HEADER LYASE 20-JAN-12 4DEL TITLE ACTIVE SITE LOOP DYNAMICS OF A CLASS IIA FRUCTOSE 1,6-BISPHOSPHATE TITLE 2 ALDOLASE FROM M. TUBERCULOSIS CAVEAT 4DEL VAL A8 AND TYR A9 ARE NOT PROPERLY LINKED COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRUCTOSE-BISPHOSPHATE ALDOLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FBP ALDOLASE, FBPA, FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE; COMPND 5 EC: 4.1.2.13; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: FBA, MT0379, MTCY13E10.25C, RV0363C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET17B KEYWDS CLASS II FRUCTOSE-1, 6-BISPHOSPHATE ALDOLASE, ZINC ENZYME, KEYWDS 2 DIHYDROXYACETONE, GLYCERALDEHYDE-3-PHOSPHATE, ALDOL CONDENSATION, KEYWDS 3 GLYCOLYSIS, LYASE, METAL-BINDING, PHOSPHOGLYCOLOHYDROXAMATE EXPDTA X-RAY DIFFRACTION AUTHOR S.D.PEGAN,A.D.MESECAR REVDAT 3 13-SEP-23 4DEL 1 REMARK SEQADV LINK REVDAT 2 26-JUN-13 4DEL 1 JRNL REVDAT 1 23-JAN-13 4DEL 0 JRNL AUTH S.D.PEGAN,K.RUKSEREE,G.C.CAPODAGLI,E.A.BAKER,O.KRASNYKH, JRNL AUTH 2 S.G.FRANZBLAU,A.D.MESECAR JRNL TITL ACTIVE SITE LOOP DYNAMICS OF A CLASS IIA FRUCTOSE JRNL TITL 2 1,6-BISPHOSPHATE ALDOLASE FROM MYCOBACTERIUM TUBERCULOSIS. JRNL REF BIOCHEMISTRY V. 52 912 2013 JRNL REFN ISSN 0006-2960 JRNL PMID 23298222 JRNL DOI 10.1021/BI300928U REMARK 2 REMARK 2 RESOLUTION. 1.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 78207 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3910 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.58 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4359 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.26 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 227 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2583 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 513 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.52000 REMARK 3 B22 (A**2) : -1.55000 REMARK 3 B33 (A**2) : -0.97000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.072 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.071 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2838 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3869 ; 1.194 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 382 ;18.029 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 120 ;36.994 ;25.250 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 460 ;12.342 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;18.847 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 426 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2188 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1478 ; 0.211 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1981 ; 0.302 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 377 ; 0.112 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.473 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 107 ; 0.198 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 26 ; 0.143 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 1 ; 0.027 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1808 ; 0.564 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2914 ; 1.018 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1030 ; 1.699 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 948 ; 2.835 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4DEL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000070231. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : SI 220 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78320 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.580 REMARK 200 RESOLUTION RANGE LOW (A) : 93.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.27900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 3EKL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26% PEG 300, 0.1 M SODIUM ACETATE, 2MM REMARK 280 PHOSPHOGLYCOLOHYDROXAMATE, PH 4.8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 30.89850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.80250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 82.05050 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 30.89850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.80250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 82.05050 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 30.89850 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 59.80250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 82.05050 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 30.89850 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 59.80250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 82.05050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -403.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 119.60500 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 119.60500 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 347 REMARK 465 HIS A 348 REMARK 465 HIS A 349 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 VAL A 8 N CA C O CB CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND1 HIS A 344 ZN ZN A 403 1.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 7 C VAL A 8 N 0.146 REMARK 500 VAL A 8 C TYR A 9 N -0.296 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 87 40.46 -87.30 REMARK 500 HIS A 96 109.13 -19.75 REMARK 500 TYR A 105 -81.70 -141.99 REMARK 500 ASP A 170 -124.58 63.30 REMARK 500 ASN A 177 -157.45 -148.21 REMARK 500 ASP A 276 -61.42 -131.40 REMARK 500 ASP A 276 -61.42 -137.81 REMARK 500 HIS A 344 52.11 39.26 REMARK 500 HIS A 344 14.27 58.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 96 NE2 REMARK 620 2 HIS A 212 NE2 94.1 REMARK 620 3 HIS A 252 ND1 90.2 133.4 REMARK 620 4 PGH A 404 O2 96.6 114.9 110.7 REMARK 620 5 PGH A 404 O1 171.0 87.4 95.2 74.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 211 O REMARK 620 2 GLY A 213 O 101.1 REMARK 620 3 GLY A 253 O 87.8 171.1 REMARK 620 4 SER A 255 O 156.2 87.7 83.9 REMARK 620 5 PGH A 404 O2P 95.5 88.3 91.4 106.9 REMARK 620 6 HOH A 588 O 72.2 89.9 92.3 85.8 167.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 344 ND1 REMARK 620 2 HIS A 346 NE2 124.2 REMARK 620 3 HOH A 992 O 75.2 84.4 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGH A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P6G A 406 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EKL RELATED DB: PDB REMARK 900 RELATED ID: 3EKZ RELATED DB: PDB REMARK 900 RELATED ID: 3ELF RELATED DB: PDB REMARK 900 RELATED ID: 4DEF RELATED DB: PDB DBREF 4DEL A 1 344 UNP P67475 ALF_MYCTU 1 344 SEQADV 4DEL HIS A 345 UNP P67475 EXPRESSION TAG SEQADV 4DEL HIS A 346 UNP P67475 EXPRESSION TAG SEQADV 4DEL HIS A 347 UNP P67475 EXPRESSION TAG SEQADV 4DEL HIS A 348 UNP P67475 EXPRESSION TAG SEQADV 4DEL HIS A 349 UNP P67475 EXPRESSION TAG SEQRES 1 A 349 MET PRO ILE ALA THR PRO GLU VAL TYR ALA GLU MET LEU SEQRES 2 A 349 GLY GLN ALA LYS GLN ASN SER TYR ALA PHE PRO ALA ILE SEQRES 3 A 349 ASN CYS THR SER SER GLU THR VAL ASN ALA ALA ILE LYS SEQRES 4 A 349 GLY PHE ALA ASP ALA GLY SER ASP GLY ILE ILE GLN PHE SEQRES 5 A 349 SER THR GLY GLY ALA GLU PHE GLY SER GLY LEU GLY VAL SEQRES 6 A 349 LYS ASP MET VAL THR GLY ALA VAL ALA LEU ALA GLU PHE SEQRES 7 A 349 THR HIS VAL ILE ALA ALA LYS TYR PRO VAL ASN VAL ALA SEQRES 8 A 349 LEU HIS THR ASP HIS CYS PRO LYS ASP LYS LEU ASP SER SEQRES 9 A 349 TYR VAL ARG PRO LEU LEU ALA ILE SER ALA GLN ARG VAL SEQRES 10 A 349 SER LYS GLY GLY ASN PRO LEU PHE GLN SER HIS MET TRP SEQRES 11 A 349 ASP GLY SER ALA VAL PRO ILE ASP GLU ASN LEU ALA ILE SEQRES 12 A 349 ALA GLN GLU LEU LEU LYS ALA ALA ALA ALA ALA LYS ILE SEQRES 13 A 349 ILE LEU GLU ILE GLU ILE GLY VAL VAL GLY GLY GLU GLU SEQRES 14 A 349 ASP GLY VAL ALA ASN GLU ILE ASN GLU LYS LEU TYR THR SEQRES 15 A 349 SER PRO GLU ASP PHE GLU LYS THR ILE GLU ALA LEU GLY SEQRES 16 A 349 ALA GLY GLU HIS GLY LYS TYR LEU LEU ALA ALA THR PHE SEQRES 17 A 349 GLY ASN VAL HIS GLY VAL TYR LYS PRO GLY ASN VAL LYS SEQRES 18 A 349 LEU ARG PRO ASP ILE LEU ALA GLN GLY GLN GLN VAL ALA SEQRES 19 A 349 ALA ALA LYS LEU GLY LEU PRO ALA ASP ALA LYS PRO PHE SEQRES 20 A 349 ASP PHE VAL PHE HIS GLY GLY SER GLY SER LEU LYS SER SEQRES 21 A 349 GLU ILE GLU GLU ALA LEU ARG TYR GLY VAL VAL LYS MET SEQRES 22 A 349 ASN VAL ASP THR ASP THR GLN TYR ALA PHE THR ARG PRO SEQRES 23 A 349 ILE ALA GLY HIS MET PHE THR ASN TYR ASP GLY VAL LEU SEQRES 24 A 349 LYS VAL ASP GLY GLU VAL GLY VAL LYS LYS VAL TYR ASP SEQRES 25 A 349 PRO ARG SER TYR LEU LYS LYS ALA GLU ALA SER MET SER SEQRES 26 A 349 GLN ARG VAL VAL GLN ALA CYS ASN ASP LEU HIS CYS ALA SEQRES 27 A 349 GLY LYS SER LEU THR HIS HIS HIS HIS HIS HIS HET NA A 401 1 HET ZN A 402 1 HET ZN A 403 1 HET PGH A 404 10 HET ACT A 405 4 HET P6G A 406 19 HETNAM NA SODIUM ION HETNAM ZN ZINC ION HETNAM PGH PHOSPHOGLYCOLOHYDROXAMIC ACID HETNAM ACT ACETATE ION HETNAM P6G HEXAETHYLENE GLYCOL HETSYN P6G POLYETHYLENE GLYCOL PEG400 FORMUL 2 NA NA 1+ FORMUL 3 ZN 2(ZN 2+) FORMUL 5 PGH C2 H6 N O6 P FORMUL 6 ACT C2 H3 O2 1- FORMUL 7 P6G C12 H26 O7 FORMUL 8 HOH *513(H2 O) HELIX 1 1 THR A 5 ASN A 19 1 15 HELIX 2 2 SER A 30 ALA A 44 1 15 HELIX 3 3 SER A 53 SER A 61 1 9 HELIX 4 4 ASP A 67 ALA A 84 1 18 HELIX 5 5 PRO A 98 SER A 104 5 7 HELIX 6 6 TYR A 105 LYS A 119 1 15 HELIX 7 7 PRO A 136 ALA A 154 1 19 HELIX 8 8 ASN A 177 TYR A 181 5 5 HELIX 9 9 SER A 183 GLY A 195 1 13 HELIX 10 10 PRO A 224 GLY A 239 1 16 HELIX 11 11 LEU A 258 TYR A 268 1 11 HELIX 12 12 ASP A 276 ASN A 294 1 19 HELIX 13 13 ASN A 294 LEU A 299 1 6 HELIX 14 14 VAL A 307 ASP A 312 1 6 HELIX 15 15 ASP A 312 LEU A 335 1 24 SHEET 1 A 9 PHE A 23 ASN A 27 0 SHEET 2 A 9 GLY A 48 PHE A 52 1 O ILE A 49 N ILE A 26 SHEET 3 A 9 VAL A 90 THR A 94 1 O ALA A 91 N ILE A 50 SHEET 4 A 9 SER A 127 TRP A 130 1 N SER A 127 O LEU A 92 SHEET 5 A 9 ILE A 157 ILE A 162 1 O GLU A 159 N TRP A 130 SHEET 6 A 9 TYR A 202 ALA A 206 1 O ALA A 205 N ILE A 160 SHEET 7 A 9 PHE A 249 PHE A 251 1 O VAL A 250 N LEU A 204 SHEET 8 A 9 VAL A 270 VAL A 275 1 O LYS A 272 N PHE A 251 SHEET 9 A 9 PHE A 23 ASN A 27 1 N ALA A 25 O VAL A 275 SHEET 1 B 2 GLY A 167 GLU A 169 0 SHEET 2 B 2 VAL A 172 ASN A 174 -1 O ASN A 174 N GLY A 167 LINK NE2 HIS A 96 ZN ZN A 402 1555 1555 2.14 LINK O VAL A 211 NA NA A 401 1555 1555 2.71 LINK NE2 HIS A 212 ZN ZN A 402 1555 1555 2.08 LINK O GLY A 213 NA NA A 401 1555 1555 2.32 LINK ND1 HIS A 252 ZN ZN A 402 1555 1555 2.09 LINK O GLY A 253 NA NA A 401 1555 1555 2.54 LINK O SER A 255 NA NA A 401 1555 1555 2.49 LINK ND1BHIS A 344 ZN ZN A 403 1555 1555 2.55 LINK NE2 HIS A 346 ZN ZN A 403 1555 1555 2.10 LINK NA NA A 401 O2P PGH A 404 1555 1555 2.52 LINK NA NA A 401 O HOH A 588 1555 1555 2.31 LINK ZN ZN A 402 O2 PGH A 404 1555 1555 2.07 LINK ZN ZN A 402 O1 PGH A 404 1555 1555 2.35 LINK ZN ZN A 403 O HOH A 992 1555 1555 2.51 SITE 1 AC1 6 VAL A 211 GLY A 213 GLY A 253 SER A 255 SITE 2 AC1 6 PGH A 404 HOH A 588 SITE 1 AC2 4 HIS A 96 HIS A 212 HIS A 252 PGH A 404 SITE 1 AC3 5 GLU A 198 HIS A 199 HIS A 344 HIS A 346 SITE 2 AC3 5 HOH A 992 SITE 1 AC4 17 ASN A 27 ASP A 95 HIS A 96 HIS A 212 SITE 2 AC4 17 GLY A 213 HIS A 252 GLY A 253 GLY A 254 SITE 3 AC4 17 SER A 255 ASN A 274 VAL A 275 ASP A 276 SITE 4 AC4 17 THR A 277 NA A 401 ZN A 402 HOH A 557 SITE 5 AC4 17 HOH A 823 SITE 1 AC5 8 LEU A 13 GLY A 14 LYS A 17 LYS A 201 SITE 2 AC5 8 ASP A 248 P6G A 406 HOH A 829 HOH A 866 SITE 1 AC6 14 ALA A 10 GLU A 11 ASP A 138 LYS A 189 SITE 2 AC6 14 ALA A 196 GLY A 197 LYS A 201 TYR A 202 SITE 3 AC6 14 ACT A 405 HOH A 646 HOH A 866 HOH A 935 SITE 4 AC6 14 HOH A 960 HOH A 969 CRYST1 61.797 119.605 164.101 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016182 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008361 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006094 0.00000