HEADER ISOMERASE 15-JAN-12 4DBF TITLE CRYSTAL STRUCTURES OF CG1458 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-HYDROXYHEPTA-2,4-DIENE-1,7-DIOATE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 2-KETO-4-PENTENOATE HYDRATASE/2-OXOHEPTA-3-ENE-1,7-DIOIC COMPND 5 ACID HYDRATASE (CATECHOL PATHWAY); COMPND 6 EC: 5.3.3.-, 4.1.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM GLUTAMICUM; SOURCE 3 ORGANISM_TAXID: 1718; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXALOACETATE DECARBOXYLASE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.T.RAN,D.Q.XU,W.W.WANG,Y.Y.GAO,M.T.WANG REVDAT 3 08-NOV-23 4DBF 1 REMARK LINK REVDAT 2 04-DEC-19 4DBF 1 REMARK SEQADV REVDAT 1 28-NOV-12 4DBF 0 JRNL AUTH T.RAN,Y.GAO,M.MARSH,W.ZHU,M.WANG,X.MAO,L.XU,D.XU,W.WANG JRNL TITL CRYSTAL STRUCTURES OF CG1458 REVEAL A CATALYTIC LID DOMAIN JRNL TITL 2 AND A COMMON CATALYTIC MECHANISM FOR FAH FAMILY. JRNL REF BIOCHEM.J. V. 449 51 2013 JRNL REFN ISSN 0264-6021 JRNL PMID 23046410 JRNL DOI 10.1042/BJ20120913 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 42829 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2288 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3115 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 162 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3903 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 222 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : 0.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.150 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.147 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.104 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.489 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4007 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5451 ; 2.010 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 517 ; 8.074 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 158 ;39.174 ;25.063 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 677 ;14.236 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;23.643 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 622 ; 0.146 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3023 ; 0.011 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2579 ; 1.259 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4193 ; 2.083 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1428 ; 3.122 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1256 ; 4.991 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 268 4 REMARK 3 1 B 1 B 268 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1922 ; 0.51 ; 0.50 REMARK 3 MEDIUM THERMAL 1 B (A**2): 1922 ; 2.05 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4DBF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000070119. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-DEC-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SSRF REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS PACKAGE REMARK 200 DATA SCALING SOFTWARE : XDS PACKAGE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45001 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 87.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2DFU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGCL2, 0.1M BIS-TRIS PH 6.0, 25% REMARK 280 W/V POLYETHYLENE GLYCOL 3350 , VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.82000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 62.06000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 62.06000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 55.23000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 62.06000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 62.06000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 18.41000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 62.06000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.06000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 55.23000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 62.06000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.06000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 18.41000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 36.82000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 73 REMARK 465 VAL A 74 REMARK 465 ALA A 75 REMARK 465 GLU A 76 REMARK 465 VAL A 77 REMARK 465 PHE A 78 REMARK 465 LYS A 79 REMARK 465 LYS A 80 REMARK 465 SER A 81 REMARK 465 ALA A 82 REMARK 465 GLU A 83 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 ASP B 72 REMARK 465 HIS B 73 REMARK 465 VAL B 74 REMARK 465 ALA B 75 REMARK 465 GLU B 76 REMARK 465 VAL B 77 REMARK 465 PHE B 78 REMARK 465 LYS B 79 REMARK 465 LYS B 80 REMARK 465 SER B 81 REMARK 465 ALA B 82 REMARK 465 GLU B 83 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS B 0 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 33 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO B 40 CD PRO B 40 N 0.156 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 101 -5.67 69.35 REMARK 500 ASN A 187 73.14 -160.65 REMARK 500 ASP A 205 79.63 -151.54 REMARK 500 THR A 242 -89.21 -117.46 REMARK 500 GLU B 20 -76.93 -79.27 REMARK 500 GLU B 101 -8.15 66.93 REMARK 500 ASN B 187 76.72 -156.67 REMARK 500 SER B 206 -169.16 -122.54 REMARK 500 THR B 242 -92.57 -116.45 REMARK 500 ILE B 258 -70.36 -116.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 10 OD1 REMARK 620 2 HOH A 508 O 85.4 REMARK 620 3 HOH A 509 O 173.9 90.7 REMARK 620 4 HOH A 510 O 94.2 171.0 88.9 REMARK 620 5 HOH A 511 O 87.9 89.6 87.4 81.4 REMARK 620 6 HOH A 576 O 99.2 89.8 85.5 99.2 172.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 116 OE1 REMARK 620 2 GLU A 118 OE2 90.9 REMARK 620 3 ASP A 147 OD2 84.2 95.5 REMARK 620 4 HOH A 501 O 86.2 85.0 170.4 REMARK 620 5 HOH A 502 O 172.9 84.5 90.9 98.7 REMARK 620 6 HOH A 503 O 97.8 167.8 93.8 87.1 87.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 116 OE1 REMARK 620 2 GLU B 118 OE2 90.5 REMARK 620 3 ASP B 147 OD2 83.6 103.3 REMARK 620 4 HOH B 501 O 79.5 86.9 160.3 REMARK 620 5 HOH B 502 O 177.9 88.9 98.5 98.5 REMARK 620 6 HOH B 503 O 95.7 166.0 89.8 82.0 84.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DBH RELATED DB: PDB DBREF 4DBF A 1 268 UNP Q8NQY2 Q8NQY2_CORGL 1 268 DBREF 4DBF B 1 268 UNP Q8NQY2 Q8NQY2_CORGL 1 268 SEQADV 4DBF MET A -19 UNP Q8NQY2 EXPRESSION TAG SEQADV 4DBF GLY A -18 UNP Q8NQY2 EXPRESSION TAG SEQADV 4DBF SER A -17 UNP Q8NQY2 EXPRESSION TAG SEQADV 4DBF SER A -16 UNP Q8NQY2 EXPRESSION TAG SEQADV 4DBF HIS A -15 UNP Q8NQY2 EXPRESSION TAG SEQADV 4DBF HIS A -14 UNP Q8NQY2 EXPRESSION TAG SEQADV 4DBF HIS A -13 UNP Q8NQY2 EXPRESSION TAG SEQADV 4DBF HIS A -12 UNP Q8NQY2 EXPRESSION TAG SEQADV 4DBF HIS A -11 UNP Q8NQY2 EXPRESSION TAG SEQADV 4DBF HIS A -10 UNP Q8NQY2 EXPRESSION TAG SEQADV 4DBF SER A -9 UNP Q8NQY2 EXPRESSION TAG SEQADV 4DBF SER A -8 UNP Q8NQY2 EXPRESSION TAG SEQADV 4DBF GLY A -7 UNP Q8NQY2 EXPRESSION TAG SEQADV 4DBF LEU A -6 UNP Q8NQY2 EXPRESSION TAG SEQADV 4DBF VAL A -5 UNP Q8NQY2 EXPRESSION TAG SEQADV 4DBF PRO A -4 UNP Q8NQY2 EXPRESSION TAG SEQADV 4DBF ARG A -3 UNP Q8NQY2 EXPRESSION TAG SEQADV 4DBF GLY A -2 UNP Q8NQY2 EXPRESSION TAG SEQADV 4DBF SER A -1 UNP Q8NQY2 EXPRESSION TAG SEQADV 4DBF HIS A 0 UNP Q8NQY2 EXPRESSION TAG SEQADV 4DBF MET B -19 UNP Q8NQY2 EXPRESSION TAG SEQADV 4DBF GLY B -18 UNP Q8NQY2 EXPRESSION TAG SEQADV 4DBF SER B -17 UNP Q8NQY2 EXPRESSION TAG SEQADV 4DBF SER B -16 UNP Q8NQY2 EXPRESSION TAG SEQADV 4DBF HIS B -15 UNP Q8NQY2 EXPRESSION TAG SEQADV 4DBF HIS B -14 UNP Q8NQY2 EXPRESSION TAG SEQADV 4DBF HIS B -13 UNP Q8NQY2 EXPRESSION TAG SEQADV 4DBF HIS B -12 UNP Q8NQY2 EXPRESSION TAG SEQADV 4DBF HIS B -11 UNP Q8NQY2 EXPRESSION TAG SEQADV 4DBF HIS B -10 UNP Q8NQY2 EXPRESSION TAG SEQADV 4DBF SER B -9 UNP Q8NQY2 EXPRESSION TAG SEQADV 4DBF SER B -8 UNP Q8NQY2 EXPRESSION TAG SEQADV 4DBF GLY B -7 UNP Q8NQY2 EXPRESSION TAG SEQADV 4DBF LEU B -6 UNP Q8NQY2 EXPRESSION TAG SEQADV 4DBF VAL B -5 UNP Q8NQY2 EXPRESSION TAG SEQADV 4DBF PRO B -4 UNP Q8NQY2 EXPRESSION TAG SEQADV 4DBF ARG B -3 UNP Q8NQY2 EXPRESSION TAG SEQADV 4DBF GLY B -2 UNP Q8NQY2 EXPRESSION TAG SEQADV 4DBF SER B -1 UNP Q8NQY2 EXPRESSION TAG SEQADV 4DBF HIS B 0 UNP Q8NQY2 EXPRESSION TAG SEQRES 1 A 288 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 288 LEU VAL PRO ARG GLY SER HIS MET ARG PHE GLY ARG ILE SEQRES 3 A 288 ALA THR PRO ASP GLY MET CYS PHE CYS SER ILE GLU GLY SEQRES 4 A 288 GLU GLY ASP ASP VAL ALA ASN LEU THR ALA ARG GLU ILE SEQRES 5 A 288 GLU GLY THR PRO PHE THR GLU PRO LYS PHE THR GLY ARG SEQRES 6 A 288 GLU TRP PRO LEU LYS ASP VAL ARG LEU LEU ALA PRO MET SEQRES 7 A 288 LEU PRO SER LYS VAL VAL ALA ILE GLY ARG ASN TYR ALA SEQRES 8 A 288 ASP HIS VAL ALA GLU VAL PHE LYS LYS SER ALA GLU SER SEQRES 9 A 288 LEU PRO PRO THR LEU PHE LEU LYS PRO PRO THR ALA VAL SEQRES 10 A 288 THR GLY PRO GLU SER PRO ILE ARG ILE PRO SER PHE ALA SEQRES 11 A 288 THR LYS VAL GLU PHE GLU GLY GLU LEU ALA VAL VAL ILE SEQRES 12 A 288 GLY LYS PRO CYS LYS ASN VAL LYS ALA ASP ASP TRP LYS SEQRES 13 A 288 SER VAL VAL LEU GLY PHE THR ILE ILE ASN ASP VAL SER SEQRES 14 A 288 SER ARG ASP LEU GLN PHE ALA ASP GLY GLN TRP ALA ARG SEQRES 15 A 288 ALA LYS GLY ILE ASP THR PHE GLY PRO ILE GLY PRO TRP SEQRES 16 A 288 ILE GLU THR ASP ILE ASN SER ILE ASP LEU ASP ASN LEU SEQRES 17 A 288 PRO ILE LYS ALA ARG LEU THR HIS ASP GLY GLU THR GLN SEQRES 18 A 288 LEU LYS GLN ASP SER ASN SER ASN GLN MET ILE MET LYS SEQRES 19 A 288 MET GLY GLU ILE ILE GLU PHE ILE THR ALA SER MET THR SEQRES 20 A 288 LEU LEU PRO GLY ASP VAL ILE ALA THR GLY SER PRO ALA SEQRES 21 A 288 GLY THR GLU ALA MET VAL ASP GLY ASP TYR ILE GLU ILE SEQRES 22 A 288 GLU ILE PRO GLY ILE GLY LYS LEU GLY ASN PRO VAL VAL SEQRES 23 A 288 ASP ALA SEQRES 1 B 288 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 288 LEU VAL PRO ARG GLY SER HIS MET ARG PHE GLY ARG ILE SEQRES 3 B 288 ALA THR PRO ASP GLY MET CYS PHE CYS SER ILE GLU GLY SEQRES 4 B 288 GLU GLY ASP ASP VAL ALA ASN LEU THR ALA ARG GLU ILE SEQRES 5 B 288 GLU GLY THR PRO PHE THR GLU PRO LYS PHE THR GLY ARG SEQRES 6 B 288 GLU TRP PRO LEU LYS ASP VAL ARG LEU LEU ALA PRO MET SEQRES 7 B 288 LEU PRO SER LYS VAL VAL ALA ILE GLY ARG ASN TYR ALA SEQRES 8 B 288 ASP HIS VAL ALA GLU VAL PHE LYS LYS SER ALA GLU SER SEQRES 9 B 288 LEU PRO PRO THR LEU PHE LEU LYS PRO PRO THR ALA VAL SEQRES 10 B 288 THR GLY PRO GLU SER PRO ILE ARG ILE PRO SER PHE ALA SEQRES 11 B 288 THR LYS VAL GLU PHE GLU GLY GLU LEU ALA VAL VAL ILE SEQRES 12 B 288 GLY LYS PRO CYS LYS ASN VAL LYS ALA ASP ASP TRP LYS SEQRES 13 B 288 SER VAL VAL LEU GLY PHE THR ILE ILE ASN ASP VAL SER SEQRES 14 B 288 SER ARG ASP LEU GLN PHE ALA ASP GLY GLN TRP ALA ARG SEQRES 15 B 288 ALA LYS GLY ILE ASP THR PHE GLY PRO ILE GLY PRO TRP SEQRES 16 B 288 ILE GLU THR ASP ILE ASN SER ILE ASP LEU ASP ASN LEU SEQRES 17 B 288 PRO ILE LYS ALA ARG LEU THR HIS ASP GLY GLU THR GLN SEQRES 18 B 288 LEU LYS GLN ASP SER ASN SER ASN GLN MET ILE MET LYS SEQRES 19 B 288 MET GLY GLU ILE ILE GLU PHE ILE THR ALA SER MET THR SEQRES 20 B 288 LEU LEU PRO GLY ASP VAL ILE ALA THR GLY SER PRO ALA SEQRES 21 B 288 GLY THR GLU ALA MET VAL ASP GLY ASP TYR ILE GLU ILE SEQRES 22 B 288 GLU ILE PRO GLY ILE GLY LYS LEU GLY ASN PRO VAL VAL SEQRES 23 B 288 ASP ALA HET MG A 401 1 HET MG A 402 1 HET MG B 401 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG 3(MG 2+) FORMUL 6 HOH *222(H2 O) HELIX 1 1 ASP A 23 ASN A 26 5 4 HELIX 2 2 LYS A 50 VAL A 52 5 3 HELIX 3 3 PRO A 93 THR A 95 5 3 HELIX 4 4 LYS A 131 SER A 137 5 7 HELIX 5 5 ARG A 151 GLY A 158 1 8 HELIX 6 6 TRP A 160 ILE A 166 1 7 HELIX 7 7 ASP A 179 ILE A 183 5 5 HELIX 8 8 ASN A 209 MET A 211 5 3 HELIX 9 9 LYS A 214 ALA A 224 1 11 HELIX 10 10 ASP B 23 ALA B 25 5 3 HELIX 11 11 LYS B 50 VAL B 52 5 3 HELIX 12 12 PRO B 93 THR B 95 5 3 HELIX 13 13 LYS B 131 SER B 137 5 7 HELIX 14 14 ARG B 151 GLY B 158 1 8 HELIX 15 15 TRP B 160 ILE B 166 1 7 HELIX 16 16 ASP B 179 ILE B 183 5 5 HELIX 17 17 ASN B 209 MET B 211 5 3 HELIX 18 18 LYS B 214 ALA B 224 1 11 SHEET 1 A10 PHE A 42 PRO A 48 0 SHEET 2 A10 THR A 28 ILE A 32 -1 N ALA A 29 O TRP A 47 SHEET 3 A10 GLY A 11 GLU A 18 -1 N GLU A 18 O THR A 28 SHEET 4 A10 ARG A 2 THR A 8 -1 N THR A 8 O GLY A 11 SHEET 5 A10 GLY A 170 GLU A 177 -1 O ILE A 176 N PHE A 3 SHEET 6 A10 VAL A 139 ASN A 146 -1 N PHE A 142 O GLU A 177 SHEET 7 A10 GLY A 117 ILE A 123 -1 N VAL A 122 O GLY A 141 SHEET 8 A10 VAL A 233 ALA A 235 -1 O ILE A 234 N VAL A 121 SHEET 9 A10 VAL A 63 GLY A 67 1 N VAL A 64 O VAL A 233 SHEET 10 A10 THR A 88 LYS A 92 -1 O THR A 88 N GLY A 67 SHEET 1 B 4 ARG A 53 LEU A 55 0 SHEET 2 B 4 ARG A 2 THR A 8 -1 N ARG A 5 O LEU A 55 SHEET 3 B 4 GLY A 170 GLU A 177 -1 O ILE A 176 N PHE A 3 SHEET 4 B 4 VAL A 97 THR A 98 1 N THR A 98 O ILE A 172 SHEET 1 C 5 ILE A 104 ILE A 106 0 SHEET 2 C 5 GLY A 259 ASP A 267 1 O VAL A 266 N ILE A 106 SHEET 3 C 5 TYR A 250 ILE A 255 -1 N ILE A 253 O LEU A 261 SHEET 4 C 5 PRO A 189 HIS A 196 -1 N LYS A 191 O GLU A 254 SHEET 5 C 5 GLU A 199 ASN A 207 -1 O GLU A 199 N HIS A 196 SHEET 1 D 2 VAL A 113 GLU A 114 0 SHEET 2 D 2 SER A 149 SER A 150 -1 O SER A 149 N GLU A 114 SHEET 1 E10 LYS B 41 PRO B 48 0 SHEET 2 E10 LEU B 27 GLU B 33 -1 N ALA B 29 O TRP B 47 SHEET 3 E10 GLY B 11 GLY B 19 -1 N GLU B 18 O THR B 28 SHEET 4 E10 ARG B 2 THR B 8 -1 N THR B 8 O GLY B 11 SHEET 5 E10 GLY B 170 GLU B 177 -1 O ILE B 176 N PHE B 3 SHEET 6 E10 VAL B 139 ASN B 146 -1 N PHE B 142 O GLU B 177 SHEET 7 E10 GLY B 117 ILE B 123 -1 N ALA B 120 O THR B 143 SHEET 8 E10 VAL B 233 ALA B 235 -1 O ILE B 234 N VAL B 121 SHEET 9 E10 VAL B 63 GLY B 67 1 N VAL B 64 O VAL B 233 SHEET 10 E10 THR B 88 LYS B 92 -1 O THR B 88 N GLY B 67 SHEET 1 F 6 LYS B 41 PRO B 48 0 SHEET 2 F 6 LEU B 27 GLU B 33 -1 N ALA B 29 O TRP B 47 SHEET 3 F 6 GLY B 11 GLY B 19 -1 N GLU B 18 O THR B 28 SHEET 4 F 6 ARG B 2 THR B 8 -1 N THR B 8 O GLY B 11 SHEET 5 F 6 GLY B 170 GLU B 177 -1 O ILE B 176 N PHE B 3 SHEET 6 F 6 VAL B 97 THR B 98 1 N THR B 98 O ILE B 172 SHEET 1 G 5 ILE B 104 ILE B 106 0 SHEET 2 G 5 GLY B 259 ASP B 267 1 O PRO B 264 N ILE B 104 SHEET 3 G 5 TYR B 250 ILE B 255 -1 N ILE B 253 O LEU B 261 SHEET 4 G 5 PRO B 189 HIS B 196 -1 N THR B 195 O TYR B 250 SHEET 5 G 5 GLU B 199 ASN B 207 -1 O SER B 206 N ILE B 190 SHEET 1 H 2 VAL B 113 GLU B 114 0 SHEET 2 H 2 SER B 149 SER B 150 -1 O SER B 149 N GLU B 114 LINK OD1 ASP A 10 MG MG A 402 1555 1555 1.92 LINK OE1 GLU A 116 MG MG A 401 1555 1555 2.16 LINK OE2 GLU A 118 MG MG A 401 1555 1555 2.14 LINK OD2 ASP A 147 MG MG A 401 1555 1555 2.21 LINK MG MG A 401 O HOH A 501 1555 1555 2.04 LINK MG MG A 401 O HOH A 502 1555 1555 2.16 LINK MG MG A 401 O HOH A 503 1555 1555 2.06 LINK MG MG A 402 O HOH A 508 1555 1555 2.07 LINK MG MG A 402 O HOH A 509 1555 1555 2.24 LINK MG MG A 402 O HOH A 510 1555 1555 2.24 LINK MG MG A 402 O HOH A 511 1555 1555 2.31 LINK MG MG A 402 O HOH A 576 1555 1555 2.01 LINK OE1 GLU B 116 MG MG B 401 1555 1555 2.07 LINK OE2 GLU B 118 MG MG B 401 1555 1555 2.00 LINK OD2 ASP B 147 MG MG B 401 1555 1555 2.04 LINK MG MG B 401 O HOH B 501 1555 1555 2.08 LINK MG MG B 401 O HOH B 502 1555 1555 2.18 LINK MG MG B 401 O HOH B 503 1555 1555 2.19 CISPEP 1 GLY A 173 PRO A 174 0 7.42 CISPEP 2 GLY B 173 PRO B 174 0 -1.14 SITE 1 AC1 7 GLU A 116 GLU A 118 ASP A 147 LYS A 164 SITE 2 AC1 7 HOH A 501 HOH A 502 HOH A 503 SITE 1 AC2 6 ASP A 10 HOH A 508 HOH A 509 HOH A 510 SITE 2 AC2 6 HOH A 511 HOH A 576 SITE 1 AC3 6 GLU B 116 GLU B 118 ASP B 147 HOH B 501 SITE 2 AC3 6 HOH B 502 HOH B 503 CRYST1 124.120 124.120 73.640 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008057 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008057 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013580 0.00000