HEADER PROTEIN BINDING/SIGNALING PROTEIN 18-JAN-12 4DCN TITLE CRYSTAL STRUCTURE ANALYSIS OF THE ARFAPTIN2 BAR DOMAIN IN COMPLEX WITH TITLE 2 ARL1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINUS TRUNCATED ARL1, RESIDUES 14-179; COMPND 5 SYNONYM: ARL1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: ARFAPTIN-2; COMPND 10 CHAIN: C, D; COMPND 11 FRAGMENT: C-TERMINAL BAR DOMAIN, RESIDUES 118-315; COMPND 12 SYNONYM: ADP-RIBOSYLATION FACTOR-INTERACTING PROTEIN 2, PARTNER OF COMPND 13 RAC1, PROTEIN POR1; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ARL1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P1; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: ARFIP2; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PGEX-4T3 KEYWDS SMALL GTPASE EFFECTOR COMPLEX, BAR DOMAIN, MEMBRANE DEFORMATION, KEYWDS 2 PROTEIN BINDING-SIGNALING PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.NAKAMURA,Y.XIE,M.KAWASAKI,R.KATO,S.WAKATSUKI REVDAT 3 20-MAR-24 4DCN 1 REMARK SEQADV LINK REVDAT 2 26-JUN-13 4DCN 1 JRNL REVDAT 1 13-JUN-12 4DCN 0 JRNL AUTH K.NAKAMURA,Z.MAN,Y.XIE,A.HANAI,H.MAKYIO,M.KAWASAKI,R.KATO, JRNL AUTH 2 H.-W.SHIN,K.NAKAYAMA,S.WAKATSUKI JRNL TITL STRUCTURAL BASIS FOR MEMBRANE BINDING SPECIFICITY OF THE JRNL TITL 2 BIN/AMPHIPHYSIN/RVS (BAR) DOMAIN OF ARFAPTIN-2 DETERMINED BY JRNL TITL 3 ARL1 GTPASE JRNL REF J.BIOL.CHEM. V. 287 25478 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22679020 JRNL DOI 10.1074/JBC.M112.365783 REMARK 2 REMARK 2 RESOLUTION. 3.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 16567 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.264 REMARK 3 FREE R VALUE : 0.333 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 834 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.02 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.09 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1003 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.3220 REMARK 3 BIN FREE R VALUE SET COUNT : 53 REMARK 3 BIN FREE R VALUE : 0.4360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5735 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 4 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.23000 REMARK 3 B22 (A**2) : -4.41000 REMARK 3 B33 (A**2) : 4.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.661 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.874 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.777 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5887 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7954 ; 1.022 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 715 ; 4.762 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 267 ;39.325 ;24.382 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1106 ;18.424 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;16.309 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 915 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4284 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3559 ; 0.341 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5720 ; 0.646 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2328 ; 0.681 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2234 ; 1.213 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 4DCN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000070161. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16567 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES, 200MM AMMONIUM SULFATE, REMARK 280 25%(W/V) PEG3350, PH 7.5, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.38200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.90450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.56250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.90450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.38200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.56250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -82.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 14 REMARK 465 GLY B 14 REMARK 465 GLY C 118 REMARK 465 ASN C 312 REMARK 465 GLN C 313 REMARK 465 LYS C 314 REMARK 465 GLN C 315 REMARK 465 GLY D 118 REMARK 465 SER D 119 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 60 14.82 55.97 REMARK 500 CYS A 95 48.03 -95.50 REMARK 500 ASP A 96 54.10 -144.86 REMARK 500 ALA A 147 36.46 -99.82 REMARK 500 ASP B 96 72.44 -109.13 REMARK 500 ARG B 151 115.02 -169.67 REMARK 500 ASP C 251 -179.20 -178.75 REMARK 500 THR C 254 -54.93 -148.80 REMARK 500 PRO D 176 32.65 -76.48 REMARK 500 LEU D 178 48.06 -141.26 REMARK 500 LYS D 216 -53.36 -127.21 REMARK 500 PRO D 249 167.84 -49.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 31 OG1 REMARK 620 2 THR A 48 OG1 82.1 REMARK 620 3 GNP A 202 O2G 147.8 98.2 REMARK 620 4 GNP A 202 O2B 73.2 147.9 92.2 REMARK 620 5 HOH A 301 O 76.9 111.8 130.7 82.6 REMARK 620 6 HOH A 302 O 63.1 71.1 86.4 79.4 139.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 31 OG1 REMARK 620 2 THR B 48 OG1 85.8 REMARK 620 3 GNP B 202 O2B 89.6 173.0 REMARK 620 4 GNP B 202 O2G 178.5 94.0 90.5 REMARK 620 5 HOH B 301 O 90.4 91.3 94.0 91.1 REMARK 620 6 HOH B 302 O 80.2 87.2 86.8 98.3 170.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP B 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MOZ RELATED DB: PDB REMARK 900 ARL1 REMARK 900 RELATED ID: 1UPT RELATED DB: PDB REMARK 900 ARL1 IN COMPLEX WITH DIFFERENT EFFECTOR REMARK 900 RELATED ID: 1I49 RELATED DB: PDB REMARK 900 ARFAPTIN-2 BAR DOMAIN REMARK 900 RELATED ID: 1I4L RELATED DB: PDB REMARK 900 ARFAPTIN-2 BAR DOMAIN IN COMPLEX WITH DIFFERENT SMALL GTPASE REMARK 900 RELATED ID: 3DYT RELATED DB: PDB REMARK 900 PX-BAR DOMAIN DBREF 4DCN A 14 179 UNP P40616 ARL1_HUMAN 14 179 DBREF 4DCN B 14 179 UNP P40616 ARL1_HUMAN 14 179 DBREF 4DCN C 118 315 UNP P53365 ARFP2_HUMAN 118 315 DBREF 4DCN D 118 315 UNP P53365 ARFP2_HUMAN 118 315 SEQADV 4DCN LEU A 71 UNP P40616 GLN 71 ENGINEERED MUTATION SEQADV 4DCN LEU B 71 UNP P40616 GLN 71 ENGINEERED MUTATION SEQRES 1 A 166 GLY THR ARG GLU MET ARG ILE LEU ILE LEU GLY LEU ASP SEQRES 2 A 166 GLY ALA GLY LYS THR THR ILE LEU TYR ARG LEU GLN VAL SEQRES 3 A 166 GLY GLU VAL VAL THR THR ILE PRO THR ILE GLY PHE ASN SEQRES 4 A 166 VAL GLU THR VAL THR TYR LYS ASN LEU LYS PHE GLN VAL SEQRES 5 A 166 TRP ASP LEU GLY GLY LEU THR SER ILE ARG PRO TYR TRP SEQRES 6 A 166 ARG CYS TYR TYR SER ASN THR ASP ALA VAL ILE TYR VAL SEQRES 7 A 166 VAL ASP SER CYS ASP ARG ASP ARG ILE GLY ILE SER LYS SEQRES 8 A 166 SER GLU LEU VAL ALA MET LEU GLU GLU GLU GLU LEU ARG SEQRES 9 A 166 LYS ALA ILE LEU VAL VAL PHE ALA ASN LYS GLN ASP MET SEQRES 10 A 166 GLU GLN ALA MET THR SER SER GLU MET ALA ASN SER LEU SEQRES 11 A 166 GLY LEU PRO ALA LEU LYS ASP ARG LYS TRP GLN ILE PHE SEQRES 12 A 166 LYS THR SER ALA THR LYS GLY THR GLY LEU ASP GLU ALA SEQRES 13 A 166 MET GLU TRP LEU VAL GLU THR LEU LYS SER SEQRES 1 B 166 GLY THR ARG GLU MET ARG ILE LEU ILE LEU GLY LEU ASP SEQRES 2 B 166 GLY ALA GLY LYS THR THR ILE LEU TYR ARG LEU GLN VAL SEQRES 3 B 166 GLY GLU VAL VAL THR THR ILE PRO THR ILE GLY PHE ASN SEQRES 4 B 166 VAL GLU THR VAL THR TYR LYS ASN LEU LYS PHE GLN VAL SEQRES 5 B 166 TRP ASP LEU GLY GLY LEU THR SER ILE ARG PRO TYR TRP SEQRES 6 B 166 ARG CYS TYR TYR SER ASN THR ASP ALA VAL ILE TYR VAL SEQRES 7 B 166 VAL ASP SER CYS ASP ARG ASP ARG ILE GLY ILE SER LYS SEQRES 8 B 166 SER GLU LEU VAL ALA MET LEU GLU GLU GLU GLU LEU ARG SEQRES 9 B 166 LYS ALA ILE LEU VAL VAL PHE ALA ASN LYS GLN ASP MET SEQRES 10 B 166 GLU GLN ALA MET THR SER SER GLU MET ALA ASN SER LEU SEQRES 11 B 166 GLY LEU PRO ALA LEU LYS ASP ARG LYS TRP GLN ILE PHE SEQRES 12 B 166 LYS THR SER ALA THR LYS GLY THR GLY LEU ASP GLU ALA SEQRES 13 B 166 MET GLU TRP LEU VAL GLU THR LEU LYS SER SEQRES 1 C 198 GLY SER ARG THR VAL ASP LEU GLU LEU GLU LEU GLN ILE SEQRES 2 C 198 GLU LEU LEU ARG GLU THR LYS ARG LYS TYR GLU SER VAL SEQRES 3 C 198 LEU GLN LEU GLY ARG ALA LEU THR ALA HIS LEU TYR SER SEQRES 4 C 198 LEU LEU GLN THR GLN HIS ALA LEU GLY ASP ALA PHE ALA SEQRES 5 C 198 ASP LEU SER GLN LYS SER PRO GLU LEU GLN GLU GLU PHE SEQRES 6 C 198 GLY TYR ASN ALA GLU THR GLN LYS LEU LEU CYS LYS ASN SEQRES 7 C 198 GLY GLU THR LEU LEU GLY ALA VAL ASN PHE PHE VAL SER SEQRES 8 C 198 SER ILE ASN THR LEU VAL THR LYS THR MET GLU ASP THR SEQRES 9 C 198 LEU MET THR VAL LYS GLN TYR GLU ALA ALA ARG LEU GLU SEQRES 10 C 198 TYR ASP ALA TYR ARG THR ASP LEU GLU GLU LEU SER LEU SEQRES 11 C 198 GLY PRO ARG ASP ALA GLY THR ARG GLY ARG LEU GLU SER SEQRES 12 C 198 ALA GLN ALA THR PHE GLN ALA HIS ARG ASP LYS TYR GLU SEQRES 13 C 198 LYS LEU ARG GLY ASP VAL ALA ILE LYS LEU LYS PHE LEU SEQRES 14 C 198 GLU GLU ASN LYS ILE LYS VAL MET HIS LYS GLN LEU LEU SEQRES 15 C 198 LEU PHE HIS ASN ALA VAL SER ALA TYR PHE ALA GLY ASN SEQRES 16 C 198 GLN LYS GLN SEQRES 1 D 198 GLY SER ARG THR VAL ASP LEU GLU LEU GLU LEU GLN ILE SEQRES 2 D 198 GLU LEU LEU ARG GLU THR LYS ARG LYS TYR GLU SER VAL SEQRES 3 D 198 LEU GLN LEU GLY ARG ALA LEU THR ALA HIS LEU TYR SER SEQRES 4 D 198 LEU LEU GLN THR GLN HIS ALA LEU GLY ASP ALA PHE ALA SEQRES 5 D 198 ASP LEU SER GLN LYS SER PRO GLU LEU GLN GLU GLU PHE SEQRES 6 D 198 GLY TYR ASN ALA GLU THR GLN LYS LEU LEU CYS LYS ASN SEQRES 7 D 198 GLY GLU THR LEU LEU GLY ALA VAL ASN PHE PHE VAL SER SEQRES 8 D 198 SER ILE ASN THR LEU VAL THR LYS THR MET GLU ASP THR SEQRES 9 D 198 LEU MET THR VAL LYS GLN TYR GLU ALA ALA ARG LEU GLU SEQRES 10 D 198 TYR ASP ALA TYR ARG THR ASP LEU GLU GLU LEU SER LEU SEQRES 11 D 198 GLY PRO ARG ASP ALA GLY THR ARG GLY ARG LEU GLU SER SEQRES 12 D 198 ALA GLN ALA THR PHE GLN ALA HIS ARG ASP LYS TYR GLU SEQRES 13 D 198 LYS LEU ARG GLY ASP VAL ALA ILE LYS LEU LYS PHE LEU SEQRES 14 D 198 GLU GLU ASN LYS ILE LYS VAL MET HIS LYS GLN LEU LEU SEQRES 15 D 198 LEU PHE HIS ASN ALA VAL SER ALA TYR PHE ALA GLY ASN SEQRES 16 D 198 GLN LYS GLN HET MG A 201 1 HET GNP A 202 32 HET MG B 201 1 HET GNP B 202 32 HETNAM MG MAGNESIUM ION HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER FORMUL 5 MG 2(MG 2+) FORMUL 6 GNP 2(C10 H17 N6 O13 P3) FORMUL 9 HOH *4(H2 O) HELIX 1 1 GLY A 29 VAL A 39 1 11 HELIX 2 2 LEU A 71 ARG A 75 5 5 HELIX 3 3 TYR A 77 TYR A 82 5 6 HELIX 4 4 ARG A 99 GLU A 112 1 14 HELIX 5 5 THR A 135 GLY A 144 1 10 HELIX 6 6 GLY A 165 SER A 179 1 15 HELIX 7 7 GLY B 29 GLY B 40 1 12 HELIX 8 8 ILE B 74 TYR B 82 5 9 HELIX 9 9 ARG B 99 GLU B 112 1 14 HELIX 10 10 GLU B 113 ARG B 117 5 5 HELIX 11 11 THR B 135 GLY B 144 1 10 HELIX 12 12 LEU B 145 LEU B 148 5 4 HELIX 13 13 GLY B 165 SER B 179 1 15 HELIX 14 14 THR C 121 SER C 175 1 55 HELIX 15 15 LEU C 178 LYS C 216 1 39 HELIX 16 16 LYS C 216 LEU C 247 1 32 HELIX 17 17 THR C 254 GLY C 311 1 58 HELIX 18 18 THR D 121 SER D 175 1 55 HELIX 19 19 LEU D 178 LYS D 216 1 39 HELIX 20 20 LYS D 216 GLY D 248 1 33 HELIX 21 21 GLY D 253 LYS D 314 1 62 SHEET 1 A 6 PHE A 51 TYR A 58 0 SHEET 2 A 6 LEU A 61 LEU A 68 -1 O ASP A 67 N ASN A 52 SHEET 3 A 6 MET A 18 LEU A 23 1 N MET A 18 O GLN A 64 SHEET 4 A 6 ALA A 87 ASP A 93 1 O VAL A 91 N LEU A 23 SHEET 5 A 6 ILE A 120 ASN A 126 1 O VAL A 122 N TYR A 90 SHEET 6 A 6 TRP A 153 LYS A 157 1 O PHE A 156 N ALA A 125 SHEET 1 B 6 PHE B 51 THR B 57 0 SHEET 2 B 6 LYS B 62 LEU B 68 -1 O PHE B 63 N VAL B 56 SHEET 3 B 6 MET B 18 LEU B 23 1 N ILE B 20 O TRP B 66 SHEET 4 B 6 ALA B 87 ASP B 93 1 O VAL B 91 N LEU B 23 SHEET 5 B 6 ILE B 120 ASN B 126 1 O PHE B 124 N TYR B 90 SHEET 6 B 6 TRP B 153 LYS B 157 1 O PHE B 156 N ALA B 125 LINK OG1 THR A 31 MG MG A 201 1555 1555 2.40 LINK OG1 THR A 48 MG MG A 201 1555 1555 2.24 LINK MG MG A 201 O2G GNP A 202 1555 1555 1.82 LINK MG MG A 201 O2B GNP A 202 1555 1555 2.11 LINK MG MG A 201 O HOH A 301 1555 1555 1.89 LINK MG MG A 201 O HOH A 302 1555 1555 2.40 LINK OG1 THR B 31 MG MG B 201 1555 1555 1.94 LINK OG1 THR B 48 MG MG B 201 1555 1555 2.11 LINK MG MG B 201 O2B GNP B 202 1555 1555 1.87 LINK MG MG B 201 O2G GNP B 202 1555 1555 1.67 LINK MG MG B 201 O HOH B 301 1555 1555 1.94 LINK MG MG B 201 O HOH B 302 1555 1555 2.01 SITE 1 AC1 6 THR A 31 ILE A 46 THR A 48 GNP A 202 SITE 2 AC1 6 HOH A 301 HOH A 302 SITE 1 AC2 20 ASP A 26 GLY A 27 ALA A 28 GLY A 29 SITE 2 AC2 20 LYS A 30 THR A 31 THR A 32 THR A 45 SITE 3 AC2 20 THR A 48 GLY A 69 GLY A 70 ASN A 126 SITE 4 AC2 20 LYS A 127 ASP A 129 SER A 159 ALA A 160 SITE 5 AC2 20 THR A 161 MG A 201 HOH A 301 HOH A 302 SITE 1 AC3 5 THR B 31 THR B 48 GNP B 202 HOH B 301 SITE 2 AC3 5 HOH B 302 SITE 1 AC4 19 ASP B 26 GLY B 27 ALA B 28 GLY B 29 SITE 2 AC4 19 LYS B 30 THR B 31 THR B 32 THR B 45 SITE 3 AC4 19 THR B 48 GLY B 70 ASN B 126 LYS B 127 SITE 4 AC4 19 ASP B 129 SER B 159 ALA B 160 THR B 161 SITE 5 AC4 19 MG B 201 HOH B 301 HOH B 302 CRYST1 62.764 111.125 119.809 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015933 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008999 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008347 0.00000