HEADER MOTOR PROTEIN, CALCIUM BINDING PROTEIN 16-JAN-12 4DBQ TITLE MYOSIN VI D179Y (MD-INSERT2-CAM, DELTA-INSERT1) POST-RIGOR STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOSIN-VI; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MOTOR DOMAIN-INSERT2, UNP F1RQI7 RESIDUES 2-277, 304-815; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CALMODULIN; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: CAM; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIGS,SWINE,WILD BOAR; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 GENE: MYO6; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 10 ORGANISM_COMMON: FRUIT FLY; SOURCE 11 ORGANISM_TAXID: 7227; SOURCE 12 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS MOTOR PROTEIN, CALCIUM BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR O.PYLYPENKO,H.L.SWEENEY,A.HOUDUSSE REVDAT 3 28-FEB-24 4DBQ 1 REMARK SEQADV LINK REVDAT 2 23-AUG-17 4DBQ 1 SOURCE REMARK REVDAT 1 30-JAN-13 4DBQ 0 JRNL AUTH L.SONG,O.PYLYPENKO,Z.YANG,A.HOUDUSSE,L.H.SWEENEY JRNL TITL MUTATIONS IN MYOSIN VI THAT CAUSE A LOSS OF COORDINATION JRNL TITL 2 BETWEEN HEADS PROVIDE INSIGHTS INTO THE STRUCTURAL CHANGES JRNL TITL 3 UNDERLYING FORCE GENERATION AND THE IMPORTANCE OF GATING JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 44524 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2227 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9750 - 5.5650 1.00 4433 234 0.1512 0.2024 REMARK 3 2 5.5650 - 4.4330 1.00 4315 227 0.1400 0.1891 REMARK 3 3 4.4330 - 3.8773 1.00 4225 222 0.1365 0.1727 REMARK 3 4 3.8773 - 3.5249 1.00 4222 223 0.1678 0.2208 REMARK 3 5 3.5249 - 3.2734 1.00 4201 221 0.1789 0.2419 REMARK 3 6 3.2734 - 3.0811 1.00 4187 220 0.1881 0.2379 REMARK 3 7 3.0811 - 2.9273 1.00 4202 221 0.2116 0.2884 REMARK 3 8 2.9273 - 2.8003 1.00 4181 220 0.2256 0.3121 REMARK 3 9 2.8003 - 2.6927 1.00 4161 219 0.2314 0.2799 REMARK 3 10 2.6927 - 2.6000 1.00 4170 220 0.2571 0.3256 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.30 REMARK 3 B_SOL : 52.73 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 7337 REMARK 3 ANGLE : 1.095 9904 REMARK 3 CHIRALITY : 0.070 1078 REMARK 3 PLANARITY : 0.004 1290 REMARK 3 DIHEDRAL : 15.476 2727 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4DBQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000070130. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.980100 REMARK 200 MONOCHROMATOR : SI III REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44526 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 19.975 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM TRIS PH 8.5, 10% P8K, 1 MM TCEP, REMARK 280 6% MPD, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.65500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.97500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.94000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 89.97500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.65500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.94000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -140.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 2 REMARK 465 ASP A 3 REMARK 465 GLY A 303 REMARK 465 GLY A 304 REMARK 465 SER A 305 REMARK 465 LEU A 306 REMARK 465 LYS A 307 REMARK 465 GLU A 353 REMARK 465 GLU A 354 REMARK 465 ALA A 355 REMARK 465 GLY A 356 REMARK 465 SER A 357 REMARK 465 THR A 358 REMARK 465 SER A 359 REMARK 465 GLY A 360 REMARK 465 GLY A 361 REMARK 465 LEU A 396 REMARK 465 THR A 397 REMARK 465 THR A 398 REMARK 465 ALA A 399 REMARK 465 GLY A 400 REMARK 465 GLY A 401 REMARK 465 ALA A 402 REMARK 465 LYS A 403 REMARK 465 GLY A 404 REMARK 465 THR A 405 REMARK 465 VAL A 406 REMARK 465 ILE A 407 REMARK 465 LYS A 408 REMARK 465 SER A 624 REMARK 465 THR A 625 REMARK 465 ASN A 626 REMARK 465 ASN A 627 REMARK 465 ASN A 628 REMARK 465 LYS A 629 REMARK 465 ASP A 630 REMARK 465 THR A 631 REMARK 465 LYS A 632 REMARK 465 GLN A 633 REMARK 465 LYS A 634 REMARK 465 ALA A 635 REMARK 465 GLY A 636 REMARK 465 LYS A 637 REMARK 465 GLU A 815 REMARK 465 MET B 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 139 CE NZ REMARK 470 LYS A 142 CE NZ REMARK 470 GLU A 257 CB CG CD OE1 OE2 REMARK 470 GLU A 261 CB CG CD OE1 OE2 REMARK 470 ASN A 275 CG OD1 ND2 REMARK 470 ASP A 308 CG OD1 OD2 REMARK 470 CYS A 362 SG REMARK 470 MET A 395 CG SD CE REMARK 470 VAL A 409 CG1 CG2 REMARK 470 LYS A 412 CG CD CE NZ REMARK 470 VAL A 413 CG1 CG2 REMARK 470 VAL A 509 CG1 CG2 REMARK 470 GLN A 549 CG CD OE1 NE2 REMARK 470 MET A 603 CG SD CE REMARK 470 GLU A 611 CB CG CD OE1 OE2 REMARK 470 GLU A 622 CG CD OE1 OE2 REMARK 470 SER A 623 OG REMARK 470 SER A 639 OG REMARK 470 LYS A 674 CD CE NZ REMARK 470 GLU B 6 CG CD OE1 OE2 REMARK 470 GLU B 7 CG CD OE1 OE2 REMARK 470 LYS B 30 CD CE NZ REMARK 470 LYS B 75 CG CD CE NZ REMARK 470 LYS B 77 CG CD CE NZ REMARK 470 LYS B 94 CG CD CE NZ REMARK 470 THR B 110 CG2 REMARK 470 GLU B 139 CD OE1 OE2 REMARK 470 THR B 143 OG1 CG2 REMARK 470 LYS B 148 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 91 -114.12 48.89 REMARK 500 LYS A 105 -34.57 78.08 REMARK 500 SER A 266 -163.20 -127.38 REMARK 500 LYS A 365 -174.40 -61.92 REMARK 500 LYS A 412 -169.78 -68.21 REMARK 500 PHE A 443 57.91 -162.48 REMARK 500 PHE A 445 143.06 -178.49 REMARK 500 SER A 467 -162.36 -106.13 REMARK 500 LEU A 522 -41.56 72.31 REMARK 500 GLN A 592 -2.23 84.47 REMARK 500 GLU A 622 -16.72 -49.43 REMARK 500 SER A 772 -167.41 -73.75 REMARK 500 ASP A 773 108.83 -55.96 REMARK 500 ARG A 813 43.08 -100.31 REMARK 500 ASN B 42 63.63 -163.19 REMARK 500 ASP B 56 74.13 -65.46 REMARK 500 THR B 146 55.87 -118.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 903 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 158 OG1 REMARK 620 2 SER A 204 OG 81.3 REMARK 620 3 ADP A 901 O2B 88.1 167.1 REMARK 620 4 HOH A1001 O 86.5 91.9 80.1 REMARK 620 5 HOH A1002 O 92.1 92.3 95.4 175.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BEF A 902 BE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 901 O3B REMARK 620 2 BEF A 902 F1 104.6 REMARK 620 3 BEF A 902 F2 109.4 110.2 REMARK 620 4 BEF A 902 F3 114.5 109.1 108.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 20 OD1 REMARK 620 2 ASP B 22 OD2 63.5 REMARK 620 3 ASP B 22 OD1 111.7 49.4 REMARK 620 4 ASP B 24 OD2 62.1 71.1 102.4 REMARK 620 5 ASP B 24 OD1 100.9 68.1 67.5 44.7 REMARK 620 6 THR B 26 O 75.2 133.9 168.4 72.1 102.5 REMARK 620 7 GLU B 31 OE1 97.4 115.1 99.3 154.6 160.4 88.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 56 OD1 REMARK 620 2 ASP B 58 OD1 58.2 REMARK 620 3 ASN B 60 OD1 49.3 50.2 REMARK 620 4 THR B 62 O 76.1 112.9 63.0 REMARK 620 5 GLU B 67 OE1 131.3 148.5 161.3 98.5 REMARK 620 6 HOH B 327 O 153.8 108.4 104.6 91.4 72.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 93 OD1 REMARK 620 2 ASP B 95 OD1 78.0 REMARK 620 3 ASN B 97 OD1 79.5 79.3 REMARK 620 4 PHE B 99 O 83.6 151.2 75.7 REMARK 620 5 GLU B 104 OE1 99.9 80.2 159.1 125.2 REMARK 620 6 GLU B 104 OE2 100.3 129.1 151.2 75.7 49.6 REMARK 620 7 HOH B 305 O 163.8 102.2 84.6 89.5 96.0 92.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 204 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 129 OD2 REMARK 620 2 ASP B 131 OD1 75.4 REMARK 620 3 ASP B 133 OD1 83.1 78.2 REMARK 620 4 GLN B 135 O 83.5 151.2 80.0 REMARK 620 5 GLU B 140 OE1 112.3 122.9 155.7 83.1 REMARK 620 6 GLU B 140 OE2 90.7 75.8 154.0 124.5 48.7 REMARK 620 7 HOH B 323 O 162.5 93.6 81.3 101.5 85.1 99.9 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEF A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 205 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DBP RELATED DB: PDB REMARK 900 RELATED ID: 4DBR RELATED DB: PDB DBREF 4DBQ A 2 303 UNP F1RQI7 F1RQI7_PIG 2 277 DBREF 4DBQ A 304 815 UNP F1RQI7 F1RQI7_PIG 304 815 DBREF 4DBQ B 0 148 UNP P62152 CALM_DROME 1 149 SEQADV 4DBQ TYR A 179 UNP F1RQI7 ASP 179 ENGINEERED MUTATION SEQRES 1 A 788 GLU ASP GLY LYS PRO VAL TRP ALA PRO HIS PRO THR ASP SEQRES 2 A 788 GLY PHE GLN VAL GLY ASN ILE VAL ASP ILE GLY PRO ASP SEQRES 3 A 788 SER LEU THR ILE GLU PRO LEU ASN GLN LYS GLY LYS THR SEQRES 4 A 788 PHE LEU ALA LEU ILE ASN GLN VAL PHE PRO ALA GLU GLU SEQRES 5 A 788 ASP SER LYS LYS ASP VAL GLU ASP ASN CYS SER LEU MET SEQRES 6 A 788 TYR LEU ASN GLU ALA THR LEU LEU HIS ASN ILE LYS VAL SEQRES 7 A 788 ARG TYR SER LYS ASP ARG ILE TYR THR TYR VAL ALA ASN SEQRES 8 A 788 ILE LEU ILE ALA VAL ASN PRO TYR PHE ASP ILE PRO LYS SEQRES 9 A 788 ILE TYR SER SER GLU THR ILE LYS SER TYR GLN GLY LYS SEQRES 10 A 788 SER LEU GLY THR MET PRO PRO HIS VAL PHE ALA ILE ALA SEQRES 11 A 788 ASP LYS ALA PHE ARG ASP MET LYS VAL LEU LYS LEU SER SEQRES 12 A 788 GLN SER ILE ILE VAL SER GLY GLU SER GLY ALA GLY LYS SEQRES 13 A 788 THR GLU ASN THR LYS PHE VAL LEU ARG TYR LEU THR GLU SEQRES 14 A 788 SER TYR GLY THR GLY GLN ASP ILE TYR ASP ARG ILE VAL SEQRES 15 A 788 GLU ALA ASN PRO LEU LEU GLU ALA PHE GLY ASN ALA LYS SEQRES 16 A 788 THR VAL ARG ASN ASN ASN SER SER ARG PHE GLY LYS PHE SEQRES 17 A 788 VAL GLU ILE HIS PHE ASN GLU LYS SER SER VAL VAL GLY SEQRES 18 A 788 GLY PHE VAL SER HIS TYR LEU LEU GLU LYS SER ARG ILE SEQRES 19 A 788 CYS VAL GLN GLY LYS GLU GLU ARG ASN TYR HIS ILE PHE SEQRES 20 A 788 TYR ARG LEU CYS ALA GLY ALA SER GLU ASP ILE ARG GLU SEQRES 21 A 788 ARG LEU HIS LEU SER SER PRO ASP ASN PHE ARG TYR LEU SEQRES 22 A 788 ASN ARG GLY GLY SER LEU LYS ASP PRO LEU LEU ASP ASP SEQRES 23 A 788 HIS GLY ASP PHE ILE ARG MET CYS THR ALA MET LYS LYS SEQRES 24 A 788 ILE GLY LEU ASP ASP GLU GLU LYS LEU ASP LEU PHE ARG SEQRES 25 A 788 VAL VAL ALA GLY VAL LEU HIS LEU GLY ASN ILE ASP PHE SEQRES 26 A 788 GLU GLU ALA GLY SER THR SER GLY GLY CYS ASN LEU LYS SEQRES 27 A 788 ASN LYS SER THR GLN ALA LEU GLU TYR CYS ALA GLU LEU SEQRES 28 A 788 LEU GLY LEU ASP GLN ASP ASP LEU ARG VAL SER LEU THR SEQRES 29 A 788 THR ARG VAL MET LEU THR THR ALA GLY GLY ALA LYS GLY SEQRES 30 A 788 THR VAL ILE LYS VAL PRO LEU LYS VAL GLU GLN ALA ASN SEQRES 31 A 788 ASN ALA ARG ASP ALA LEU ALA LYS THR VAL TYR SER HIS SEQRES 32 A 788 LEU PHE ASP HIS VAL VAL ASN ARG VAL ASN GLN CYS PHE SEQRES 33 A 788 PRO PHE GLU THR SER SER TYR PHE ILE GLY VAL LEU ASP SEQRES 34 A 788 ILE ALA GLY PHE GLU TYR PHE GLU HIS ASN SER PHE GLU SEQRES 35 A 788 GLN PHE CYS ILE ASN TYR CYS ASN GLU LYS LEU GLN GLN SEQRES 36 A 788 PHE PHE ASN GLU ARG ILE LEU LYS GLU GLU GLN GLU LEU SEQRES 37 A 788 TYR GLN LYS GLU GLY LEU GLY VAL ASN GLU VAL HIS TYR SEQRES 38 A 788 VAL ASP ASN GLN ASP CYS ILE ASP LEU ILE GLU ALA ARG SEQRES 39 A 788 LEU VAL GLY ILE LEU ASP ILE LEU ASP GLU GLU ASN ARG SEQRES 40 A 788 LEU PRO GLN PRO SER ASP GLN HIS PHE THR SER ALA VAL SEQRES 41 A 788 HIS GLN LYS HIS LYS ASP HIS PHE ARG LEU SER ILE PRO SEQRES 42 A 788 ARG LYS SER LYS LEU ALA ILE HIS ARG ASN ILE ARG ASP SEQRES 43 A 788 ASP GLU GLY PHE ILE ILE ARG HIS PHE ALA GLY ALA VAL SEQRES 44 A 788 CYS TYR GLU THR THR GLN PHE VAL GLU LYS ASN ASN ASP SEQRES 45 A 788 ALA LEU HIS MET SER LEU GLU SER LEU ILE CYS GLU SER SEQRES 46 A 788 ARG ASP LYS PHE ILE ARG GLU LEU PHE GLU SER SER THR SEQRES 47 A 788 ASN ASN ASN LYS ASP THR LYS GLN LYS ALA GLY LYS LEU SEQRES 48 A 788 SER PHE ILE SER VAL GLY ASN LYS PHE LYS THR GLN LEU SEQRES 49 A 788 ASN LEU LEU LEU ASP LYS LEU ARG SER THR GLY ALA SER SEQRES 50 A 788 PHE ILE ARG CYS ILE LYS PRO ASN LEU LYS MET THR SER SEQRES 51 A 788 HIS HIS PHE GLU GLY ALA GLN ILE LEU SER GLN LEU GLN SEQRES 52 A 788 CYS SER GLY MET VAL SER VAL LEU ASP LEU MET GLN GLY SEQRES 53 A 788 GLY PHE PRO SER ARG ALA SER PHE HIS GLU LEU TYR ASN SEQRES 54 A 788 MET TYR LYS LYS TYR MET PRO ASP LYS LEU ALA ARG LEU SEQRES 55 A 788 ASP PRO ARG LEU PHE CYS LYS ALA LEU PHE LYS ALA LEU SEQRES 56 A 788 GLY LEU ASN GLU ILE ASP TYR LYS PHE GLY LEU THR LYS SEQRES 57 A 788 VAL PHE PHE ARG PRO GLY LYS PHE ALA GLU PHE ASP GLN SEQRES 58 A 788 ILE MET LYS SER ASP PRO ASP HIS LEU ALA GLU LEU VAL SEQRES 59 A 788 LYS ARG VAL ASN HIS TRP LEU ILE CYS SER ARG TRP LYS SEQRES 60 A 788 LYS VAL GLN TRP CYS SER LEU SER VAL ILE LYS LEU LYS SEQRES 61 A 788 ASN LYS ILE LYS TYR ARG ALA GLU SEQRES 1 B 149 MET ALA ASP GLN LEU THR GLU GLU GLN ILE ALA GLU PHE SEQRES 2 B 149 LYS GLU ALA PHE SER LEU PHE ASP LYS ASP GLY ASP GLY SEQRES 3 B 149 THR ILE THR THR LYS GLU LEU GLY THR VAL MET ARG SER SEQRES 4 B 149 LEU GLY GLN ASN PRO THR GLU ALA GLU LEU GLN ASP MET SEQRES 5 B 149 ILE ASN GLU VAL ASP ALA ASP GLY ASN GLY THR ILE ASP SEQRES 6 B 149 PHE PRO GLU PHE LEU THR MET MET ALA ARG LYS MET LYS SEQRES 7 B 149 ASP THR ASP SER GLU GLU GLU ILE ARG GLU ALA PHE ARG SEQRES 8 B 149 VAL PHE ASP LYS ASP GLY ASN GLY PHE ILE SER ALA ALA SEQRES 9 B 149 GLU LEU ARG HIS VAL MET THR ASN LEU GLY GLU LYS LEU SEQRES 10 B 149 THR ASP GLU GLU VAL ASP GLU MET ILE ARG GLU ALA ASP SEQRES 11 B 149 ILE ASP GLY ASP GLY GLN VAL ASN TYR GLU GLU PHE VAL SEQRES 12 B 149 THR MET MET THR SER LYS HET ADP A 901 27 HET BEF A 902 4 HET MG A 903 1 HET SO4 A 904 5 HET SO4 A 905 5 HET CA B 201 1 HET CA B 202 1 HET CA B 203 1 HET CA B 204 1 HET SO4 B 205 5 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM BEF BERYLLIUM TRIFLUORIDE ION HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETNAM CA CALCIUM ION FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 BEF BE F3 1- FORMUL 5 MG MG 2+ FORMUL 6 SO4 3(O4 S 2-) FORMUL 8 CA 4(CA 2+) FORMUL 13 HOH *392(H2 O) HELIX 1 1 ASN A 46 VAL A 48 5 3 HELIX 2 2 ASP A 61 LEU A 65 5 5 HELIX 3 3 ASN A 69 LYS A 83 1 15 HELIX 4 4 SER A 108 SER A 114 1 7 HELIX 5 5 HIS A 126 LYS A 142 1 17 HELIX 6 6 GLY A 156 GLY A 173 1 18 HELIX 7 7 ASP A 177 GLU A 184 1 8 HELIX 8 8 GLU A 184 GLY A 193 1 10 HELIX 9 9 LYS A 232 CYS A 236 5 5 HELIX 10 10 TYR A 245 ALA A 253 1 9 HELIX 11 11 ASP A 258 LEU A 263 1 6 HELIX 12 12 SER A 267 ASN A 270 5 4 HELIX 13 13 PHE A 271 ARG A 276 1 6 HELIX 14 14 ASP A 312 GLY A 328 1 17 HELIX 15 15 ASP A 330 GLY A 348 1 19 HELIX 16 16 LYS A 365 LEU A 379 1 15 HELIX 17 17 ASP A 382 THR A 392 1 11 HELIX 18 18 LYS A 412 GLN A 441 1 30 HELIX 19 19 SER A 467 GLU A 499 1 33 HELIX 20 20 ASN A 511 ALA A 520 1 10 HELIX 21 21 GLY A 524 LEU A 535 1 12 HELIX 22 22 SER A 539 HIS A 551 1 13 HELIX 23 23 ILE A 559 SER A 563 5 5 HELIX 24 24 LEU A 565 ASN A 570 1 6 HELIX 25 25 ARG A 572 ASP A 574 5 3 HELIX 26 26 GLN A 592 ASN A 597 1 6 HELIX 27 27 HIS A 602 GLU A 611 1 10 HELIX 28 28 ASP A 614 LEU A 620 1 7 HELIX 29 29 SER A 642 ARG A 659 1 18 HELIX 30 30 GLU A 681 SER A 692 1 12 HELIX 31 31 GLY A 693 GLY A 703 1 11 HELIX 32 32 PHE A 711 LYS A 719 1 9 HELIX 33 33 LYS A 720 MET A 722 5 3 HELIX 34 34 ASP A 730 GLY A 743 1 14 HELIX 35 35 GLY A 761 SER A 772 1 12 HELIX 36 36 ASP A 773 ARG A 783 1 11 HELIX 37 37 VAL A 784 ARG A 813 1 30 HELIX 38 38 THR B 5 ASP B 20 1 16 HELIX 39 39 THR B 28 LEU B 39 1 12 HELIX 40 40 THR B 44 GLU B 54 1 11 HELIX 41 41 PHE B 65 MET B 72 1 8 HELIX 42 42 LYS B 77 ASP B 93 1 17 HELIX 43 43 SER B 101 LEU B 112 1 12 HELIX 44 44 THR B 117 ASP B 129 1 13 HELIX 45 45 ASN B 137 THR B 146 1 10 SHEET 1 A 5 PHE A 41 LEU A 44 0 SHEET 2 A 5 SER A 28 PRO A 33 -1 N LEU A 29 O ALA A 43 SHEET 3 A 5 GLY A 15 ILE A 24 -1 N ASP A 23 O THR A 30 SHEET 4 A 5 VAL A 7 HIS A 11 -1 N VAL A 7 O GLY A 19 SHEET 5 A 5 PHE A 49 PRO A 50 -1 O PHE A 49 N TRP A 8 SHEET 1 B 7 TYR A 87 VAL A 90 0 SHEET 2 B 7 ILE A 93 VAL A 97 -1 O ILE A 95 N THR A 88 SHEET 3 B 7 GLY A 662 ILE A 669 1 O ARG A 667 N LEU A 94 SHEET 4 B 7 GLN A 145 SER A 150 1 N SER A 150 O CYS A 668 SHEET 5 B 7 TYR A 450 ASP A 456 1 O GLY A 453 N GLN A 145 SHEET 6 B 7 GLY A 207 PHE A 214 -1 N LYS A 208 O ASP A 456 SHEET 7 B 7 VAL A 220 TYR A 228 -1 O PHE A 224 N GLU A 211 SHEET 1 C 2 ASN A 194 ALA A 195 0 SHEET 2 C 2 SER A 203 SER A 204 -1 O SER A 203 N ALA A 195 SHEET 1 D 3 LEU A 557 SER A 558 0 SHEET 2 D 3 GLY A 576 HIS A 581 -1 O ILE A 578 N SER A 558 SHEET 3 D 3 GLY A 584 GLU A 589 -1 O TYR A 588 N PHE A 577 SHEET 1 E 3 SER A 707 SER A 710 0 SHEET 2 E 3 LYS A 755 PHE A 758 -1 O VAL A 756 N ALA A 709 SHEET 3 E 3 TYR A 749 PHE A 751 -1 N LYS A 750 O PHE A 757 SHEET 1 F 2 THR B 26 ILE B 27 0 SHEET 2 F 2 ILE B 63 ASP B 64 -1 O ILE B 63 N ILE B 27 LINK OG1 THR A 158 MG MG A 903 1555 1555 2.21 LINK OG SER A 204 MG MG A 903 1555 1555 2.33 LINK O3B ADP A 901 BE BEF A 902 1555 1555 1.59 LINK O2B ADP A 901 MG MG A 903 1555 1555 2.15 LINK MG MG A 903 O HOH A1001 1555 1555 2.17 LINK MG MG A 903 O HOH A1002 1555 1555 2.18 LINK OD1 ASP B 20 CA CA B 201 1555 1555 2.73 LINK OD2 ASP B 22 CA CA B 201 1555 1555 2.54 LINK OD1 ASP B 22 CA CA B 201 1555 1555 2.72 LINK OD2 ASP B 24 CA CA B 201 1555 1555 2.68 LINK OD1 ASP B 24 CA CA B 201 1555 1555 3.04 LINK O THR B 26 CA CA B 201 1555 1555 2.35 LINK OE1 GLU B 31 CA CA B 201 1555 1555 3.09 LINK OD1 ASP B 56 CA CA B 202 1555 1555 2.91 LINK OD1 ASP B 58 CA CA B 202 1555 1555 2.66 LINK OD1 ASN B 60 CA CA B 202 1555 1555 3.18 LINK O THR B 62 CA CA B 202 1555 1555 2.62 LINK OE1 GLU B 67 CA CA B 202 1555 1555 2.86 LINK OD1 ASP B 93 CA CA B 203 1555 1555 2.40 LINK OD1 ASP B 95 CA CA B 203 1555 1555 2.40 LINK OD1 ASN B 97 CA CA B 203 1555 1555 2.54 LINK O PHE B 99 CA CA B 203 1555 1555 2.35 LINK OE1 GLU B 104 CA CA B 203 1555 1555 2.54 LINK OE2 GLU B 104 CA CA B 203 1555 1555 2.71 LINK OD2 ASP B 129 CA CA B 204 1555 1555 2.45 LINK OD1 ASP B 131 CA CA B 204 1555 1555 2.60 LINK OD1 ASP B 133 CA CA B 204 1555 1555 2.52 LINK O GLN B 135 CA CA B 204 1555 1555 2.49 LINK OE1 GLU B 140 CA CA B 204 1555 1555 2.62 LINK OE2 GLU B 140 CA CA B 204 1555 1555 2.75 LINK CA CA B 202 O HOH B 327 1555 1555 2.83 LINK CA CA B 203 O HOH B 305 1555 1555 2.74 LINK CA CA B 204 O HOH B 323 1555 1555 2.68 SITE 1 AC1 21 ASN A 98 PRO A 99 TYR A 100 PHE A 101 SITE 2 AC1 21 ASP A 102 TYR A 107 GLU A 152 GLY A 154 SITE 3 AC1 21 ALA A 155 GLY A 156 LYS A 157 THR A 158 SITE 4 AC1 21 GLU A 159 PHE A 163 ASN A 200 BEF A 902 SITE 5 AC1 21 MG A 903 HOH A1001 HOH A1064 HOH A1090 SITE 6 AC1 21 HOH A1176 SITE 1 AC2 8 SER A 153 LYS A 157 ASN A 200 SER A 203 SITE 2 AC2 8 SER A 204 ADP A 901 MG A 903 HOH A1001 SITE 1 AC3 6 THR A 158 SER A 204 ADP A 901 BEF A 902 SITE 2 AC3 6 HOH A1001 HOH A1002 SITE 1 AC4 2 GLN A 541 HIS A 542 SITE 1 AC5 3 GLU A 333 ARG A 438 GLN A 441 SITE 1 AC6 5 ASP B 20 ASP B 22 ASP B 24 THR B 26 SITE 2 AC6 5 GLU B 31 SITE 1 AC7 6 ASP B 56 ASP B 58 ASN B 60 THR B 62 SITE 2 AC7 6 GLU B 67 HOH B 327 SITE 1 AC8 6 ASP B 93 ASP B 95 ASN B 97 PHE B 99 SITE 2 AC8 6 GLU B 104 HOH B 305 SITE 1 AC9 6 ASP B 129 ASP B 131 ASP B 133 GLN B 135 SITE 2 AC9 6 GLU B 140 HOH B 323 SITE 1 BC1 5 LEU A 801 GLN B 8 SER B 81 ILE B 85 SITE 2 BC1 5 HOH B 332 CRYST1 73.310 107.880 179.950 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013641 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009270 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005557 0.00000