HEADER HYDROLASE 23-JAN-12 4DFD TITLE CRYSTAL STRUCTURE OF HAD FAMILY ENZYME BT-2542 (TARGET EFI-501088) TITLE 2 FROM BACTEROIDES THETAIOTAOMICRON, MAGNESIUM COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE HALOACID DEHALOGENASE-LIKE HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 818; SOURCE 4 GENE: BT_2542; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET KEYWDS HYDROLASE, MAGNESIUM BINDING SITE, ENZYME FUNCTION INITIATIVE, KEYWDS 2 STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR Y.PATSKOVSKY,R.TORO,R.BHOSLE,B.HILLERICH,R.D.SEIDEL,E.WASHINGTON, AUTHOR 2 A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,J.HAMMONDS,W.D.ZENCHECK,H.J.IMKER, AUTHOR 3 J.A.GERLT,K.ALLEN,D.DUNAWAY-MARIANO,S.C.ALMO,ENZYME FUNCTION AUTHOR 4 INITIATIVE (EFI) REVDAT 4 13-SEP-23 4DFD 1 REMARK SEQADV LINK REVDAT 3 24-JAN-18 4DFD 1 AUTHOR REVDAT 2 07-MAR-12 4DFD 1 AUTHOR JRNL REVDAT 1 01-FEB-12 4DFD 0 JRNL AUTH Y.PATSKOVSKY,R.TORO,R.BHOSLE,B.HILLERICH,R.D.SEIDEL, JRNL AUTH 2 E.WASHINGTON,A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,J.HAMMONDS, JRNL AUTH 3 W.D.ZENCHECK,H.J.IMKER,K.ALLEN,D.DUNAWAY-MARIANO,J.A.GERLT, JRNL AUTH 4 S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF PROTEIN BT-2542 FROM BACTEROIDES JRNL TITL 2 THETAIOTAOMICRON (TARGET EFI-501088) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 32505 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1075 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2197 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.2980 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.3880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3322 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 248 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.45 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.51000 REMARK 3 B22 (A**2) : 0.78000 REMARK 3 B33 (A**2) : -3.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.164 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.154 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.122 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.526 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3454 ; 0.009 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4649 ; 1.289 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 410 ; 5.534 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 165 ;38.299 ;24.909 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 666 ;15.036 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;14.823 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 498 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2569 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4DFD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000070259. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39097 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 70.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07000 REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.97000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MR REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4DCC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CHES, PH 8.5, 30% PEG3K, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 294K, PH 9.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.86550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.08300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.96850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.08300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.86550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.96850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 GLN A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 LYS A 207 REMARK 465 MET B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 SER B -14 REMARK 465 SER B -13 REMARK 465 GLY B -12 REMARK 465 VAL B -11 REMARK 465 ASP B -10 REMARK 465 LEU B -9 REMARK 465 GLY B -8 REMARK 465 THR B -7 REMARK 465 GLU B -6 REMARK 465 ASN B -5 REMARK 465 LEU B -4 REMARK 465 TYR B -3 REMARK 465 PHE B -2 REMARK 465 GLN B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 SER B 3 REMARK 465 CYS B 42 REMARK 465 THR B 43 REMARK 465 HIS B 44 REMARK 465 GLN B 45 REMARK 465 LEU B 46 REMARK 465 LYS B 207 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 3 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 13 -60.96 -94.11 REMARK 500 ASN A 36 36.85 -95.43 REMARK 500 GLN A 45 85.35 -152.93 REMARK 500 LYS A 73 137.02 174.48 REMARK 500 LYS A 73 133.16 174.48 REMARK 500 VAL A 89 -77.81 -109.71 REMARK 500 ARG A 130 -118.91 45.56 REMARK 500 LEU B 13 -66.77 -92.21 REMARK 500 SER B 76 154.27 -28.83 REMARK 500 VAL B 89 -76.08 -107.51 REMARK 500 ARG B 130 -119.50 52.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 12 OD2 REMARK 620 2 GLY A 14 O 88.0 REMARK 620 3 ASP A 176 OD1 91.8 96.9 REMARK 620 4 HOH A 401 O 175.1 92.4 93.0 REMARK 620 5 HOH A 402 O 84.9 170.5 76.9 95.2 REMARK 620 6 HOH A 403 O 88.5 96.9 166.1 86.6 89.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 12 OD2 REMARK 620 2 GLY B 14 O 89.9 REMARK 620 3 ASP B 176 OD1 89.9 98.6 REMARK 620 4 HOH B 401 O 85.1 92.5 167.8 REMARK 620 5 HOH B 402 O 87.5 171.3 89.6 79.0 REMARK 620 6 HOH B 403 O 167.3 89.7 102.7 82.3 91.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DCC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HAD FAMILY ENZYME BT-2542 FROM BACTEROIDES REMARK 900 THETAIOTAOMICRON REMARK 900 RELATED ID: EFI-501088 RELATED DB: TARGETTRACK DBREF 4DFD A 1 207 UNP Q8A4Q5 Q8A4Q5_BACTN 1 207 DBREF 4DFD B 1 207 UNP Q8A4Q5 Q8A4Q5_BACTN 1 207 SEQADV 4DFD MET A -21 UNP Q8A4Q5 EXPRESSION TAG SEQADV 4DFD HIS A -20 UNP Q8A4Q5 EXPRESSION TAG SEQADV 4DFD HIS A -19 UNP Q8A4Q5 EXPRESSION TAG SEQADV 4DFD HIS A -18 UNP Q8A4Q5 EXPRESSION TAG SEQADV 4DFD HIS A -17 UNP Q8A4Q5 EXPRESSION TAG SEQADV 4DFD HIS A -16 UNP Q8A4Q5 EXPRESSION TAG SEQADV 4DFD HIS A -15 UNP Q8A4Q5 EXPRESSION TAG SEQADV 4DFD SER A -14 UNP Q8A4Q5 EXPRESSION TAG SEQADV 4DFD SER A -13 UNP Q8A4Q5 EXPRESSION TAG SEQADV 4DFD GLY A -12 UNP Q8A4Q5 EXPRESSION TAG SEQADV 4DFD VAL A -11 UNP Q8A4Q5 EXPRESSION TAG SEQADV 4DFD ASP A -10 UNP Q8A4Q5 EXPRESSION TAG SEQADV 4DFD LEU A -9 UNP Q8A4Q5 EXPRESSION TAG SEQADV 4DFD GLY A -8 UNP Q8A4Q5 EXPRESSION TAG SEQADV 4DFD THR A -7 UNP Q8A4Q5 EXPRESSION TAG SEQADV 4DFD GLU A -6 UNP Q8A4Q5 EXPRESSION TAG SEQADV 4DFD ASN A -5 UNP Q8A4Q5 EXPRESSION TAG SEQADV 4DFD LEU A -4 UNP Q8A4Q5 EXPRESSION TAG SEQADV 4DFD TYR A -3 UNP Q8A4Q5 EXPRESSION TAG SEQADV 4DFD PHE A -2 UNP Q8A4Q5 EXPRESSION TAG SEQADV 4DFD GLN A -1 UNP Q8A4Q5 EXPRESSION TAG SEQADV 4DFD SER A 0 UNP Q8A4Q5 EXPRESSION TAG SEQADV 4DFD MET B -21 UNP Q8A4Q5 EXPRESSION TAG SEQADV 4DFD HIS B -20 UNP Q8A4Q5 EXPRESSION TAG SEQADV 4DFD HIS B -19 UNP Q8A4Q5 EXPRESSION TAG SEQADV 4DFD HIS B -18 UNP Q8A4Q5 EXPRESSION TAG SEQADV 4DFD HIS B -17 UNP Q8A4Q5 EXPRESSION TAG SEQADV 4DFD HIS B -16 UNP Q8A4Q5 EXPRESSION TAG SEQADV 4DFD HIS B -15 UNP Q8A4Q5 EXPRESSION TAG SEQADV 4DFD SER B -14 UNP Q8A4Q5 EXPRESSION TAG SEQADV 4DFD SER B -13 UNP Q8A4Q5 EXPRESSION TAG SEQADV 4DFD GLY B -12 UNP Q8A4Q5 EXPRESSION TAG SEQADV 4DFD VAL B -11 UNP Q8A4Q5 EXPRESSION TAG SEQADV 4DFD ASP B -10 UNP Q8A4Q5 EXPRESSION TAG SEQADV 4DFD LEU B -9 UNP Q8A4Q5 EXPRESSION TAG SEQADV 4DFD GLY B -8 UNP Q8A4Q5 EXPRESSION TAG SEQADV 4DFD THR B -7 UNP Q8A4Q5 EXPRESSION TAG SEQADV 4DFD GLU B -6 UNP Q8A4Q5 EXPRESSION TAG SEQADV 4DFD ASN B -5 UNP Q8A4Q5 EXPRESSION TAG SEQADV 4DFD LEU B -4 UNP Q8A4Q5 EXPRESSION TAG SEQADV 4DFD TYR B -3 UNP Q8A4Q5 EXPRESSION TAG SEQADV 4DFD PHE B -2 UNP Q8A4Q5 EXPRESSION TAG SEQADV 4DFD GLN B -1 UNP Q8A4Q5 EXPRESSION TAG SEQADV 4DFD SER B 0 UNP Q8A4Q5 EXPRESSION TAG SEQRES 1 A 229 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 229 GLY THR GLU ASN LEU TYR PHE GLN SER MET LYS SER LYS SEQRES 3 A 229 GLY ILE LYS ASN LEU LEU ILE ASP LEU GLY GLY VAL LEU SEQRES 4 A 229 ILE ASN LEU ASP ARG GLU ARG CYS ILE GLU ASN PHE LYS SEQRES 5 A 229 LYS ILE GLY PHE GLN ASN ILE GLU GLU LYS PHE CYS THR SEQRES 6 A 229 HIS GLN LEU ASP GLY ILE PHE LEU GLN GLN GLU LYS GLY SEQRES 7 A 229 LEU ILE THR PRO ALA GLU PHE ARG ASP GLY ILE ARG GLU SEQRES 8 A 229 MET MET GLY LYS MET VAL SER ASP LYS GLN ILE ASP ALA SEQRES 9 A 229 ALA TRP ASN SER PHE LEU VAL ASP ILE PRO THR TYR LYS SEQRES 10 A 229 LEU ASP LEU LEU LEU LYS LEU ARG GLU LYS TYR VAL VAL SEQRES 11 A 229 TYR LEU LEU SER ASN THR ASN ASP ILE HIS TRP LYS TRP SEQRES 12 A 229 VAL CYS LYS ASN ALA PHE PRO TYR ARG THR PHE LYS VAL SEQRES 13 A 229 GLU ASP TYR PHE GLU LYS THR TYR LEU SER TYR GLU MET SEQRES 14 A 229 LYS MET ALA LYS PRO GLU PRO GLU ILE PHE LYS ALA VAL SEQRES 15 A 229 THR GLU ASP ALA GLY ILE ASP PRO LYS GLU THR PHE PHE SEQRES 16 A 229 ILE ASP ASP SER GLU ILE ASN CYS LYS VAL ALA GLN GLU SEQRES 17 A 229 LEU GLY ILE SER THR TYR THR PRO LYS ALA GLY GLU ASP SEQRES 18 A 229 TRP SER HIS LEU PHE ARG LYS LYS SEQRES 1 B 229 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 229 GLY THR GLU ASN LEU TYR PHE GLN SER MET LYS SER LYS SEQRES 3 B 229 GLY ILE LYS ASN LEU LEU ILE ASP LEU GLY GLY VAL LEU SEQRES 4 B 229 ILE ASN LEU ASP ARG GLU ARG CYS ILE GLU ASN PHE LYS SEQRES 5 B 229 LYS ILE GLY PHE GLN ASN ILE GLU GLU LYS PHE CYS THR SEQRES 6 B 229 HIS GLN LEU ASP GLY ILE PHE LEU GLN GLN GLU LYS GLY SEQRES 7 B 229 LEU ILE THR PRO ALA GLU PHE ARG ASP GLY ILE ARG GLU SEQRES 8 B 229 MET MET GLY LYS MET VAL SER ASP LYS GLN ILE ASP ALA SEQRES 9 B 229 ALA TRP ASN SER PHE LEU VAL ASP ILE PRO THR TYR LYS SEQRES 10 B 229 LEU ASP LEU LEU LEU LYS LEU ARG GLU LYS TYR VAL VAL SEQRES 11 B 229 TYR LEU LEU SER ASN THR ASN ASP ILE HIS TRP LYS TRP SEQRES 12 B 229 VAL CYS LYS ASN ALA PHE PRO TYR ARG THR PHE LYS VAL SEQRES 13 B 229 GLU ASP TYR PHE GLU LYS THR TYR LEU SER TYR GLU MET SEQRES 14 B 229 LYS MET ALA LYS PRO GLU PRO GLU ILE PHE LYS ALA VAL SEQRES 15 B 229 THR GLU ASP ALA GLY ILE ASP PRO LYS GLU THR PHE PHE SEQRES 16 B 229 ILE ASP ASP SER GLU ILE ASN CYS LYS VAL ALA GLN GLU SEQRES 17 B 229 LEU GLY ILE SER THR TYR THR PRO LYS ALA GLY GLU ASP SEQRES 18 B 229 TRP SER HIS LEU PHE ARG LYS LYS HET MG A 301 1 HET CL A 302 1 HET UNL A 303 4 HET CL A 304 1 HET MG B 301 1 HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM UNL UNKNOWN LIGAND FORMUL 3 MG 2(MG 2+) FORMUL 4 CL 2(CL 1-) FORMUL 8 HOH *248(H2 O) HELIX 1 1 ASP A 21 ILE A 32 1 12 HELIX 2 2 ASN A 36 PHE A 41 1 6 HELIX 3 3 GLY A 48 LYS A 55 1 8 HELIX 4 4 THR A 59 GLY A 72 1 14 HELIX 5 5 SER A 76 SER A 86 1 11 HELIX 6 6 PRO A 92 ARG A 103 1 12 HELIX 7 7 ASN A 115 ALA A 126 1 12 HELIX 8 8 LYS A 133 PHE A 138 1 6 HELIX 9 9 SER A 144 LYS A 148 1 5 HELIX 10 10 GLU A 153 GLY A 165 1 13 HELIX 11 11 ASP A 167 LYS A 169 5 3 HELIX 12 12 SER A 177 LEU A 187 1 11 HELIX 13 13 ASP A 199 ARG A 205 5 7 HELIX 14 14 ASP B 21 ILE B 32 1 12 HELIX 15 15 ASN B 36 PHE B 41 1 6 HELIX 16 16 GLY B 48 LYS B 55 1 8 HELIX 17 17 THR B 59 GLY B 72 1 14 HELIX 18 18 SER B 76 SER B 86 1 11 HELIX 19 19 PRO B 92 ARG B 103 1 12 HELIX 20 20 ASN B 115 ALA B 126 1 12 HELIX 21 21 LYS B 133 PHE B 138 1 6 HELIX 22 22 SER B 144 LYS B 148 1 5 HELIX 23 23 GLU B 153 GLY B 165 1 13 HELIX 24 24 ASP B 167 LYS B 169 5 3 HELIX 25 25 SER B 177 LEU B 187 1 11 HELIX 26 26 ASP B 199 ARG B 205 5 7 SHEET 1 A 5 LYS A 140 LEU A 143 0 SHEET 2 A 5 VAL A 107 SER A 112 1 N LEU A 110 O TYR A 142 SHEET 3 A 5 ASN A 8 ILE A 11 1 N LEU A 9 O TYR A 109 SHEET 4 A 5 THR A 171 ILE A 174 1 O PHE A 172 N ASN A 8 SHEET 5 A 5 SER A 190 TYR A 192 1 O SER A 190 N PHE A 173 SHEET 1 B 5 LYS B 140 LEU B 143 0 SHEET 2 B 5 VAL B 107 SER B 112 1 N LEU B 110 O TYR B 142 SHEET 3 B 5 ASN B 8 ILE B 11 1 N LEU B 9 O VAL B 107 SHEET 4 B 5 THR B 171 ILE B 174 1 O PHE B 172 N LEU B 10 SHEET 5 B 5 SER B 190 TYR B 192 1 O SER B 190 N PHE B 173 LINK OD2 ASP A 12 MG MG A 301 1555 1555 2.06 LINK O GLY A 14 MG MG A 301 1555 1555 2.18 LINK OD1 ASP A 176 MG MG A 301 1555 1555 2.01 LINK MG MG A 301 O HOH A 401 1555 1555 2.14 LINK MG MG A 301 O HOH A 402 1555 1555 2.01 LINK MG MG A 301 O HOH A 403 1555 1555 1.98 LINK OD2 ASP B 12 MG MG B 301 1555 1555 2.10 LINK O GLY B 14 MG MG B 301 1555 1555 2.08 LINK OD1 ASP B 176 MG MG B 301 1555 1555 2.00 LINK MG MG B 301 O HOH B 401 1555 1555 1.82 LINK MG MG B 301 O HOH B 402 1555 1555 2.18 LINK MG MG B 301 O HOH B 403 1555 1555 2.04 CISPEP 1 LYS A 151 PRO A 152 0 5.95 CISPEP 2 LYS B 151 PRO B 152 0 2.33 SITE 1 AC1 6 ASP A 12 GLY A 14 ASP A 176 HOH A 401 SITE 2 AC1 6 HOH A 402 HOH A 403 SITE 1 AC2 6 ASP A 12 ASN A 113 LYS A 151 HOH A 403 SITE 2 AC2 6 HOH A 404 HOH A 450 SITE 1 AC3 3 PRO A 92 THR A 93 HOH A 465 SITE 1 AC4 6 ASP B 12 GLY B 14 ASP B 176 HOH B 401 SITE 2 AC4 6 HOH B 402 HOH B 403 CRYST1 53.731 77.937 116.166 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018611 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012831 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008608 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 0.995160 0.026855 -0.094528 1.92624 1 MTRIX2 2 0.026877 -0.999638 -0.001036 44.59955 1 MTRIX3 2 -0.094521 -0.001510 -0.995522 57.51006 1