RELATED DB: PDB REMARK 900 DESIGNED ARMADILLO REPEAT PROTEIN (YIIM3AII) DBREF 4DB9 A 0 209 PDB 4DB9 4DB9 0 209 DBREF 4DB9 B 0 209 PDB 4DB9 4DB9 0 209 DBREF 4DB9 C 0 209 PDB 4DB9 4DB9 0 209 DBREF 4DB9 D 0 209 PDB 4DB9 4DB9 0 209 DBREF 4DB9 E 0 209 PDB 4DB9 4DB9 0 209 DBREF 4DB9 F 0 209 PDB 4DB9 4DB9 0 209 SEQRES 1 A 210 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER GLU SEQRES 2 A 210 LEU PRO GLN MET VAL GLN GLN LEU ASN SER PRO ASP GLN SEQRES 3 A 210 GLN GLU LEU GLN SER ALA LEU ARG LYS LEU SER GLN ILE SEQRES 4 A 210 ALA SER GLY GLY ASN GLU GLN ILE GLN ALA VAL ILE ASP SEQRES 5 A 210 ALA GLY ALA LEU PRO ALA LEU VAL GLN LEU LEU SER SER SEQRES 6 A 210 PRO ASN GLU GLN ILE LEU GLN GLU ALA LEU TRP ALA LEU SEQRES 7 A 210 SER ASN ILE ALA SER GLY GLY ASN GLU GLN ILE GLN ALA SEQRES 8 A 210 VAL ILE ASP ALA GLY ALA LEU PRO ALA LEU VAL GLN LEU SEQRES 9 A 210 LEU SER SER PRO ASN GLU GLN ILE LEU GLN GLU ALA LEU SEQRES 10 A 210 TRP ALA LEU SER ASN ILE ALA SER GLY GLY ASN GLU GLN SEQRES 11 A 210 ILE GLN ALA VAL ILE ASP ALA GLY ALA LEU PRO ALA LEU SEQRES 12 A 210 VAL GLN LEU LEU SER SER PRO ASN GLU GLN ILE LEU GLN SEQRES 13 A 210 GLU ALA LEU TRP ALA LEU SER ASN ILE ALA SER GLY GLY SEQRES 14 A 210 ASN GLU GLN LYS GLN ALA VAL LYS GLU ALA GLY ALA GLU SEQRES 15 A 210 PRO ALA LEU GLU GLN LEU GLN SER SER PRO ASN GLU LYS SEQRES 16 A 210 ILE GLN LYS GLU ALA GLN GLU ALA LEU GLU LYS ILE GLN SEQRES 17 A 210 SER HIS SEQRES 1 B 210 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER GLU SEQRES 2 B 210 LEU PRO GLN MET VAL GLN GLN LEU ASN SER PRO ASP GLN SEQRES 3 B 210 GLN GLU LEU GLN SER ALA LEU ARG LYS LEU SER GLN ILE SEQRES 4 B 210 ALA SER GLY GLY ASN GLU GLN ILE GLN ALA VAL ILE ASP SEQRES 5 B 210 ALA GLY ALA LEU PRO ALA LEU VAL GLN LEU LEU SER SER SEQRES 6 B 210 PRO ASN GLU GLN ILE LEU GLN GLU ALA LEU TRP ALA LEU SEQRES 7 B 210 SER ASN ILE ALA SER GLY GLY ASN GLU GLN ILE GLN ALA SEQRES 8 B 210 VAL ILE ASP ALA GLY ALA LEU PRO ALA LEU VAL GLN LEU SEQRES 9 B 210 LEU SER SER PRO ASN GLU GLN ILE LEU GLN GLU ALA LEU SEQRES 10 B 210 TRP ALA LEU SER ASN ILE ALA SER GLY GLY ASN GLU GLN SEQRES 11 B 210 ILE GLN ALA VAL ILE ASP ALA GLY ALA LEU PRO ALA LEU SEQRES 12 B 210 VAL GLN LEU LEU SER SER PRO ASN GLU GLN ILE LEU GLN SEQRES 13 B 210 GLU ALA LEU TRP ALA LEU SER ASN ILE ALA SER GLY GLY SEQRES 14 B 210 ASN GLU GLN LYS GLN ALA VAL LYS GLU ALA GLY ALA GLU SEQRES 15 B 210 PRO ALA LEU GLU GLN LEU GLN SER SER PRO ASN GLU LYS SEQRES 16 B 210 ILE GLN LYS GLU ALA GLN GLU ALA LEU GLU LYS ILE GLN SEQRES 17 B 210 SER HIS SEQRES 1 C 210 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER GLU SEQRES 2 C 210 LEU PRO GLN MET VAL GLN GLN LEU ASN SER PRO ASP GLN SEQRES 3 C 210 GLN GLU LEU GLN SER ALA LEU ARG LYS LEU SER GLN ILE SEQRES 4 C 210 ALA SER GLY GLY ASN GLU GLN ILE GLN ALA VAL ILE ASP SEQRES 5 C 210 ALA GLY ALA LEU PRO ALA LEU VAL GLN LEU LEU SER SER SEQRES 6 C 210 PRO ASN GLU GLN ILE LEU GLN GLU ALA LEU TRP ALA LEU SEQRES 7 C 210 SER ASN ILE ALA SER GLY GLY ASN GLU GLN ILE GLN ALA SEQRES 8 C 210 VAL ILE ASP ALA GLY ALA LEU PRO ALA LEU VAL GLN LEU SEQRES 9 C 210 LEU SER SER PRO ASN GLU GLN ILE LEU GLN GLU ALA LEU SEQRES 10 C 210 TRP ALA LEU SER ASN ILE ALA SER GLY GLY ASN GLU GLN SEQRES 11 C 210 ILE GLN ALA VAL ILE ASP ALA GLY ALA LEU PRO ALA LEU SEQRES 12 C 210 VAL GLN LEU LEU SER SER PRO ASN GLU GLN ILE LEU GLN SEQRES 13 C 210 GLU ALA LEU TRP ALA LEU SER ASN ILE ALA SER GLY GLY SEQRES 14 C 210 ASN GLU GLN LYS GLN ALA VAL LYS GLU ALA GLY ALA GLU SEQRES 15 C 210 PRO ALA LEU GLU GLN LEU GLN SER SER PRO ASN GLU LYS SEQRES 16 C 210 ILE GLN LYS GLU ALA GLN GLU ALA LEU GLU LYS ILE GLN SEQRES 17 C 210 SER HIS SEQRES 1 D 210 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER GLU SEQRES 2 D 210 LEU PRO GLN MET VAL GLN GLN LEU ASN SER PRO ASP GLN SEQRES 3 D 210 GLN GLU LEU GLN SER ALA LEU ARG LYS LEU SER GLN ILE SEQRES 4 D 210 ALA SER GLY GLY ASN GLU GLN ILE GLN ALA VAL ILE ASP SEQRES 5 D 210 ALA GLY ALA LEU PRO ALA LEU VAL GLN LEU LEU SER SER SEQRES 6 D 210 PRO ASN GLU GLN ILE LEU GLN GLU ALA LEU TRP ALA LEU SEQRES 7 D 210 SER ASN ILE ALA SER GLY GLY ASN GLU GLN ILE GLN ALA SEQRES 8 D 210 VAL ILE ASP ALA GLY ALA LEU PRO ALA LEU VAL GLN LEU SEQRES 9 D 210 LEU SER SER PRO ASN GLU GLN ILE LEU GLN GLU ALA LEU SEQRES 10 D 210 TRP ALA LEU SER ASN ILE ALA SER GLY GLY ASN GLU GLN SEQRES 11 D 210 ILE GLN ALA VAL ILE ASP ALA GLY ALA LEU PRO ALA LEU SEQRES 12 D 210 VAL GLN LEU LEU SER SER PRO ASN GLU GLN ILE LEU GLN SEQRES 13 D 210 GLU ALA LEU TRP ALA LEU SER ASN ILE ALA SER GLY GLY SEQRES 14 D 210 ASN GLU GLN LYS GLN ALA VAL LYS GLU ALA GLY ALA GLU SEQRES 15 D 210 PRO ALA LEU GLU GLN LEU GLN SER SER PRO ASN GLU LYS SEQRES 16 D 210 ILE GLN LYS GLU ALA GLN GLU ALA LEU GLU LYS ILE GLN SEQRES 17 D 210 SER HIS SEQRES 1 E 210 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER GLU SEQRES 2 E 210 LEU PRO GLN MET VAL GLN GLN LEU ASN SER PRO ASP GLN SEQRES 3 E 210 GLN GLU LEU GLN SER ALA LEU ARG LYS LEU SER GLN ILE SEQRES 4 E 210 ALA SER GLY GLY ASN GLU GLN ILE GLN ALA VAL ILE ASP SEQRES 5 E 210 ALA GLY ALA LEU PRO ALA LEU VAL GLN LEU LEU SER SER SEQRES 6 E 210 PRO ASN GLU GLN ILE LEU GLN GLU ALA LEU TRP ALA LEU SEQRES 7 E 210 SER ASN ILE ALA SER GLY GLY ASN GLU GLN ILE GLN ALA SEQRES 8 E 210 VAL ILE ASP ALA GLY ALA LEU PRO ALA LEU VAL GLN LEU SEQRES 9 E 210 LEU SER SER PRO ASN GLU GLN ILE LEU GLN GLU ALA LEU SEQRES 10 E 210 TRP ALA LEU SER ASN ILE ALA SER GLY GLY ASN GLU GLN SEQRES 11 E 210 ILE GLN ALA VAL ILE ASP ALA GLY ALA LEU PRO ALA LEU SEQRES 12 E 210 VAL GLN LEU LEU SER SER PRO ASN GLU GLN ILE LEU GLN SEQRES 13 E 210 GLU ALA LEU TRP ALA LEU SER ASN ILE ALA SER GLY GLY SEQRES 14 E 210 ASN GLU GLN LYS GLN ALA VAL LYS GLU ALA GLY ALA GLU SEQRES 15 E 210 PRO ALA LEU GLU GLN LEU GLN SER SER PRO ASN GLU LYS SEQRES 16 E 210 ILE GLN LYS GLU ALA GLN GLU ALA LEU GLU LYS ILE GLN SEQRES 17 E 210 SER HIS SEQRES 1 F 210 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER GLU SEQRES 2 F 210 LEU PRO GLN MET VAL GLN GLN LEU ASN SER PRO ASP GLN SEQRES 3 F 210 GLN GLU LEU GLN SER ALA LEU ARG LYS LEU SER GLN ILE SEQRES 4 F 210 ALA SER GLY GLY ASN GLU GLN ILE GLN ALA VAL ILE ASP SEQRES 5 F 210 ALA GLY ALA LEU PRO ALA LEU VAL GLN LEU LEU SER SER SEQRES 6 F 210 PRO ASN GLU GLN ILE LEU GLN GLU ALA LEU TRP ALA LEU SEQRES 7 F 210 SER ASN ILE ALA SER GLY GLY ASN GLU GLN ILE GLN ALA SEQRES 8 F 210 VAL ILE ASP ALA GLY ALA LEU PRO ALA LEU VAL GLN LEU SEQRES 9 F 210 LEU SER SER PRO ASN GLU GLN ILE LEU GLN GLU ALA LEU SEQRES 10 F 210 TRP ALA LEU SER ASN ILE ALA SER GLY GLY ASN GLU GLN SEQRES 11 F 210 ILE GLN ALA VAL ILE ASP ALA GLY ALA LEU PRO ALA LEU SEQRES 12 F 210 VAL GLN LEU LEU SER SER PRO ASN GLU GLN ILE LEU GLN SEQRES 13 F 210 GLU ALA LEU TRP ALA LEU SER ASN ILE ALA SER GLY GLY SEQRES 14 F 210 ASN GLU GLN LYS GLN ALA VAL LYS GLU ALA GLY ALA GLU SEQRES 15 F 210 PRO ALA LEU GLU GLN LEU GLN SER SER PRO ASN GLU LYS SEQRES 16 F 210 ILE GLN LYS GLU ALA GLN GLU ALA LEU GLU LYS ILE GLN SEQRES 17 F 210 SER HIS FORMUL 7 HOH *398(H2 O) HELIX 1 1 HIS A 9 SER A 11 5 3 HELIX 2 2 GLU A 12 GLN A 19 1 8 HELIX 3 3 LEU A 20 SER A 22 5 3 HELIX 4 4 ASP A 24 SER A 40 1 17 HELIX 5 5 GLY A 42 ALA A 52 1 11 HELIX 6 6 GLY A 53 LEU A 61 1 9 HELIX 7 7 LEU A 62 SER A 64 5 3 HELIX 8 8 ASN A 66 ALA A 81 1 16 HELIX 9 9 GLY A 84 ALA A 94 1 11 HELIX 10 10 GLY A 95 LEU A 104 1 10 HELIX 11 11 ASN A 108 ALA A 123 1 16 HELIX 12 12 GLY A 126 ALA A 136 1 11 HELIX 13 13 GLY A 137 LEU A 146 1 10 HELIX 14 14 ASN A 150 SER A 166 1 17 HELIX 15 15 GLY A 168 ALA A 178 1 11 HELIX 16 16 GLY A 179 GLN A 188 1 10 HELIX 17 17 ASN A 192 ILE A 206 1 15 HELIX 18 18 HIS B 9 SER B 11 5 3 HELIX 19 19 GLU B 12 GLN B 19 1 8 HELIX 20 20 LEU B 20 SER B 22 5 3 HELIX 21 21 ASP B 24 SER B 40 1 17 HELIX 22 22 GLY B 42 ALA B 52 1 11 HELIX 23 23 ALA B 54 LEU B 62 1 9 HELIX 24 24 ASN B 66 ALA B 81 1 16 HELIX 25 25 GLY B 84 ALA B 94 1 11 HELIX 26 26 GLY B 95 LEU B 104 1 10 HELIX 27 27 ASN B 108 ALA B 123 1 16 HELIX 28 28 GLY B 126 ALA B 136 1 11 HELIX 29 29 GLY B 137 LEU B 146 1 10 HELIX 30 30 ASN B 150 ALA B 165 1 16 HELIX 31 31 GLY B 168 ALA B 178 1 11 HELIX 32 32 GLY B 179 GLN B 188 1 10 HELIX 33 33 ASN B 192 ILE B 206 1 15 HELIX 34 34 HIS C 9 SER C 11 5 3 HELIX 35 35 GLU C 12 LEU C 20 1 9 HELIX 36 36 ASP C 24 SER C 40 1 17 HELIX 37 37 GLY C 41 ALA C 52 1 12 HELIX 38 38 ALA C 54 LEU C 62 1 9 HELIX 39 39 ASN C 66 ALA C 81 1 16 HELIX 40 40 GLY C 84 ALA C 94 1 11 HELIX 41 41 GLY C 95 LEU C 104 1 10 HELIX 42 42 ASN C 108 ALA C 123 1 16 HELIX 43 43 GLY C 126 ALA C 136 1 11 HELIX 44 44 GLY C 137 LEU C 146 1 10 HELIX 45 45 ASN C 150 SER C 166 1 17 HELIX 46 46 GLY C 168 ALA C 178 1 11 HELIX 47 47 GLY C 179 GLN C 188 1 10 HELIX 48 48 ASN C 192 ILE C 206 1 15 HELIX 49 49 HIS D 9 SER D 11 5 3 HELIX 50 50 GLU D 12 LEU D 20 1 9 HELIX 51 51 ASP D 24 SER D 40 1 17 HELIX 52 52 GLY D 42 ALA D 52 1 11 HELIX 53 53 GLY D 53 LEU D 62 1 10 HELIX 54 54 ASN D 66 ALA D 81 1 16 HELIX 55 55 GLY D 84 ALA D 94 1 11 HELIX 56 56 GLY D 95 LEU D 104 1 10 HELIX 57 57 ASN D 108 ALA D 123 1 16 HELIX 58 58 GLY D 126 ALA D 136 1 11 HELIX 59 59 GLY D 137 LEU D 146 1 10 HELIX 60 60 ASN D 150 SER D 166 1 17 HELIX 61 61 GLY D 168 ALA D 178 1 11 HELIX 62 62 GLY D 179 GLN D 188 1 10 HELIX 63 63 ASN D 192 ILE D 206 1 15 HELIX 64 64 HIS E 9 SER E 11 5 3 HELIX 65 65 GLU E 12 LEU E 20 1 9 HELIX 66 66 ASP E 24 SER E 40 1 17 HELIX 67 67 GLY E 42 ALA E 52 1 11 HELIX 68 68 ALA E 54 LEU E 62 1 9 HELIX 69 69 ASN E 66 ALA E 81 1 16 HELIX 70 70 GLY E 84 ALA E 94 1 11 HELIX 71 71 GLY E 95 LEU E 104 1 10 HELIX 72 72 ASN E 108 ALA E 123 1 16 HELIX 73 73 GLY E 126 ALA E 136 1 11 HELIX 74 74 GLY E 137 LEU E 146 1 10 HELIX 75 75 ASN E 150 SER E 166 1 17 HELIX 76 76 GLY E 168 ALA E 178 1 11 HELIX 77 77 GLY E 179 GLN E 188 1 10 HELIX 78 78 ASN E 192 ILE E 206 1 15 HELIX 79 79 HIS F 9 SER F 11 5 3 HELIX 80 80 GLU F 12 LEU F 20 1 9 HELIX 81 81 ASP F 24 SER F 40 1 17 HELIX 82 82 GLY F 42 ALA F 52 1 11 HELIX 83 83 GLY F 53 LEU F 62 1 10 HELIX 84 84 ASN F 66 ALA F 81 1 16 HELIX 85 85 GLY F 84 ALA F 94 1 11 HELIX 86 86 GLY F 95 LEU F 104 1 10 HELIX 87 87 ASN F 108 ALA F 123 1 16 HELIX 88 88 GLY F 126 ALA F 136 1 11 HELIX 89 89 GLY F 137 LEU F 146 1 10 HELIX 90 90 ASN F 150 SER F 166 1 17 HELIX 91 91 GLY F 168 ALA F 178 1 11 HELIX 92 92 GLY F 179 GLN F 186 1 8 HELIX 93 93 ASN F 192 ILE F 206 1 15 CRYST1 131.920 228.880 116.530 90.00 90.00 90.00 C 2 2 21 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007580 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004369 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008581 0.00000