HEADER IMMUNE SYSTEM 18-JAN-12 4DCQ TITLE CRYSTAL STRUCTURE OF THE FAB FRAGMENT OF 3B5H10, AN ANTIBODY-SPECIFIC TITLE 2 FOR EXTENDED POLYGLUTAMINE REPEATS (ORTHORHOMBIC FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3B5H10 FAB LIGHT CHAIN; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: 3B5H10 FAB HEAVY CHAIN; COMPND 6 CHAIN: B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 CELL: HYBRIDOMA; SOURCE 6 OTHER_DETAILS: MONOCLONAL ANTIBODY; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 9 ORGANISM_COMMON: MOUSE; SOURCE 10 ORGANISM_TAXID: 10090; SOURCE 11 CELL: HYBRIDOMA; SOURCE 12 OTHER_DETAILS: MONOCLONAL ANTIBODY KEYWDS FAB FRAGMENT, IMMUNOGLOBULIN DOMAIN, ANTI-POLYGLUTAMINE, KEYWDS 2 POLYGLUTAMINE REPEATS, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR C.A.PETERS-LIBEU,T.TRAN,S.FINKBEINER,K.WEISGRABER REVDAT 3 13-SEP-23 4DCQ 1 REMARK REVDAT 2 08-AUG-12 4DCQ 1 JRNL REVDAT 1 22-FEB-12 4DCQ 0 JRNL AUTH C.PETERS-LIBEU,J.MILLER,E.RUTENBER,Y.NEWHOUSE,P.KRISHNAN, JRNL AUTH 2 K.CHEUNG,D.HATTERS,E.BROOKS,K.WIDJAJA,T.TRAN,S.MITRA, JRNL AUTH 3 M.ARRASATE,L.A.MOSQUERA,D.TAYLOR,K.H.WEISGRABER,S.FINKBEINER JRNL TITL DISEASE-ASSOCIATED POLYGLUTAMINE STRETCHES IN MONOMERIC JRNL TITL 2 HUNTINGTIN ADOPT A COMPACT STRUCTURE. JRNL REF J.MOL.BIOL. V. 421 587 2012 JRNL REFN ISSN 0022-2836 JRNL PMID 22306738 JRNL DOI 10.1016/J.JMB.2012.01.034 REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 11.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 29209 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1461 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.94 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.99 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1525 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 74.26 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.3130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3316 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 365 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.68000 REMARK 3 B22 (A**2) : -0.37000 REMARK 3 B33 (A**2) : 1.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.199 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.180 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.120 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.089 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3460 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4730 ; 1.786 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 450 ; 9.296 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 130 ;40.413 ;25.077 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 549 ;17.150 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;22.798 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 535 ; 0.146 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2605 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2195 ; 1.301 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3578 ; 2.240 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1265 ; 3.239 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1144 ; 4.917 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4DCQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000070164. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-06 REMARK 200 TEMPERATURE (KELVIN) : 78 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29497 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : 0.07100 REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : 0.27000 REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 1.3.1 REMARK 200 STARTING MODEL: 3S96 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 200 MM CITRIC ACID,0.7% REMARK 280 ETHYLENE GLYCOL, PH 4.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 39.03400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 60.90750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.03400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 60.90750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 476 LIES ON A SPECIAL POSITION. REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ALA A 158 CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA B 207 O HOH B 565 1.90 REMARK 500 N LEU A 1 O HOH A 588 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER A 28 NE2 GLN A 196 3455 2.17 REMARK 500 OE2 GLU B 73 OE2 GLU B 73 2465 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA A 158 CA ALA A 158 CB -0.219 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA B 207 N - CA - C ANGL. DEV. = 19.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 87 166.11 176.22 REMARK 500 LYS A 98 83.92 18.71 REMARK 500 GLU A 99 -11.68 60.31 REMARK 500 GLN A 165 17.46 -30.55 REMARK 500 SER A 170 148.77 -36.19 REMARK 500 ASN A 171 53.30 -117.81 REMARK 500 LYS A 175 -152.96 -75.02 REMARK 500 ASN B 101 52.78 95.57 REMARK 500 ASN B 102 43.02 73.35 REMARK 500 PHE B 106 58.63 -140.45 REMARK 500 SER B 178 -141.33 55.94 REMARK 500 PRO B 206 -6.31 -51.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 97 LYS A 98 -146.62 REMARK 500 THR A 169 SER A 170 134.01 REMARK 500 PRO A 172 THR A 173 133.86 REMARK 500 GLY B 168 VAL B 169 -136.89 REMARK 500 PRO B 206 ALA B 207 142.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3S96 RELATED DB: PDB REMARK 900 MONOCLINIC CRYSTAL FORM OF 3B5H10 DBREF 4DCQ A 1 218 PDB 4DCQ 4DCQ 1 218 DBREF 4DCQ B 1 218 PDB 4DCQ 4DCQ 1 218 SEQRES 1 A 218 LEU VAL LEU THR GLN SER SER SER ALA SER PHE SER LEU SEQRES 2 A 218 GLY ALA SER ALA LYS LEU THR CYS THR LEU ASN SER GLN SEQRES 3 A 218 HIS SER THR TYR THR ILE GLU TRP TYR GLN GLN GLN PRO SEQRES 4 A 218 LEU LYS PRO PRO LYS TYR VAL MET GLU LEU LYS LYS ASP SEQRES 5 A 218 GLY SER HIS SER THR GLY ASP GLY ILE PRO ASP ARG PHE SEQRES 6 A 218 SER GLY SER SER SER GLY ALA ASP ARG TYR LEU LEU ILE SEQRES 7 A 218 SER ASN ILE GLN PRO GLU ASP GLU ALA ILE TYR ILE CYS SEQRES 8 A 218 GLY VAL GLY ASP THR ILE LYS GLU GLN PHE VAL TYR VAL SEQRES 9 A 218 PHE GLY GLY GLY THR LYS VAL THR VAL LEU GLY GLN PRO SEQRES 10 A 218 LYS SER THR PRO THR LEU THR VAL PHE PRO PRO SER SER SEQRES 11 A 218 GLU GLU LEU LYS GLU ASN LYS ALA THR LEU VAL CYS LEU SEQRES 12 A 218 ILE SER ASN PHE SER PRO SER GLY VAL THR VAL ALA TRP SEQRES 13 A 218 LYS ALA ASN GLY THR PRO ILE THR GLN GLY VAL ASP THR SEQRES 14 A 218 SER ASN PRO THR LYS LYS GLY ASN LYS PHE MET ALA SER SEQRES 15 A 218 SER PHE LEU HIS LEU THR SER ASP GLN TRP ARG SER HIS SEQRES 16 A 218 GLN SER PHE THR CYS GLN VAL THR HIS GLU GLY ASP THR SEQRES 17 A 218 VAL GLU LYS SER LEU SER PRO ALA LEU ARG SEQRES 1 B 218 GLN ILE GLN LEU VAL GLN SER GLY PRO GLU LEU LYS LYS SEQRES 2 B 218 PRO GLY GLU THR VAL LYS ILE SER CYS LYS ALA SER GLY SEQRES 3 B 218 TYR THR PHE THR THR TYR GLY MET SER TRP VAL LYS GLN SEQRES 4 B 218 ALA PRO GLY LYS GLY PHE GLU TRP MET GLY TRP ILE ASN SEQRES 5 B 218 THR TYR SER GLY VAL PRO THR TYR VAL ASP ASP PHE LYS SEQRES 6 B 218 GLY ARG PHE ALA PHE SER LEU GLU THR SER ALA SER THR SEQRES 7 B 218 ALA TYR LEU GLN ILE ASN ASN LEU LYS ASN GLU ASP THR SEQRES 8 B 218 ALA VAL TYR PHE CYS ALA ARG GLY GLY ASN ASN PHE LEU SEQRES 9 B 218 TRP PHE ALA TYR TRP GLY GLN GLY THR LEU VAL THR VAL SEQRES 10 B 218 SER ALA ALA LYS THR THR PRO PRO SER VAL TYR PRO LEU SEQRES 11 B 218 ALA PRO GLY SER ALA ALA GLN THR ASN SER MET VAL THR SEQRES 12 B 218 LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL SEQRES 13 B 218 THR VAL THR TRP ASN SER GLY SER LEU SER SER GLY VAL SEQRES 14 B 218 HIS THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR SEQRES 15 B 218 LEU SER SER SER VAL THR VAL PRO SER SER THR TRP PRO SEQRES 16 B 218 SER GLN THR VAL THR CYS ASN VAL ALA HIS PRO ALA SER SEQRES 17 B 218 SER THR LYS VAL ASP LYS LYS ILE VAL PRO HET EDO A 301 4 HET EDO B 301 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 HOH *365(H2 O) HELIX 1 1 SER A 25 SER A 28 5 4 HELIX 2 2 GLN A 82 GLU A 86 5 5 HELIX 3 3 SER A 129 GLU A 135 1 7 HELIX 4 4 SER A 189 SER A 194 1 6 HELIX 5 5 SER A 214 ARG A 218 5 5 HELIX 6 6 THR B 28 TYR B 32 5 5 HELIX 7 7 ASP B 62 LYS B 65 5 4 HELIX 8 8 THR B 74 ALA B 76 5 3 HELIX 9 9 LYS B 87 THR B 91 5 5 HELIX 10 10 SER B 162 SER B 164 5 3 SHEET 1 A 4 LEU A 3 THR A 4 0 SHEET 2 A 4 ALA A 17 LEU A 23 -1 O THR A 22 N THR A 4 SHEET 3 A 4 ASP A 73 ILE A 78 -1 O LEU A 76 N LEU A 19 SHEET 4 A 4 PHE A 65 SER A 70 -1 N SER A 66 O LEU A 77 SHEET 1 B 6 SER A 8 SER A 12 0 SHEET 2 B 6 THR A 109 LEU A 114 1 O LEU A 114 N PHE A 11 SHEET 3 B 6 ALA A 87 ILE A 97 -1 N ALA A 87 O VAL A 111 SHEET 4 B 6 ILE A 32 GLN A 37 -1 N GLN A 37 O ILE A 88 SHEET 5 B 6 LYS A 44 LEU A 49 -1 O LYS A 44 N GLN A 36 SHEET 6 B 6 HIS A 55 THR A 57 -1 O SER A 56 N GLU A 48 SHEET 1 C 4 SER A 8 SER A 12 0 SHEET 2 C 4 THR A 109 LEU A 114 1 O LEU A 114 N PHE A 11 SHEET 3 C 4 ALA A 87 ILE A 97 -1 N ALA A 87 O VAL A 111 SHEET 4 C 4 GLN A 100 PHE A 105 -1 O GLN A 100 N ILE A 97 SHEET 1 D 3 THR A 122 PHE A 126 0 SHEET 2 D 3 LYS A 137 PHE A 147 -1 O LEU A 143 N THR A 124 SHEET 3 D 3 PHE A 179 THR A 188 -1 O LEU A 187 N ALA A 138 SHEET 1 E 4 THR A 161 ILE A 163 0 SHEET 2 E 4 THR A 153 ALA A 158 -1 N ALA A 158 O THR A 161 SHEET 3 E 4 PHE A 198 HIS A 204 -1 O THR A 203 N THR A 153 SHEET 4 E 4 ASP A 207 LEU A 213 -1 O ASP A 207 N HIS A 204 SHEET 1 F 4 GLN B 3 GLN B 6 0 SHEET 2 F 4 VAL B 18 SER B 25 -1 O LYS B 23 N VAL B 5 SHEET 3 F 4 THR B 78 ILE B 83 -1 O LEU B 81 N ILE B 20 SHEET 4 F 4 PHE B 68 GLU B 73 -1 N SER B 71 O TYR B 80 SHEET 1 G 6 GLU B 10 LYS B 12 0 SHEET 2 G 6 THR B 113 VAL B 117 1 O LEU B 114 N GLU B 10 SHEET 3 G 6 ALA B 92 ARG B 98 -1 N ALA B 92 O VAL B 115 SHEET 4 G 6 MET B 34 GLN B 39 -1 N VAL B 37 O PHE B 95 SHEET 5 G 6 PHE B 45 ILE B 51 -1 O MET B 48 N TRP B 36 SHEET 6 G 6 PRO B 58 TYR B 60 -1 O THR B 59 N TRP B 50 SHEET 1 H 4 GLU B 10 LYS B 12 0 SHEET 2 H 4 THR B 113 VAL B 117 1 O LEU B 114 N GLU B 10 SHEET 3 H 4 ALA B 92 ARG B 98 -1 N ALA B 92 O VAL B 115 SHEET 4 H 4 TYR B 108 TRP B 109 -1 O TYR B 108 N ARG B 98 SHEET 1 I 4 SER B 126 LEU B 130 0 SHEET 2 I 4 MET B 141 TYR B 151 -1 O LYS B 149 N SER B 126 SHEET 3 I 4 LEU B 180 PRO B 190 -1 O VAL B 187 N LEU B 144 SHEET 4 I 4 VAL B 169 THR B 171 -1 N HIS B 170 O SER B 186 SHEET 1 J 4 SER B 126 LEU B 130 0 SHEET 2 J 4 MET B 141 TYR B 151 -1 O LYS B 149 N SER B 126 SHEET 3 J 4 LEU B 180 PRO B 190 -1 O VAL B 187 N LEU B 144 SHEET 4 J 4 VAL B 175 GLN B 177 -1 N VAL B 175 O THR B 182 SHEET 1 K 3 THR B 157 TRP B 160 0 SHEET 2 K 3 THR B 200 HIS B 205 -1 O ASN B 202 N THR B 159 SHEET 3 K 3 SER B 209 LYS B 214 -1 O LYS B 211 N VAL B 203 SSBOND 1 CYS A 21 CYS A 91 1555 1555 2.09 SSBOND 2 CYS A 142 CYS A 200 1555 1555 2.02 SSBOND 3 CYS B 22 CYS B 96 1555 1555 2.06 SSBOND 4 CYS B 146 CYS B 201 1555 1555 2.01 CISPEP 1 SER A 148 PRO A 149 0 -0.95 CISPEP 2 GLY B 100 ASN B 101 0 28.43 CISPEP 3 PHE B 152 PRO B 153 0 -3.02 CISPEP 4 GLU B 154 PRO B 155 0 2.46 CISPEP 5 TRP B 194 PRO B 195 0 10.89 CISPEP 6 ALA B 207 SER B 208 0 -26.85 SITE 1 AC1 4 GLN A 36 PHE A 65 ASP A 85 HOH A 570 SITE 1 AC2 3 SER B 35 TRP B 105 HOH B 526 CRYST1 78.068 121.815 42.012 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012809 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008209 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023803 0.00000