HEADER TRANSFERASE 19-JAN-12 4DDO TITLE CRYSTAL STRUCTURE OF 3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE II FROM TITLE 2 BURKHOLDERIA VIETNAMIENSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BUVIA.00113.B.A1; COMPND 5 EC: 2.3.1.179; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA VIETNAMIENSIS; SOURCE 3 ORGANISM_TAXID: 269482; SOURCE 4 STRAIN: G4/LMG 22486; SOURCE 5 GENE: BCEP1808_4002; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS SSGCID, 3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE II, STRUCTURAL KEYWDS 2 GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 13-SEP-23 4DDO 1 REMARK SEQADV LINK REVDAT 2 23-OCT-13 4DDO 1 JRNL REVDAT 1 23-MAY-12 4DDO 0 JRNL AUTH L.BAUGH,L.A.GALLAGHER,R.PATRAPUVICH,M.C.CLIFTON, JRNL AUTH 2 A.S.GARDBERG,T.E.EDWARDS,B.ARMOUR,D.W.BEGLEY,S.H.DIETERICH, JRNL AUTH 3 D.M.DRANOW,J.ABENDROTH,J.W.FAIRMAN,D.FOX,B.L.STAKER,I.PHAN, JRNL AUTH 4 A.GILLESPIE,R.CHOI,S.NAKAZAWA-HEWITT,M.T.NGUYEN,A.NAPULI, JRNL AUTH 5 L.BARRETT,G.W.BUCHKO,R.STACY,P.J.MYLER,L.J.STEWART,C.MANOIL, JRNL AUTH 6 W.C.VAN VOORHIS JRNL TITL COMBINING FUNCTIONAL AND STRUCTURAL GENOMICS TO SAMPLE THE JRNL TITL 2 ESSENTIAL BURKHOLDERIA STRUCTOME. JRNL REF PLOS ONE V. 8 53851 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23382856 JRNL DOI 10.1371/JOURNAL.PONE.0053851 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 29974 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1517 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1750 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 85 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3001 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 325 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.69 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.23000 REMARK 3 B22 (A**2) : 0.50000 REMARK 3 B33 (A**2) : -0.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.135 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.128 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.234 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3069 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2046 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4170 ; 1.520 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4980 ; 0.970 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 426 ; 6.028 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 117 ;35.369 ;23.162 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 454 ;11.418 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;18.625 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 473 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3570 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 627 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -10 A 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 3.1610 25.0680 17.9950 REMARK 3 T TENSOR REMARK 3 T11: 0.0459 T22: 0.0151 REMARK 3 T33: 0.0484 T12: -0.0165 REMARK 3 T13: 0.0019 T23: -0.0163 REMARK 3 L TENSOR REMARK 3 L11: 0.2356 L22: 0.4325 REMARK 3 L33: 0.9296 L12: 0.0500 REMARK 3 L13: 0.0104 L23: -0.0635 REMARK 3 S TENSOR REMARK 3 S11: -0.0295 S12: 0.0194 S13: -0.0245 REMARK 3 S21: -0.0934 S22: 0.0418 S23: -0.0033 REMARK 3 S31: -0.0019 S32: 0.0612 S33: -0.0123 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 4 REMARK 4 4DDO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000070198. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : RIGAKU VARIMAX REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29974 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : 0.07500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.1400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.50400 REMARK 200 R SYM FOR SHELL (I) : 0.50400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1W0I MODIFIED WITH CCP4 PROGRAM CHAINSAW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: QIAGEN JCSG-2 B5: 1M LICL, 100MM TRIS REMARK 280 PH 8, 20% PEG 6000, BUVIA.00113.B.A1 PS01317 AT 21.5MG/ML, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 290K, PH 8.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.59000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.59000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 28.41000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.66000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 28.41000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.66000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.59000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 28.41000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.66000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.59000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 28.41000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.66000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS A DIMER FORMED FROM THE MONOMER IN THE REMARK 300 ASYMMETRIC UNIT BY THE CRYSTALLOGRAPHIC OPERATIONS: -X, Y, -Z+0.5 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 65.59000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 ALA A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 MET A -12 REMARK 465 GLY A -11 REMARK 465 THR A -10 REMARK 465 LEU A -9 REMARK 465 GLU A -8 REMARK 465 ALA A -7 REMARK 465 GLN A -6 REMARK 465 THR A -5 REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASP A 424 REMARK 465 ARG A 425 REMARK 465 SER A 426 REMARK 465 ALA A 427 REMARK 465 GLU A 428 REMARK 465 ALA A 429 REMARK 465 HIS A 430 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 68 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 72 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 GLU A 74 CG CD OE1 OE2 REMARK 470 ARG A 76 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 123 CG CD1 CD2 REMARK 470 ARG A 133 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 215 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 262 CG CD NE CZ NH1 NH2 REMARK 470 SER A 423 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 796 O HOH A 883 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 162 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 162 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 167 84.79 -151.06 REMARK 500 ALA A 171 -135.76 54.45 REMARK 500 ALA A 201 85.78 -153.15 REMARK 500 PHE A 232 -7.99 71.88 REMARK 500 ASP A 237 27.45 -141.80 REMARK 500 TYR A 277 -64.29 -129.70 REMARK 500 ALA A 314 112.58 -28.13 REMARK 500 SER A 316 30.39 86.52 REMARK 500 ALA A 336 -122.33 -139.17 REMARK 500 LEU A 351 -115.98 58.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 500 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 311 OD1 REMARK 620 2 ASN A 311 O 70.6 REMARK 620 3 ALA A 312 O 71.8 68.0 REMARK 620 4 GLU A 358 OE1 89.6 155.2 92.1 REMARK 620 5 SER A 404 OG 82.2 74.0 139.2 119.2 REMARK 620 6 ASN A 405 O 167.0 97.8 98.9 99.9 100.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-BUVIA.00113.B RELATED DB: TARGETTRACK DBREF 4DDO A 1 430 UNP A4JL30 A4JL30_BURVG 1 430 SEQADV 4DDO MET A -20 UNP A4JL30 EXPRESSION TAG SEQADV 4DDO ALA A -19 UNP A4JL30 EXPRESSION TAG SEQADV 4DDO HIS A -18 UNP A4JL30 EXPRESSION TAG SEQADV 4DDO HIS A -17 UNP A4JL30 EXPRESSION TAG SEQADV 4DDO HIS A -16 UNP A4JL30 EXPRESSION TAG SEQADV 4DDO HIS A -15 UNP A4JL30 EXPRESSION TAG SEQADV 4DDO HIS A -14 UNP A4JL30 EXPRESSION TAG SEQADV 4DDO HIS A -13 UNP A4JL30 EXPRESSION TAG SEQADV 4DDO MET A -12 UNP A4JL30 EXPRESSION TAG SEQADV 4DDO GLY A -11 UNP A4JL30 EXPRESSION TAG SEQADV 4DDO THR A -10 UNP A4JL30 EXPRESSION TAG SEQADV 4DDO LEU A -9 UNP A4JL30 EXPRESSION TAG SEQADV 4DDO GLU A -8 UNP A4JL30 EXPRESSION TAG SEQADV 4DDO ALA A -7 UNP A4JL30 EXPRESSION TAG SEQADV 4DDO GLN A -6 UNP A4JL30 EXPRESSION TAG SEQADV 4DDO THR A -5 UNP A4JL30 EXPRESSION TAG SEQADV 4DDO GLN A -4 UNP A4JL30 EXPRESSION TAG SEQADV 4DDO GLY A -3 UNP A4JL30 EXPRESSION TAG SEQADV 4DDO PRO A -2 UNP A4JL30 EXPRESSION TAG SEQADV 4DDO GLY A -1 UNP A4JL30 EXPRESSION TAG SEQADV 4DDO SER A 0 UNP A4JL30 EXPRESSION TAG SEQRES 1 A 451 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 451 ALA GLN THR GLN GLY PRO GLY SER MET THR LEU ARG VAL SEQRES 3 A 451 VAL VAL THR GLY ILE GLY ILE VAL SER PRO LEU GLY CYS SEQRES 4 A 451 GLY LYS GLU LEU VAL TRP GLN ARG LEU ILE GLY GLY GLY SEQRES 5 A 451 SER GLY LEU ARG ARG LEU GLY ASP ASP ILE ALA GLY GLU SEQRES 6 A 451 LEU SER ALA LYS VAL GLY GLY THR VAL GLN ASP VAL ALA SEQRES 7 A 451 GLU ASP PRO GLU GLY GLY PHE ASP PRO GLU ARG SER VAL SEQRES 8 A 451 PRO HIS LYS GLU LEU ARG LYS MET ASP ARG PHE ILE GLN SEQRES 9 A 451 MET ALA MET VAL ALA ALA ASP GLU ALA LEU ALA GLU ALA SEQRES 10 A 451 GLY TRP ALA PRO GLU ALA GLU GLN GLN ARG GLU ARG THR SEQRES 11 A 451 ALA THR VAL VAL ALA SER GLY ILE GLY GLY PHE PRO GLY SEQRES 12 A 451 LEU ALA GLU ALA VAL ARG ILE GLY GLU THR ARG GLY VAL SEQRES 13 A 451 ARG ARG LEU SER PRO PHE THR ILE PRO PHE PHE LEU SER SEQRES 14 A 451 ASN LEU ALA ALA GLY GLN ILE SER ILE LYS HIS ARG PHE SEQRES 15 A 451 ARG GLY PRO LEU GLY CYS PRO VAL THR ALA CYS ALA ALA SEQRES 16 A 451 SER VAL GLN ALA ILE GLY ASP ALA MET ARG MET ILE ARG SEQRES 17 A 451 THR GLY GLU ALA ASP VAL VAL LEU ALA GLY GLY ALA GLU SEQRES 18 A 451 ALA ALA PHE ASP LYS VAL SER LEU GLY GLY PHE ALA ALA SEQRES 19 A 451 ALA ARG ALA LEU SER THR GLY PHE SER GLU GLU PRO VAL SEQRES 20 A 451 ARG ALA SER ARG PRO PHE ASP ARG ASP ARG ASP GLY PHE SEQRES 21 A 451 VAL MET GLY GLU GLY ALA ALA MET VAL VAL VAL GLU SER SEQRES 22 A 451 LEU ASP HIS ALA LEU ALA ARG GLY ALA ARG PRO ILE ALA SEQRES 23 A 451 GLU ILE ILE GLY TYR GLY THR THR ALA ASP ALA TYR HIS SEQRES 24 A 451 MET THR ALA GLY PRO ASP ASP GLY SER GLY ALA MET ARG SEQRES 25 A 451 ALA MET LYS LEU ALA LEU ARG MET GLY ASP VAL ALA PRO SEQRES 26 A 451 GLU GLN VAL ASP TYR VAL ASN ALA HIS ALA THR SER THR SEQRES 27 A 451 PRO VAL GLY ASP ALA GLY GLU ILE GLU ALA LEU LYS THR SEQRES 28 A 451 VAL PHE GLY VAL GLY ALA GLY PRO ALA ILE SER SER THR SEQRES 29 A 451 LYS SER ALA THR GLY HIS LEU LEU GLY ALA ALA GLY ALA SEQRES 30 A 451 ILE GLU ALA ALA PHE SER ILE LEU ALA LEU ARG ASP GLY SEQRES 31 A 451 VAL LEU PRO GLY THR LEU ASN LEU GLU HIS PRO ASP PRO SEQRES 32 A 451 ALA ALA ASP GLY LEU ASP LEU ILE GLY PRO ALA ALA ARG SEQRES 33 A 451 HIS VAL PRO VAL GLU ILE ALA LEU SER ASN GLY PHE GLY SEQRES 34 A 451 PHE GLY GLY VAL ASN ALA SER VAL LEU PHE ARG ARG TYR SEQRES 35 A 451 PRO SER ASP ARG SER ALA GLU ALA HIS HET NA A 500 1 HETNAM NA SODIUM ION FORMUL 2 NA NA 1+ FORMUL 3 HOH *325(H2 O) HELIX 1 1 GLY A 19 GLY A 29 1 11 HELIX 2 2 GLY A 38 GLY A 43 1 6 HELIX 3 3 ASP A 65 SER A 69 5 5 HELIX 4 4 PRO A 71 ARG A 76 1 6 HELIX 5 5 ASP A 79 GLY A 97 1 19 HELIX 6 6 ALA A 102 GLU A 107 1 6 HELIX 7 7 GLY A 119 ARG A 133 1 15 HELIX 8 8 GLY A 134 LEU A 138 5 5 HELIX 9 9 PHE A 141 LEU A 147 1 7 HELIX 10 10 ASN A 149 ARG A 160 1 12 HELIX 11 11 THR A 170 CYS A 172 5 3 HELIX 12 12 ALA A 173 THR A 188 1 16 HELIX 13 13 ASP A 204 ALA A 214 1 11 HELIX 14 14 GLU A 224 ALA A 228 5 5 HELIX 15 15 LEU A 253 ARG A 259 1 7 HELIX 16 16 GLY A 286 ASP A 301 1 16 HELIX 17 17 ALA A 303 VAL A 307 5 5 HELIX 18 18 THR A 317 GLY A 333 1 17 HELIX 19 19 THR A 343 GLY A 348 1 6 HELIX 20 20 LEU A 350 GLY A 352 5 3 HELIX 21 21 ALA A 353 GLY A 369 1 17 HELIX 22 22 ASP A 381 ASP A 385 5 5 SHEET 1 A 6 GLY A 17 CYS A 18 0 SHEET 2 A 6 VAL A 5 SER A 14 -1 N SER A 14 O GLY A 17 SHEET 3 A 6 GLY A 244 SER A 252 -1 O ALA A 245 N VAL A 13 SHEET 4 A 6 VAL A 193 GLU A 200 -1 N GLU A 200 O GLY A 244 SHEET 5 A 6 THR A 109 ALA A 114 1 N ALA A 114 O GLY A 197 SHEET 6 A 6 LEU A 165 GLY A 166 1 O GLY A 166 N THR A 111 SHEET 1 B 8 GLY A 17 CYS A 18 0 SHEET 2 B 8 VAL A 5 SER A 14 -1 N SER A 14 O GLY A 17 SHEET 3 B 8 ALA A 265 ALA A 274 -1 O ILE A 267 N VAL A 5 SHEET 4 B 8 VAL A 412 ARG A 420 -1 O ARG A 419 N GLU A 266 SHEET 5 B 8 ILE A 401 GLY A 408 -1 N ALA A 402 O PHE A 418 SHEET 6 B 8 TYR A 309 ASN A 311 1 N ASN A 311 O LEU A 403 SHEET 7 B 8 ALA A 339 SER A 341 1 O ALA A 339 N VAL A 310 SHEET 8 B 8 ASP A 388 LEU A 389 1 O ASP A 388 N ILE A 340 SHEET 1 C 2 LEU A 34 ARG A 36 0 SHEET 2 C 2 VAL A 49 GLY A 51 -1 O GLY A 50 N ARG A 35 SHEET 1 D 2 VAL A 370 LEU A 371 0 SHEET 2 D 2 ARG A 395 HIS A 396 -1 O ARG A 395 N LEU A 371 LINK OD1 ASN A 311 NA NA A 500 1555 1555 2.83 LINK O ASN A 311 NA NA A 500 1555 1555 2.86 LINK O ALA A 312 NA NA A 500 1555 1555 3.13 LINK OE1 GLU A 358 NA NA A 500 1555 1555 2.69 LINK OG SER A 404 NA NA A 500 1555 1555 3.03 LINK O ASN A 405 NA NA A 500 1555 1555 2.76 CISPEP 1 TYR A 421 PRO A 422 0 1.95 SITE 1 AC1 5 ASN A 311 ALA A 312 GLU A 358 SER A 404 SITE 2 AC1 5 ASN A 405 CRYST1 56.820 101.320 131.180 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017599 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009870 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007623 0.00000