HEADER LIGASE 15-JAN-12 4DBG TITLE CRYSTAL STRUCTURE OF HOIL-1L-UBL COMPLEXED WITH A HOIP-UBA DERIVATIVE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RANBP-TYPE AND C3HC4-TYPE ZINC FINGER-CONTAINING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UB-LIKE DOMAIN, RESIDUES 37-137; COMPND 5 SYNONYM: HBV-ASSOCIATED FACTOR 4, HEME-OXIDIZED IRP2 UBIQUITIN LIGASE COMPND 6 1, HOIL-1, HEPATITIS B VIRUS X-ASSOCIATED PROTEIN 4, RING FINGER COMPND 7 PROTEIN 54, UBIQUITIN-CONJUGATING ENZYME 7-INTERACTING PROTEIN 3; COMPND 8 EC: 6.3.2.-; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: RING FINGER PROTEIN 31; COMPND 12 CHAIN: B; COMPND 13 FRAGMENT: UB-ASSOCIATED DOMAIN, RESIDUES 480-636; COMPND 14 SYNONYM: HOIL-1-INTERACTING PROTEIN, HOIP, ZINC IN-BETWEEN-RING- COMPND 15 FINGER UBIQUITIN-ASSOCIATED DOMAIN PROTEIN; COMPND 16 EC: 6.3.2.-; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RBCK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-28A; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: RNF31; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PGEX6P-1 KEYWDS UBIQUITIN FOLD, UBIQUITINATION, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR H.YAGI,T.HIROMOTO,T.MIZUSHIMA,E.KURIMOTO,K.KATO REVDAT 3 16-MAY-12 4DBG 1 JRNL REVDAT 2 11-APR-12 4DBG 1 TITLE REVDAT 1 04-APR-12 4DBG 0 JRNL AUTH H.YAGI,K.ISHIMOTO,T.HIROMOTO,H.FUJITA,T.MIZUSHIMA,Y.UEKUSA, JRNL AUTH 2 M.YAGI-UTSUMI,E.KURIMOTO,M.NODA,S.UCHIYAMA,F.TOKUNAGA, JRNL AUTH 3 K.IWAI,K.KATO JRNL TITL A NON-CANONICAL UBA-UBL INTERACTION FORMS THE JRNL TITL 2 LINEAR-UBIQUITIN-CHAIN ASSEMBLY COMPLEX JRNL REF EMBO REP. V. 13 462 2012 JRNL REFN ISSN 1469-221X JRNL PMID 22430200 JRNL DOI 10.1038/EMBOR.2012.24 REMARK 2 REMARK 2 RESOLUTION. 2.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.19 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 10718 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 539 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.71 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.78 REMARK 3 REFLECTION IN BIN (WORKING SET) : 723 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 34 REMARK 3 BIN FREE R VALUE : 0.3910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1827 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 32 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.96000 REMARK 3 B22 (A**2) : 3.96000 REMARK 3 B33 (A**2) : -5.93000 REMARK 3 B12 (A**2) : 1.98000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.290 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.244 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 27.035 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1864 ; 0.018 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2523 ; 1.785 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 226 ; 6.865 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 99 ;35.063 ;23.636 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 321 ;21.140 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;24.327 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 271 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1443 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1130 ; 0.564 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1808 ; 1.163 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 734 ; 1.931 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 715 ; 3.431 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 52 A 133 REMARK 3 ORIGIN FOR THE GROUP (A): 42.5568 -15.3891 -23.2611 REMARK 3 T TENSOR REMARK 3 T11: 0.0302 T22: 0.1059 REMARK 3 T33: 0.0413 T12: 0.0376 REMARK 3 T13: -0.0294 T23: -0.0152 REMARK 3 L TENSOR REMARK 3 L11: 5.1010 L22: 8.7430 REMARK 3 L33: 5.5157 L12: -2.0319 REMARK 3 L13: -0.5998 L23: -2.4996 REMARK 3 S TENSOR REMARK 3 S11: -0.1926 S12: 0.0555 S13: 0.2244 REMARK 3 S21: 0.2321 S22: 0.1706 S23: -0.1702 REMARK 3 S31: -0.2016 S32: -0.1860 S33: 0.0220 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 482 B 528 REMARK 3 RESIDUE RANGE : B 529 B 627 REMARK 3 ORIGIN FOR THE GROUP (A): 36.6691 -18.2678 4.2382 REMARK 3 T TENSOR REMARK 3 T11: 0.1355 T22: 0.1214 REMARK 3 T33: 0.2502 T12: -0.0309 REMARK 3 T13: 0.0551 T23: 0.0297 REMARK 3 L TENSOR REMARK 3 L11: 1.5563 L22: 1.4072 REMARK 3 L33: 5.8102 L12: -0.7144 REMARK 3 L13: -1.0284 L23: -0.0203 REMARK 3 S TENSOR REMARK 3 S11: 0.1378 S12: 0.0234 S13: 0.1079 REMARK 3 S21: 0.0982 S22: -0.0162 S23: -0.0511 REMARK 3 S31: -0.3505 S32: -0.0675 S33: -0.1216 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4DBG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-JAN-12. REMARK 100 THE RCSB ID CODE IS RCSB070120. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-FEB-09; 22-JAN-11 REMARK 200 TEMPERATURE (KELVIN) : 100.0; 100.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SPRING-8; SPRING-8 REMARK 200 BEAMLINE : BL44XU; BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9000; 0.9791, 0.9794, 0.9642 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL MONOCHROMATOR; REMARK 200 DOUBLE-CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : HORIZONTAL FOCUSING MIRROR; REMARK 200 HORIZONTAL FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER DIP-6040; BRUKER DIP-6040 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20666 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 300.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.33200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: BIJVOET PAIRS WERE COLLECTED SEPARATELY IN THE NATIVE DATA REMARK 200 SET. THE AVERAGED REFLECTIONS WERE USED FOR STRUCTURE REFINEMENT. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15%(W/V) PEG6000, 0.1M KCL, 0.1M HEPES REMARK 280 -NA BUFFER, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.76367 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 107.52733 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 107.52733 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 53.76367 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 33 REMARK 465 SER A 34 REMARK 465 HIS A 35 REMARK 465 MET A 36 REMARK 465 GLN A 37 REMARK 465 ARG A 38 REMARK 465 VAL A 39 REMARK 465 PRO A 40 REMARK 465 LEU A 41 REMARK 465 SER A 42 REMARK 465 VAL A 43 REMARK 465 GLN A 44 REMARK 465 LEU A 45 REMARK 465 LYS A 46 REMARK 465 PRO A 47 REMARK 465 GLU A 48 REMARK 465 VAL A 49 REMARK 465 SER A 50 REMARK 465 PRO A 51 REMARK 465 ARG A 134 REMARK 465 ASN A 135 REMARK 465 THR A 136 REMARK 465 SER A 137 REMARK 465 GLY B 475 REMARK 465 PRO B 476 REMARK 465 LEU B 477 REMARK 465 GLY B 478 REMARK 465 SER B 479 REMARK 465 ARG B 480 REMARK 465 GLN B 481 REMARK 465 GLY B 628 REMARK 465 PRO B 629 REMARK 465 GLU B 630 REMARK 465 PRO B 631 REMARK 465 THR B 632 REMARK 465 PRO B 633 REMARK 465 SER B 634 REMARK 465 TRP B 635 REMARK 465 ASP B 636 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 576 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 64 -27.59 -35.88 REMARK 500 GLN A 65 -45.88 -137.79 REMARK 500 MET A 66 -143.05 -67.76 REMARK 500 ARG A 120 -27.59 -158.79 REMARK 500 MET B 494 12.63 -68.37 REMARK 500 GLU B 497 99.46 -34.34 REMARK 500 ALA B 501 171.07 175.59 REMARK 500 THR B 517 -151.91 -113.96 REMARK 500 GLU B 518 141.96 -176.04 REMARK 500 VAL B 531 -62.23 -28.61 REMARK 500 SER B 594 -61.90 -29.55 REMARK 500 ASP B 626 -85.27 -51.79 REMARK 500 REMARK 500 REMARK: NULL DBREF 4DBG A 37 137 UNP Q9BYM8 HOIL1_HUMAN 37 137 DBREF 4DBG B 480 636 UNP Q96EP0 RNF31_HUMAN 480 636 SEQADV 4DBG GLY A 33 UNP Q9BYM8 EXPRESSION TAG SEQADV 4DBG SER A 34 UNP Q9BYM8 EXPRESSION TAG SEQADV 4DBG HIS A 35 UNP Q9BYM8 EXPRESSION TAG SEQADV 4DBG MET A 36 UNP Q9BYM8 EXPRESSION TAG SEQADV 4DBG GLY B 475 UNP Q96EP0 EXPRESSION TAG SEQADV 4DBG PRO B 476 UNP Q96EP0 EXPRESSION TAG SEQADV 4DBG LEU B 477 UNP Q96EP0 EXPRESSION TAG SEQADV 4DBG GLY B 478 UNP Q96EP0 EXPRESSION TAG SEQADV 4DBG SER B 479 UNP Q96EP0 EXPRESSION TAG SEQRES 1 A 105 GLY SER HIS MET GLN ARG VAL PRO LEU SER VAL GLN LEU SEQRES 2 A 105 LYS PRO GLU VAL SER PRO THR GLN ASP ILE ARG LEU TRP SEQRES 3 A 105 VAL SER VAL GLU ASP ALA GLN MET HIS THR VAL THR ILE SEQRES 4 A 105 TRP LEU THR VAL ARG PRO ASP MET THR VAL ALA SER LEU SEQRES 5 A 105 LYS ASP MET VAL PHE LEU ASP TYR GLY PHE PRO PRO VAL SEQRES 6 A 105 LEU GLN GLN TRP VAL ILE GLY GLN ARG LEU ALA ARG ASP SEQRES 7 A 105 GLN GLU THR LEU HIS SER HIS GLY VAL ARG GLN ASN GLY SEQRES 8 A 105 ASP SER ALA TYR LEU TYR LEU LEU SER ALA ARG ASN THR SEQRES 9 A 105 SER SEQRES 1 B 162 GLY PRO LEU GLY SER ARG GLN ASP LYS MET ARG GLU GLU SEQRES 2 B 162 GLY LEU GLN LEU VAL SER MET ILE ARG GLU GLY GLU ALA SEQRES 3 B 162 ALA GLY ALA CYS PRO GLU GLU ILE PHE SER ALA LEU GLN SEQRES 4 B 162 TYR SER GLY THR GLU VAL PRO LEU GLN TRP LEU ARG SER SEQRES 5 B 162 GLU LEU PRO TYR VAL LEU GLU MET VAL ALA GLU LEU ALA SEQRES 6 B 162 GLY GLN GLN ASP PRO GLY LEU GLY ALA PHE SER CYS GLN SEQRES 7 B 162 GLU ALA ARG ARG ALA TRP LEU ASP ARG HIS GLY ASN LEU SEQRES 8 B 162 ASP GLU ALA VAL GLU GLU CYS VAL ARG THR ARG ARG ARG SEQRES 9 B 162 LYS VAL GLN GLU LEU GLN SER LEU GLY PHE GLY PRO GLU SEQRES 10 B 162 GLU GLY SER LEU GLN ALA LEU PHE GLN HIS GLY GLY ASP SEQRES 11 B 162 VAL SER ARG ALA LEU THR GLU LEU GLN ARG GLN ARG LEU SEQRES 12 B 162 GLU PRO PHE ARG GLN ARG LEU TRP ASP SER GLY PRO GLU SEQRES 13 B 162 PRO THR PRO SER TRP ASP FORMUL 3 HOH *32(H2 O) HELIX 1 1 THR A 80 GLY A 93 1 14 HELIX 2 2 PRO A 95 VAL A 97 5 3 HELIX 3 3 LEU A 114 GLY A 118 5 5 HELIX 4 4 LYS B 483 MET B 494 1 12 HELIX 5 5 CYS B 504 GLY B 516 1 13 HELIX 6 6 PRO B 520 LEU B 528 1 9 HELIX 7 7 TYR B 530 ASP B 543 1 14 HELIX 8 8 PRO B 544 GLY B 547 5 4 HELIX 9 9 SER B 550 ARG B 561 1 12 HELIX 10 10 ASN B 564 LEU B 586 1 23 HELIX 11 11 GLY B 589 GLU B 592 5 4 HELIX 12 12 GLY B 593 HIS B 601 1 9 HELIX 13 13 ASP B 604 LEU B 617 1 14 HELIX 14 14 LEU B 617 ASP B 626 1 10 SHEET 1 A 5 VAL A 69 VAL A 75 0 SHEET 2 A 5 ILE A 55 ASP A 63 -1 N LEU A 57 O LEU A 73 SHEET 3 A 5 SER A 125 LEU A 130 1 O LEU A 128 N SER A 60 SHEET 4 A 5 GLN A 99 ILE A 103 -1 N GLN A 100 O TYR A 129 SHEET 5 A 5 ARG A 106 ALA A 108 -1 O ARG A 106 N ILE A 103 SSBOND 1 CYS B 504 CYS B 551 1555 1555 2.06 CRYST1 64.973 64.973 161.291 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015391 0.008886 0.000000 0.00000 SCALE2 0.000000 0.017772 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006200 0.00000