HEADER TRANSFERASE 20-JAN-12 4DE7 TITLE CRYSTAL STRUCTURE OF GLUCOSYL-3-PHOSPHOGLYCERATE SYNTHASE FROM TITLE 2 MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH MG2+ AND URIDINE- TITLE 3 DIPHOSPHATE (UDP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSYL-3-PHOSPHOGLYCERATE SYNTHASE (GPGS); COMPND 3 CHAIN: A; COMPND 4 EC: 2.4.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: GPGS, MT1246, RV1208; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A-GPGS KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.ALBESA-JOVE,S.URRESTI,M.VAN DER WOERD,M.E.GUERIN REVDAT 4 28-FEB-24 4DE7 1 REMARK SEQADV REVDAT 3 09-JAN-13 4DE7 1 JRNL REVDAT 2 13-JUN-12 4DE7 1 JRNL REVDAT 1 06-JUN-12 4DE7 0 JRNL AUTH S.URRESTI,D.ALBESA-JOVE,F.SCHAEFFER,H.T.PHAM,D.KAUR,P.GEST, JRNL AUTH 2 M.J.VAN DER WOERD,A.CARRERAS-GONZALEZ,S.LOPEZ-FERNANDEZ, JRNL AUTH 3 P.M.ALZARI,P.J.BRENNAN,M.JACKSON,M.E.GUERIN JRNL TITL MECHANISTIC INSIGHTS INTO THE RETAINING JRNL TITL 2 GLUCOSYL-3-PHOSPHOGLYCERATE SYNTHASE FROM MYCOBACTERIA. JRNL REF J.BIOL.CHEM. V. 287 24649 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22637481 JRNL DOI 10.1074/JBC.M112.368191 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.2_869) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.460 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 12193 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 585 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.0801 - 4.7507 1.00 2974 139 0.2009 0.2150 REMARK 3 2 4.7507 - 3.7718 1.00 2955 141 0.2158 0.2360 REMARK 3 3 3.7718 - 3.2953 1.00 2908 157 0.2418 0.2728 REMARK 3 4 3.2953 - 2.9941 0.94 2771 148 0.2994 0.2993 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 38.27 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.850 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 68.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.42030 REMARK 3 B22 (A**2) : 2.42030 REMARK 3 B33 (A**2) : -4.84070 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2196 REMARK 3 ANGLE : 0.975 3013 REMARK 3 CHIRALITY : 0.057 364 REMARK 3 PLANARITY : 0.009 385 REMARK 3 DIHEDRAL : 12.614 807 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: AUTHORS STATE THE FOLLOWING ON THE REMARK 3 DENSITY ON UDP. THE DENSITY IS VERY LOW, BUT WE DO BELIEVE THE REMARK 3 LIGAND IS PRESENT. WE THINK THAT THE LOW OCCUPANCY AND THE REMARK 3 PARTIAL DISORDER OF UDP MOLECULE RESULTS IN VERY WEEK ELECTRON REMARK 3 DENSITY. BOTH, THE ALPHA- AND BETA-PHOSPHATES OF UDP ARE REMARK 3 DISORDERED, AND NO ELECTRON DENSITY IS VISIBLE FOR THEM. WE REMARK 3 BELIEVE THE DISORDER OF PHOSPHATE GROUPS IS DUE TO THE ABSENCE REMARK 3 OF DIVALENT CATION BOND TO THE STRUCTURE, WHICH USUALLY REMARK 3 COORDINATES BETWEEN THE PHOSPHATE GROUPS AND THE ENZYME. REMARK 3 COORDINATION OF THE DIVALENT CATION IS PH DEPENDENT, AT PH < 6 REMARK 3 THE RESIDUE HIS258 IS FOUND PROTONATED, AND IS UNABLE TO REMARK 3 COORDINATE DIVALENT CATIONS. WE BELIEVE THAT IS WHAT HAPPENS IN REMARK 3 THIS CASE, RESULTING IN PARTIAL DISORDER OF UDP AND LOW REMARK 3 OCCUPANCY. NONETHELESS, WEEK ELECTRON DENSITY IS FOUND FOR THE REMARK 3 URIDINE MOIETY, SO WE FELL IT IS STILL INFORMATIVE TO INCLUDE IT REMARK 3 IN THE STRUCTURE. REMARK 4 REMARK 4 4DE7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000070217. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK SI(111) SAGITALLY REMARK 200 FOCUSED MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NOIR-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12217 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 41.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.220 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.08 REMARK 200 R MERGE FOR SHELL (I) : 0.41300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 MM MGCL2, 5MM UDP, 1.5M NACL, REMARK 280 10%(V/V) ETHANOL, TRIS-HCL PH 8.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 49.42500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 49.42500 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.82000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 49.42500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.91000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 49.42500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 95.73000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 49.42500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.42500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 63.82000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 49.42500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 95.73000 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 49.42500 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 31.91000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ALA A 3 REMARK 465 SER A 4 REMARK 465 GLU A 5 REMARK 465 LEU A 6 REMARK 465 VAL A 7 REMARK 465 ALA A 8 REMARK 465 GLY A 9 REMARK 465 ASP A 10 REMARK 465 LEU A 11 REMARK 465 ALA A 12 REMARK 465 GLY A 13 REMARK 465 GLY A 14 REMARK 465 ARG A 15 REMARK 465 ALA A 16 REMARK 465 PRO A 17 REMARK 465 GLY A 18 REMARK 465 ALA A 19 REMARK 465 LEU A 20 REMARK 465 ARG A 167 REMARK 465 PRO A 168 REMARK 465 LEU A 169 REMARK 465 GLN A 170 REMARK 465 VAL A 171 REMARK 465 SER A 172 REMARK 465 ASP A 173 REMARK 465 VAL A 174 REMARK 465 THR A 175 REMARK 465 SER A 176 REMARK 465 GLY A 177 REMARK 465 VAL A 178 REMARK 465 CYS A 179 REMARK 465 ALA A 180 REMARK 465 THR A 181 REMARK 465 GLY A 182 REMARK 465 GLY A 297 REMARK 465 PRO A 298 REMARK 465 ASP A 299 REMARK 465 ASP A 300 REMARK 465 SER A 301 REMARK 465 PRO A 323 REMARK 465 ARG A 324 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 22 CG CD1 CD2 REMARK 470 ARG A 28 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 35 CG CD OE1 OE2 REMARK 470 ARG A 97 CZ NH1 NH2 REMARK 470 GLU A 156 CG CD OE1 OE2 REMARK 470 ARG A 166 CD NE CZ NH1 NH2 REMARK 470 ARG A 259 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 265 CG CD OE1 OE2 REMARK 470 LEU A 294 CG CD1 CD2 REMARK 470 ASP A 302 CG OD1 OD2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 59 CA CB CG CD OE1 OE2 REMARK 480 SER A 126 CA CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 28 117.11 -169.35 REMARK 500 ASP A 85 -153.74 -97.98 REMARK 500 LEU A 105 78.22 -161.98 REMARK 500 ASN A 139 77.09 42.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 UDP A 401 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UDP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DDZ RELATED DB: PDB REMARK 900 RELATED ID: 4DEC RELATED DB: PDB DBREF 4DE7 A 1 324 UNP O05309 O05309_MYCTU 1 324 SEQADV 4DE7 MET A -19 UNP O05309 EXPRESSION TAG SEQADV 4DE7 GLY A -18 UNP O05309 EXPRESSION TAG SEQADV 4DE7 SER A -17 UNP O05309 EXPRESSION TAG SEQADV 4DE7 SER A -16 UNP O05309 EXPRESSION TAG SEQADV 4DE7 HIS A -15 UNP O05309 EXPRESSION TAG SEQADV 4DE7 HIS A -14 UNP O05309 EXPRESSION TAG SEQADV 4DE7 HIS A -13 UNP O05309 EXPRESSION TAG SEQADV 4DE7 HIS A -12 UNP O05309 EXPRESSION TAG SEQADV 4DE7 HIS A -11 UNP O05309 EXPRESSION TAG SEQADV 4DE7 HIS A -10 UNP O05309 EXPRESSION TAG SEQADV 4DE7 SER A -9 UNP O05309 EXPRESSION TAG SEQADV 4DE7 SER A -8 UNP O05309 EXPRESSION TAG SEQADV 4DE7 GLY A -7 UNP O05309 EXPRESSION TAG SEQADV 4DE7 LEU A -6 UNP O05309 EXPRESSION TAG SEQADV 4DE7 VAL A -5 UNP O05309 EXPRESSION TAG SEQADV 4DE7 PRO A -4 UNP O05309 EXPRESSION TAG SEQADV 4DE7 ARG A -3 UNP O05309 EXPRESSION TAG SEQADV 4DE7 GLY A -2 UNP O05309 EXPRESSION TAG SEQADV 4DE7 SER A -1 UNP O05309 EXPRESSION TAG SEQADV 4DE7 HIS A 0 UNP O05309 EXPRESSION TAG SEQRES 1 A 344 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 344 LEU VAL PRO ARG GLY SER HIS MET THR ALA SER GLU LEU SEQRES 3 A 344 VAL ALA GLY ASP LEU ALA GLY GLY ARG ALA PRO GLY ALA SEQRES 4 A 344 LEU PRO LEU ASP THR THR TRP HIS ARG PRO GLY TRP THR SEQRES 5 A 344 ILE GLY GLU LEU GLU ALA ALA LYS ALA GLY ARG THR ILE SEQRES 6 A 344 SER VAL VAL LEU PRO ALA LEU ASN GLU GLU ALA THR ILE SEQRES 7 A 344 GLU SER VAL ILE ASP SER ILE SER PRO LEU VAL ASP GLY SEQRES 8 A 344 LEU VAL ASP GLU LEU ILE VAL LEU ASP SER GLY SER THR SEQRES 9 A 344 ASP ASP THR GLU ILE ARG ALA ILE ALA SER GLY ALA ARG SEQRES 10 A 344 VAL VAL SER ARG GLU GLN ALA LEU PRO GLU VAL PRO VAL SEQRES 11 A 344 ARG PRO GLY LYS GLY GLU ALA LEU TRP ARG SER LEU ALA SEQRES 12 A 344 ALA THR SER GLY ASP ILE VAL VAL PHE ILE ASP SER ASP SEQRES 13 A 344 LEU ILE ASN PRO HIS PRO LEU PHE VAL PRO TRP LEU VAL SEQRES 14 A 344 GLY PRO LEU LEU THR GLY GLU GLY ILE GLN LEU VAL LYS SEQRES 15 A 344 SER PHE TYR ARG ARG PRO LEU GLN VAL SER ASP VAL THR SEQRES 16 A 344 SER GLY VAL CYS ALA THR GLY GLY GLY ARG VAL THR GLU SEQRES 17 A 344 LEU VAL ALA ARG PRO LEU LEU ALA ALA LEU ARG PRO GLU SEQRES 18 A 344 LEU GLY CYS VAL LEU GLN PRO LEU SER GLY GLU TYR ALA SEQRES 19 A 344 ALA SER ARG GLU LEU LEU THR SER LEU PRO PHE ALA PRO SEQRES 20 A 344 GLY TYR GLY VAL GLU ILE GLY LEU LEU ILE ASP THR PHE SEQRES 21 A 344 ASP ARG LEU GLY LEU ASP ALA ILE ALA GLN VAL ASN LEU SEQRES 22 A 344 GLY VAL ARG ALA HIS ARG ASN ARG PRO LEU ASP GLU LEU SEQRES 23 A 344 GLY ALA MET SER ARG GLN VAL ILE ALA THR LEU LEU SER SEQRES 24 A 344 ARG CYS GLY ILE PRO ASP SER GLY VAL GLY LEU THR GLN SEQRES 25 A 344 PHE LEU PRO GLY GLY PRO ASP ASP SER ASP TYR THR ARG SEQRES 26 A 344 HIS THR TRP PRO VAL SER LEU VAL ASP ARG PRO PRO MET SEQRES 27 A 344 LYS VAL MET ARG PRO ARG HET UDP A 401 16 HET GOL A 402 6 HET GOL A 403 6 HETNAM UDP URIDINE-5'-DIPHOSPHATE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 UDP C9 H14 N2 O12 P2 FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *22(H2 O) HELIX 1 1 THR A 32 LYS A 40 1 9 HELIX 2 2 THR A 57 SER A 64 1 8 HELIX 3 3 ILE A 65 VAL A 69 5 5 HELIX 4 4 ASP A 86 SER A 94 1 9 HELIX 5 5 ARG A 101 LEU A 105 1 5 HELIX 6 6 GLY A 113 LEU A 122 1 10 HELIX 7 7 ALA A 123 THR A 125 5 3 HELIX 8 8 LEU A 143 GLY A 155 1 13 HELIX 9 9 GLY A 184 VAL A 190 1 7 HELIX 10 10 VAL A 190 ARG A 199 1 10 HELIX 11 11 PRO A 200 VAL A 205 5 6 HELIX 12 12 ARG A 217 THR A 221 1 5 HELIX 13 13 PRO A 227 TYR A 229 5 3 HELIX 14 14 GLY A 230 GLY A 244 1 15 HELIX 15 15 PRO A 262 CYS A 281 1 20 HELIX 16 16 PRO A 317 ARG A 322 5 6 SHEET 1 A 8 THR A 24 TRP A 26 0 SHEET 2 A 8 ILE A 248 VAL A 255 1 O ASN A 252 N TRP A 26 SHEET 3 A 8 LEU A 160 ARG A 166 1 N PHE A 164 O LEU A 253 SHEET 4 A 8 TYR A 213 SER A 216 -1 O ALA A 214 N VAL A 161 SHEET 5 A 8 ILE A 129 PHE A 132 -1 N VAL A 130 O ALA A 215 SHEET 6 A 8 ILE A 45 ALA A 51 1 N VAL A 48 O VAL A 131 SHEET 7 A 8 GLU A 75 ASP A 80 1 O ILE A 77 N VAL A 47 SHEET 8 A 8 ARG A 97 SER A 100 1 O VAL A 99 N VAL A 78 SHEET 1 B 2 THR A 291 LEU A 294 0 SHEET 2 B 2 THR A 304 THR A 307 -1 O THR A 304 N LEU A 294 SITE 1 AC1 9 PRO A 50 ALA A 51 LEU A 52 GLU A 54 SITE 2 AC1 9 SER A 81 LYS A 114 SER A 135 ASP A 136 SITE 3 AC1 9 HOH A 510 SITE 1 AC2 5 GLY A 184 THR A 187 ARG A 256 HIS A 258 SITE 2 AC2 5 ASN A 260 SITE 1 AC3 3 ARG A 97 VAL A 98 GLN A 103 CRYST1 98.850 98.850 127.640 90.00 90.00 90.00 I 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010116 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010116 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007835 0.00000