HEADER TRANSFERASE/TRANSFERASE SUBSTRATE 17-JAN-12 4DC2 TITLE STRUCTURE OF PKC IN COMPLEX WITH A SUBSTRATE PEPTIDE FROM PAR-3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN KINASE C IOTA TYPE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 231-595; COMPND 5 SYNONYM: PKC, ATYPICAL PROTEIN KINASE C-LAMBDA/IOTA, APKC- COMPND 6 LAMBDA/IOTA, NPKC-IOTA; COMPND 7 EC: 2.7.11.13; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: PARTITIONING DEFECTIVE 3 HOMOLOG; COMPND 11 CHAIN: Z; COMPND 12 FRAGMENT: SUBSTRATE PEPTIDE, UNP RESIDUES 813-840; COMPND 13 SYNONYM: PAR-3, PARD-3, ATYPICAL PKC ISOTYPE-SPECIFIC-INTERACTING COMPND 14 PROTEIN, ASIP, ATYPICAL PKC-SPECIFIC-BINDING PROTEIN, ASBP; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PKCL; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 13 ORGANISM_COMMON: RAT; SOURCE 14 ORGANISM_TAXID: 10116; SOURCE 15 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS/MOUSES/RATS. KEYWDS KINASE, SUBSTRATE, CELL POLARITY, PAR-3, ATYPICAL PKC, TRANSFERASE- KEYWDS 2 TRANSFERASE SUBSTRATE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.SHANG,C.WANG,J.YU,M.ZHANG REVDAT 1 11-JUL-12 4DC2 0 JRNL AUTH C.WANG,Y.SHANG,J.YU,M.ZHANG JRNL TITL SUBSTRATE RECOGNITION MECHANISM OF ATYPICAL PROTEIN KINASE JRNL TITL 2 CS REVEALED BY THE STRUCTURE OF PKC IOTA IN COMPLEX WITH A JRNL TITL 3 SUBSTRATE PEPTIDE FROM PAR-3 JRNL REF STRUCTURE V. 20 791 2012 JRNL REFN ISSN 0969-2126 JRNL PMID 22579248 JRNL DOI 10.1016/J.STR.2012.02.022 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_629) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 82.6 REMARK 3 NUMBER OF REFLECTIONS : 13400 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 659 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 21.1803 - 4.0961 0.83 2613 149 0.1556 0.1973 REMARK 3 2 4.0961 - 3.2550 0.86 2651 130 0.1556 0.2488 REMARK 3 3 3.2550 - 2.8446 0.86 2647 132 0.1904 0.2723 REMARK 3 4 2.8446 - 2.5850 0.82 2509 129 0.2048 0.2982 REMARK 3 5 2.5850 - 2.4000 0.76 2321 119 0.2136 0.2990 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 45.25 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.72 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.16920 REMARK 3 B22 (A**2) : 0.69700 REMARK 3 B33 (A**2) : 1.47220 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : 1.22380 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2764 REMARK 3 ANGLE : 1.132 3747 REMARK 3 CHIRALITY : 0.078 406 REMARK 3 PLANARITY : 0.005 485 REMARK 3 DIHEDRAL : 14.204 981 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (chain A and resid 239:394) REMARK 3 ORIGIN FOR THE GROUP (A): 6.5796 -9.7113 13.7984 REMARK 3 T TENSOR REMARK 3 T11: 0.1875 T22: 0.1802 REMARK 3 T33: 0.1293 T12: -0.0466 REMARK 3 T13: 0.0348 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.5296 L22: 0.5216 REMARK 3 L33: 0.7620 L12: 0.3886 REMARK 3 L13: 0.4306 L23: -0.0453 REMARK 3 S TENSOR REMARK 3 S11: -0.1334 S12: 0.2568 S13: -0.0035 REMARK 3 S21: -0.1277 S22: 0.1525 S23: -0.0873 REMARK 3 S31: -0.1956 S32: 0.0688 S33: -0.0355 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (chain A and resid 395:469) REMARK 3 ORIGIN FOR THE GROUP (A): 2.4416 -25.6088 27.4723 REMARK 3 T TENSOR REMARK 3 T11: 0.0993 T22: 0.0395 REMARK 3 T33: 0.1509 T12: 0.0122 REMARK 3 T13: -0.0555 T23: 0.0098 REMARK 3 L TENSOR REMARK 3 L11: 0.2494 L22: 0.0624 REMARK 3 L33: 0.5965 L12: 0.0105 REMARK 3 L13: 0.0467 L23: -0.1317 REMARK 3 S TENSOR REMARK 3 S11: -0.0090 S12: -0.0222 S13: -0.1627 REMARK 3 S21: 0.0665 S22: 0.0475 S23: -0.1527 REMARK 3 S31: 0.2727 S32: -0.1993 S33: -0.0473 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (chain A and resid 470:577) REMARK 3 ORIGIN FOR THE GROUP (A): 0.0215 -12.8381 19.0586 REMARK 3 T TENSOR REMARK 3 T11: 0.0402 T22: -0.1354 REMARK 3 T33: -0.0795 T12: -0.1655 REMARK 3 T13: -0.0554 T23: -0.2453 REMARK 3 L TENSOR REMARK 3 L11: 0.2585 L22: 0.3641 REMARK 3 L33: 0.6701 L12: 0.0337 REMARK 3 L13: 0.0979 L23: 0.0581 REMARK 3 S TENSOR REMARK 3 S11: 0.0551 S12: -0.0014 S13: -0.0101 REMARK 3 S21: 0.0130 S22: 0.4192 S23: 0.1662 REMARK 3 S31: -0.4131 S32: -0.5495 S33: 0.0641 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (chain Z and resid 1047:1062) REMARK 3 ORIGIN FOR THE GROUP (A): 9.9009 -15.1037 31.7255 REMARK 3 T TENSOR REMARK 3 T11: 0.1578 T22: 0.2544 REMARK 3 T33: 0.3517 T12: -0.0511 REMARK 3 T13: 0.0253 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 0.2002 L22: 0.6255 REMARK 3 L33: 0.0855 L12: -0.0206 REMARK 3 L13: 0.1039 L23: 0.0760 REMARK 3 S TENSOR REMARK 3 S11: 0.0954 S12: 0.0209 S13: -0.0974 REMARK 3 S21: 0.0909 S22: 0.0117 S23: -0.2522 REMARK 3 S31: 0.1370 S32: 0.0877 S33: -0.0024 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4DC2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-JAN-12. REMARK 100 THE RCSB ID CODE IS RCSB070141. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 200.0 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13400 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 21.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 82.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.5M SODIUM FORMATE, PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.72800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.45000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.72800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.45000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, Z REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 191 REMARK 465 SER A 192 REMARK 465 TYR A 193 REMARK 465 TYR A 194 REMARK 465 HIS A 195 REMARK 465 HIS A 196 REMARK 465 HIS A 197 REMARK 465 HIS A 198 REMARK 465 HIS A 199 REMARK 465 HIS A 200 REMARK 465 ASP A 201 REMARK 465 TYR A 202 REMARK 465 ASP A 203 REMARK 465 ILE A 204 REMARK 465 PRO A 205 REMARK 465 THR A 206 REMARK 465 THR A 207 REMARK 465 GLU A 208 REMARK 465 ASN A 209 REMARK 465 LEU A 210 REMARK 465 TYR A 211 REMARK 465 PHE A 212 REMARK 465 GLN A 213 REMARK 465 GLY A 214 REMARK 465 ALA A 215 REMARK 465 MET A 216 REMARK 465 GLY A 217 REMARK 465 SER A 218 REMARK 465 GLY A 219 REMARK 465 ILE A 220 REMARK 465 GLU A 221 REMARK 465 GLU A 222 REMARK 465 GLU A 223 REMARK 465 LYS A 224 REMARK 465 GLU A 225 REMARK 465 ALA A 226 REMARK 465 MET A 227 REMARK 465 ASN A 228 REMARK 465 THR A 229 REMARK 465 ARG A 230 REMARK 465 GLU A 231 REMARK 465 SER A 232 REMARK 465 GLY A 233 REMARK 465 LYS A 234 REMARK 465 ALA A 235 REMARK 465 SER A 236 REMARK 465 SER A 237 REMARK 465 SER A 238 REMARK 465 ASP A 282 REMARK 465 ASP A 283 REMARK 465 GLU A 284 REMARK 465 ASP A 285 REMARK 465 SER A 449 REMARK 465 ASP A 450 REMARK 465 ASN A 451 REMARK 465 PRO A 452 REMARK 465 ASP A 453 REMARK 465 GLN A 454 REMARK 465 LEU A 578 REMARK 465 LEU A 579 REMARK 465 MET A 580 REMARK 465 SER A 581 REMARK 465 ALA A 582 REMARK 465 GLU A 583 REMARK 465 GLU A 584 REMARK 465 CYS A 585 REMARK 465 VAL A 586 REMARK 465 ASP Z 1046 REMARK 465 GLU Z 1063 REMARK 465 LYS Z 1064 REMARK 465 ARG Z 1065 REMARK 465 THR Z 1066 REMARK 465 LYS Z 1067 REMARK 465 GLN Z 1068 REMARK 465 PHE Z 1069 REMARK 465 SER Z 1070 REMARK 465 ASN Z 1071 REMARK 465 ALA Z 1072 REMARK 465 SER Z 1073 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 248 NE CZ NH1 NH2 REMARK 470 ARG A 252 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 264 CG CD CE NZ REMARK 470 LYS A 265 CG CD CE NZ REMARK 470 ARG A 268 CD NE CZ NH1 NH2 REMARK 470 GLU A 278 CG CD OE1 OE2 REMARK 470 ASN A 281 CG OD1 ND2 REMARK 470 ILE A 286 CG1 CG2 CD1 REMARK 470 GLN A 290 CG CD OE1 NE2 REMARK 470 GLU A 315 CG CD OE1 OE2 REMARK 470 ARG A 395 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 455 CG OD1 ND2 REMARK 470 GLU A 457 CG CD OE1 OE2 REMARK 470 ARG A 470 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 492 CG CD CE NZ REMARK 470 GLU A 493 CG CD OE1 OE2 REMARK 470 ARG A 513 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 536 CG CD OE1 OE2 REMARK 470 LEU A 553 CG CD1 CD2 REMARK 470 ASP A 556 CG OD1 OD2 REMARK 470 ASP A 557 CG OD1 OD2 REMARK 470 ASP A 558 CG OD1 OD2 REMARK 470 ASP A 559 CG OD1 OD2 REMARK 470 ILE A 560 CG1 CG2 CD1 REMARK 470 ARG A 562 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 563 CG CD CE NZ REMARK 470 ILE A 564 CG1 CG2 CD1 REMARK 470 ASP A 565 CG OD1 OD2 REMARK 470 GLU A 568 CG CD OE1 OE2 REMARK 470 GLU A 570 CG CD OE1 OE2 REMARK 470 GLU Z1054 CG CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 SER A 476 CA CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 278 0.16 -57.33 REMARK 500 THR A 314 -167.98 -104.46 REMARK 500 ARG A 338 -51.40 68.25 REMARK 500 ARG A 367 -5.86 70.59 REMARK 500 ASP A 386 97.17 60.87 REMARK 500 PHE A 537 -7.89 91.12 REMARK 500 GLN A 545 -7.50 -58.62 REMARK 500 LYS A 563 36.11 -98.01 REMARK 500 GLU A 568 2.84 -68.87 REMARK 500 LEU Z1049 48.05 -96.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 744 DISTANCE = 5.08 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADE A 601 DBREF 4DC2 A 222 586 UNP Q62074 KPCI_MOUSE 231 595 DBREF 4DC2 Z 1046 1073 UNP Q9Z340 PARD3_RAT 813 840 SEQADV 4DC2 MET A 191 UNP Q62074 EXPRESSION TAG SEQADV 4DC2 SER A 192 UNP Q62074 EXPRESSION TAG SEQADV 4DC2 TYR A 193 UNP Q62074 EXPRESSION TAG SEQADV 4DC2 TYR A 194 UNP Q62074 EXPRESSION TAG SEQADV 4DC2 HIS A 195 UNP Q62074 EXPRESSION TAG SEQADV 4DC2 HIS A 196 UNP Q62074 EXPRESSION TAG SEQADV 4DC2 HIS A 197 UNP Q62074 EXPRESSION TAG SEQADV 4DC2 HIS A 198 UNP Q62074 EXPRESSION TAG SEQADV 4DC2 HIS A 199 UNP Q62074 EXPRESSION TAG SEQADV 4DC2 HIS A 200 UNP Q62074 EXPRESSION TAG SEQADV 4DC2 ASP A 201 UNP Q62074 EXPRESSION TAG SEQADV 4DC2 TYR A 202 UNP Q62074 EXPRESSION TAG SEQADV 4DC2 ASP A 203 UNP Q62074 EXPRESSION TAG SEQADV 4DC2 ILE A 204 UNP Q62074 EXPRESSION TAG SEQADV 4DC2 PRO A 205 UNP Q62074 EXPRESSION TAG SEQADV 4DC2 THR A 206 UNP Q62074 EXPRESSION TAG SEQADV 4DC2 THR A 207 UNP Q62074 EXPRESSION TAG SEQADV 4DC2 GLU A 208 UNP Q62074 EXPRESSION TAG SEQADV 4DC2 ASN A 209 UNP Q62074 EXPRESSION TAG SEQADV 4DC2 LEU A 210 UNP Q62074 EXPRESSION TAG SEQADV 4DC2 TYR A 211 UNP Q62074 EXPRESSION TAG SEQADV 4DC2 PHE A 212 UNP Q62074 EXPRESSION TAG SEQADV 4DC2 GLN A 213 UNP Q62074 EXPRESSION TAG SEQADV 4DC2 GLY A 214 UNP Q62074 EXPRESSION TAG SEQADV 4DC2 ALA A 215 UNP Q62074 EXPRESSION TAG SEQADV 4DC2 MET A 216 UNP Q62074 EXPRESSION TAG SEQADV 4DC2 GLY A 217 UNP Q62074 EXPRESSION TAG SEQADV 4DC2 SER A 218 UNP Q62074 EXPRESSION TAG SEQADV 4DC2 GLY A 219 UNP Q62074 EXPRESSION TAG SEQADV 4DC2 ILE A 220 UNP Q62074 EXPRESSION TAG SEQADV 4DC2 GLU A 221 UNP Q62074 EXPRESSION TAG SEQADV 4DC2 ARG A 273 UNP Q62074 LYS 282 CONFLICT SEQRES 1 A 396 MET SER TYR TYR HIS HIS HIS HIS HIS HIS ASP TYR ASP SEQRES 2 A 396 ILE PRO THR THR GLU ASN LEU TYR PHE GLN GLY ALA MET SEQRES 3 A 396 GLY SER GLY ILE GLU GLU GLU LYS GLU ALA MET ASN THR SEQRES 4 A 396 ARG GLU SER GLY LYS ALA SER SER SER LEU GLY LEU GLN SEQRES 5 A 396 ASP PHE ASP LEU LEU ARG VAL ILE GLY ARG GLY SER TYR SEQRES 6 A 396 ALA LYS VAL LEU LEU VAL ARG LEU LYS LYS THR ASP ARG SEQRES 7 A 396 ILE TYR ALA MET ARG VAL VAL LYS LYS GLU LEU VAL ASN SEQRES 8 A 396 ASP ASP GLU ASP ILE ASP TRP VAL GLN THR GLU LYS HIS SEQRES 9 A 396 VAL PHE GLU GLN ALA SER ASN HIS PRO PHE LEU VAL GLY SEQRES 10 A 396 LEU HIS SER CYS PHE GLN THR GLU SER ARG LEU PHE PHE SEQRES 11 A 396 VAL ILE GLU TYR VAL ASN GLY GLY ASP LEU MET PHE HIS SEQRES 12 A 396 MET GLN ARG GLN ARG LYS LEU PRO GLU GLU HIS ALA ARG SEQRES 13 A 396 PHE TYR SER ALA GLU ILE SER LEU ALA LEU ASN TYR LEU SEQRES 14 A 396 HIS GLU ARG GLY ILE ILE TYR ARG ASP LEU LYS LEU ASP SEQRES 15 A 396 ASN VAL LEU LEU ASP SER GLU GLY HIS ILE LYS LEU THR SEQRES 16 A 396 ASP TYR GLY MET CYS LYS GLU GLY LEU ARG PRO GLY ASP SEQRES 17 A 396 THR THR SER THR PHE CYS GLY THR PRO ASN TYR ILE ALA SEQRES 18 A 396 PRO GLU ILE LEU ARG GLY GLU ASP TYR GLY PHE SER VAL SEQRES 19 A 396 ASP TRP TRP ALA LEU GLY VAL LEU MET PHE GLU MET MET SEQRES 20 A 396 ALA GLY ARG SER PRO PHE ASP ILE VAL GLY SER SER ASP SEQRES 21 A 396 ASN PRO ASP GLN ASN THR GLU ASP TYR LEU PHE GLN VAL SEQRES 22 A 396 ILE LEU GLU LYS GLN ILE ARG ILE PRO ARG SER LEU SER SEQRES 23 A 396 VAL LYS ALA ALA SER VAL LEU LYS SER PHE LEU ASN LYS SEQRES 24 A 396 ASP PRO LYS GLU ARG LEU GLY CYS HIS PRO GLN THR GLY SEQRES 25 A 396 PHE ALA ASP ILE GLN GLY HIS PRO PHE PHE ARG ASN VAL SEQRES 26 A 396 ASP TRP ASP MET MET GLU GLN LYS GLN VAL VAL PRO PRO SEQRES 27 A 396 PHE LYS PRO ASN ILE SER GLY GLU PHE GLY LEU ASP ASN SEQRES 28 A 396 PHE ASP SER GLN PHE THR ASN GLU PRO VAL GLN LEU TPO SEQRES 29 A 396 PRO ASP ASP ASP ASP ILE VAL ARG LYS ILE ASP GLN SER SEQRES 30 A 396 GLU PHE GLU GLY PHE GLU TYR ILE ASN PRO LEU LEU MET SEQRES 31 A 396 SER ALA GLU GLU CYS VAL SEQRES 1 Z 28 ASP PRO VAL LEU ALA PHE GLN ARG GLU GLY PHE GLY ARG SEQRES 2 Z 28 GLN SER MET SER GLU LYS ARG THR LYS GLN PHE SER ASN SEQRES 3 Z 28 ALA SER MODRES 4DC2 TPO A 554 THR PHOSPHOTHREONINE HET TPO A 554 11 HET ADE A 601 10 HETNAM TPO PHOSPHOTHREONINE HETNAM ADE ADENINE HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 TPO C4 H10 N O6 P FORMUL 3 ADE C5 H5 N5 FORMUL 4 HOH *52(H2 O) HELIX 1 1 GLY A 240 GLN A 242 5 3 HELIX 2 2 GLU A 278 VAL A 280 5 3 HELIX 3 3 ASP A 287 SER A 300 1 14 HELIX 4 4 ASP A 329 ARG A 338 1 10 HELIX 5 5 PRO A 341 ARG A 362 1 22 HELIX 6 6 LYS A 370 ASP A 372 5 3 HELIX 7 7 THR A 406 ILE A 410 5 5 HELIX 8 8 ALA A 411 ARG A 416 1 6 HELIX 9 9 PHE A 422 GLY A 439 1 18 HELIX 10 10 THR A 456 LYS A 467 1 12 HELIX 11 11 SER A 476 LEU A 487 1 12 HELIX 12 12 THR A 501 HIS A 509 1 9 HELIX 13 13 ASP A 516 GLN A 522 1 7 HELIX 14 14 GLY A 538 PHE A 542 5 5 HELIX 15 15 ASP A 543 ASN A 548 1 6 HELIX 16 16 ASP A 557 ARG A 562 1 6 HELIX 17 17 ASP A 565 GLU A 570 5 6 SHEET 1 A 6 PHE A 244 ARG A 252 0 SHEET 2 A 6 ALA A 256 LEU A 263 -1 O LEU A 260 N ARG A 248 SHEET 3 A 6 ILE A 269 LYS A 276 -1 O TYR A 270 N VAL A 261 SHEET 4 A 6 ARG A 317 GLU A 323 -1 O LEU A 318 N VAL A 275 SHEET 5 A 6 LEU A 308 GLN A 313 -1 N HIS A 309 O VAL A 321 SHEET 6 A 6 TYR A 574 ILE A 575 -1 O TYR A 574 N CYS A 311 SHEET 1 B 2 VAL A 374 LEU A 376 0 SHEET 2 B 2 ILE A 382 LEU A 384 -1 O LYS A 383 N LEU A 375 LINK C LEU A 553 N TPO A 554 1555 1555 1.33 LINK C TPO A 554 N PRO A 555 1555 1555 1.34 SITE 1 AC1 6 ILE A 322 GLU A 323 VAL A 325 LEU A 375 SITE 2 AC1 6 THR A 385 PHE A 542 CRYST1 101.456 54.900 82.489 90.00 115.18 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009856 0.000000 0.004633 0.00000 SCALE2 0.000000 0.018215 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013395 0.00000