data_4DFN # _entry.id 4DFN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.292 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4DFN RCSB RCSB070269 WWPDB D_1000070269 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4DFL _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 4DFN _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-01-24 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lopez, M.' 1 'Segarra, V.' 2 'Vidal, B.' 3 'Wenzkowski, C.' 4 'Jestel, A.' 5 'Krapp, S.' 6 'Blaesse, M.' 7 'Nagel, S.' 8 'Schreiner, P.' 9 # _citation.id primary _citation.title 'Pyrazine-based Syk kinase inhibitors.' _citation.journal_abbrev Bioorg.Med.Chem.Lett. _citation.journal_volume 22 _citation.page_first 2784 _citation.page_last 2788 _citation.year 2012 _citation.journal_id_ASTM BMCLE8 _citation.country UK _citation.journal_id_ISSN 0960-894X _citation.journal_id_CSD 1127 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22425453 _citation.pdbx_database_id_DOI 10.1016/j.bmcl.2012.02.087 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Forns, P.' 1 primary 'Esteve, C.' 2 primary 'Taboada, L.' 3 primary 'Alonso, J.A.' 4 primary 'Orellana, A.' 5 primary 'Maldonado, M.' 6 primary 'Carreno, C.' 7 primary 'Ramis, I.' 8 primary 'Lopez, M.' 9 primary 'Miralpeix, M.' 10 primary 'Vidal, B.' 11 # _cell.length_a 40.295 _cell.length_b 84.848 _cell.length_c 90.996 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4DFN _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 4DFN _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 19 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Tyrosine-protein kinase SYK' 31798.670 1 2.7.10.2 ? ? ? 2 non-polymer syn '3-amino-6-[3-(1-methyl-1H-pyrazol-4-yl)phenyl]-N-[(1R,2r,3S,5s,7s)-5-hydroxyadamantan-2-yl]pyrazine-2-carboxamide' 444.529 1 ? ? ? ? 3 water nat water 18.015 22 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Spleen tyrosine kinase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;VYLDRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAE SWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRAD ENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAGCPREMY DLMNLCWTYDVENRPGFAAVELRLRNYYYDVVNE ; _entity_poly.pdbx_seq_one_letter_code_can ;VYLDRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAE SWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRAD ENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAGCPREMY DLMNLCWTYDVENRPGFAAVELRLRNYYYDVVNE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 TYR n 1 3 LEU n 1 4 ASP n 1 5 ARG n 1 6 LYS n 1 7 LEU n 1 8 LEU n 1 9 THR n 1 10 LEU n 1 11 GLU n 1 12 ASP n 1 13 LYS n 1 14 GLU n 1 15 LEU n 1 16 GLY n 1 17 SER n 1 18 GLY n 1 19 ASN n 1 20 PHE n 1 21 GLY n 1 22 THR n 1 23 VAL n 1 24 LYS n 1 25 LYS n 1 26 GLY n 1 27 TYR n 1 28 TYR n 1 29 GLN n 1 30 MET n 1 31 LYS n 1 32 LYS n 1 33 VAL n 1 34 VAL n 1 35 LYS n 1 36 THR n 1 37 VAL n 1 38 ALA n 1 39 VAL n 1 40 LYS n 1 41 ILE n 1 42 LEU n 1 43 LYS n 1 44 ASN n 1 45 GLU n 1 46 ALA n 1 47 ASN n 1 48 ASP n 1 49 PRO n 1 50 ALA n 1 51 LEU n 1 52 LYS n 1 53 ASP n 1 54 GLU n 1 55 LEU n 1 56 LEU n 1 57 ALA n 1 58 GLU n 1 59 ALA n 1 60 ASN n 1 61 VAL n 1 62 MET n 1 63 GLN n 1 64 GLN n 1 65 LEU n 1 66 ASP n 1 67 ASN n 1 68 PRO n 1 69 TYR n 1 70 ILE n 1 71 VAL n 1 72 ARG n 1 73 MET n 1 74 ILE n 1 75 GLY n 1 76 ILE n 1 77 CYS n 1 78 GLU n 1 79 ALA n 1 80 GLU n 1 81 SER n 1 82 TRP n 1 83 MET n 1 84 LEU n 1 85 VAL n 1 86 MET n 1 87 GLU n 1 88 MET n 1 89 ALA n 1 90 GLU n 1 91 LEU n 1 92 GLY n 1 93 PRO n 1 94 LEU n 1 95 ASN n 1 96 LYS n 1 97 TYR n 1 98 LEU n 1 99 GLN n 1 100 GLN n 1 101 ASN n 1 102 ARG n 1 103 HIS n 1 104 VAL n 1 105 LYS n 1 106 ASP n 1 107 LYS n 1 108 ASN n 1 109 ILE n 1 110 ILE n 1 111 GLU n 1 112 LEU n 1 113 VAL n 1 114 HIS n 1 115 GLN n 1 116 VAL n 1 117 SER n 1 118 MET n 1 119 GLY n 1 120 MET n 1 121 LYS n 1 122 TYR n 1 123 LEU n 1 124 GLU n 1 125 GLU n 1 126 SER n 1 127 ASN n 1 128 PHE n 1 129 VAL n 1 130 HIS n 1 131 ARG n 1 132 ASP n 1 133 LEU n 1 134 ALA n 1 135 ALA n 1 136 ARG n 1 137 ASN n 1 138 VAL n 1 139 LEU n 1 140 LEU n 1 141 VAL n 1 142 THR n 1 143 GLN n 1 144 HIS n 1 145 TYR n 1 146 ALA n 1 147 LYS n 1 148 ILE n 1 149 SER n 1 150 ASP n 1 151 PHE n 1 152 GLY n 1 153 LEU n 1 154 SER n 1 155 LYS n 1 156 ALA n 1 157 LEU n 1 158 ARG n 1 159 ALA n 1 160 ASP n 1 161 GLU n 1 162 ASN n 1 163 TYR n 1 164 TYR n 1 165 LYS n 1 166 ALA n 1 167 GLN n 1 168 THR n 1 169 HIS n 1 170 GLY n 1 171 LYS n 1 172 TRP n 1 173 PRO n 1 174 VAL n 1 175 LYS n 1 176 TRP n 1 177 TYR n 1 178 ALA n 1 179 PRO n 1 180 GLU n 1 181 CYS n 1 182 ILE n 1 183 ASN n 1 184 TYR n 1 185 TYR n 1 186 LYS n 1 187 PHE n 1 188 SER n 1 189 SER n 1 190 LYS n 1 191 SER n 1 192 ASP n 1 193 VAL n 1 194 TRP n 1 195 SER n 1 196 PHE n 1 197 GLY n 1 198 VAL n 1 199 LEU n 1 200 MET n 1 201 TRP n 1 202 GLU n 1 203 ALA n 1 204 PHE n 1 205 SER n 1 206 TYR n 1 207 GLY n 1 208 GLN n 1 209 LYS n 1 210 PRO n 1 211 TYR n 1 212 ARG n 1 213 GLY n 1 214 MET n 1 215 LYS n 1 216 GLY n 1 217 SER n 1 218 GLU n 1 219 VAL n 1 220 THR n 1 221 ALA n 1 222 MET n 1 223 LEU n 1 224 GLU n 1 225 LYS n 1 226 GLY n 1 227 GLU n 1 228 ARG n 1 229 MET n 1 230 GLY n 1 231 CYS n 1 232 PRO n 1 233 ALA n 1 234 GLY n 1 235 CYS n 1 236 PRO n 1 237 ARG n 1 238 GLU n 1 239 MET n 1 240 TYR n 1 241 ASP n 1 242 LEU n 1 243 MET n 1 244 ASN n 1 245 LEU n 1 246 CYS n 1 247 TRP n 1 248 THR n 1 249 TYR n 1 250 ASP n 1 251 VAL n 1 252 GLU n 1 253 ASN n 1 254 ARG n 1 255 PRO n 1 256 GLY n 1 257 PHE n 1 258 ALA n 1 259 ALA n 1 260 VAL n 1 261 GLU n 1 262 LEU n 1 263 ARG n 1 264 LEU n 1 265 ARG n 1 266 ASN n 1 267 TYR n 1 268 TYR n 1 269 TYR n 1 270 ASP n 1 271 VAL n 1 272 VAL n 1 273 ASN n 1 274 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene SYK _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code KSYK_HUMAN _struct_ref.pdbx_db_accession P43405 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;VYLDRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAE SWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRAD ENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAGCPREMY DLMNLCWTYDVENRPGFAAVELRLRNYYYDVVN ; _struct_ref.pdbx_align_begin 363 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4DFN _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 273 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P43405 _struct_ref_seq.db_align_beg 363 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 635 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 363 _struct_ref_seq.pdbx_auth_seq_align_end 635 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4DFN _struct_ref_seq_dif.mon_id GLU _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 274 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P43405 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'EXPRESSION TAG' _struct_ref_seq_dif.pdbx_auth_seq_num 636 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 0K1 non-polymer . '3-amino-6-[3-(1-methyl-1H-pyrazol-4-yl)phenyl]-N-[(1R,2r,3S,5s,7s)-5-hydroxyadamantan-2-yl]pyrazine-2-carboxamide' ? 'C25 H28 N6 O2' 444.529 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4DFN _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.520 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 51.280 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'PILATUS 6M' _diffrn_detector.type DECTRIS _diffrn_detector.pdbx_collection_date 2009-04-09 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.0000 1.0 2 1 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X06SA' _diffrn_source.pdbx_wavelength_list 1 _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X06SA _diffrn_source.pdbx_wavelength 1.0000 # _reflns.entry_id 4DFN _reflns.d_resolution_high 2.480 _reflns.d_resolution_low 62.060 _reflns.number_obs 11590 _reflns.pdbx_Rmerge_I_obs 0.069 _reflns.pdbx_redundancy 5.600 _reflns.percent_possible_obs 99.400 _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.480 _reflns_shell.d_res_low 2.640 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs 0.819 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_redundancy 5.500 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.percent_possible_all 97.200 _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4DFN _refine.ls_d_res_high 2.4800 _refine.ls_d_res_low 62.0600 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.5000 _refine.ls_number_reflns_obs 11532 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS; U VALUES: RESIDUAL ONLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2220 _refine.ls_R_factor_R_work 0.2171 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2734 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 8.8000 _refine.ls_number_reflns_R_free 1018 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 73.515 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.5800 _refine.aniso_B[2][2] -2.9100 _refine.aniso_B[3][3] 2.3200 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9330 _refine.correlation_coeff_Fo_to_Fc_free 0.8890 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.6840 _refine.pdbx_overall_ESU_R_Free 0.3250 _refine.overall_SU_ML 0.2300 _refine.overall_SU_B 21.5620 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct OTHER _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 83.810 _refine.B_iso_min 28.720 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2190 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 33 _refine_hist.number_atoms_solvent 22 _refine_hist.number_atoms_total 2245 _refine_hist.d_res_high 2.4800 _refine_hist.d_res_low 62.0600 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 2288 0.006 0.022 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 1579 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 3091 0.862 1.978 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 3843 0.744 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 269 5.020 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 106 34.322 24.245 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 416 12.723 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 12 15.642 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 323 0.054 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 2499 0.003 0.020 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 468 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 1341 1.134 2.000 ? ? 'X-RAY DIFFRACTION' r_mcbond_other 547 0.244 2.000 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 2152 2.051 3.000 ? ? 'X-RAY DIFFRACTION' r_scbond_it 947 3.062 4.000 ? ? 'X-RAY DIFFRACTION' r_scangle_it 939 4.529 6.000 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.4810 _refine_ls_shell.d_res_low 2.5450 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 95.3800 _refine_ls_shell.number_reflns_R_work 740 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2840 _refine_ls_shell.R_factor_R_free 0.3760 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 65 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 805 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4DFN _struct.title 'Crystal structure of spleen tyrosine kinase complexed with an adamantylpyrazine inhibitor' _struct.pdbx_descriptor 'Tyrosine-protein kinase SYK (E.C.2.7.10.2)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4DFN _struct_keywords.text 'PROTEIN KINASE, TRANSFERASE-TRANSFERASE INHIBITOR complex' _struct_keywords.pdbx_keywords 'TRANSFERASE/TRANSFERASE INHIBITOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 4 ? LYS A 6 ? ASP A 366 LYS A 368 5 ? 3 HELX_P HELX_P2 2 ALA A 50 ? LEU A 65 ? ALA A 412 LEU A 427 1 ? 16 HELX_P HELX_P3 3 LEU A 94 ? ASN A 101 ? LEU A 456 ASN A 463 1 ? 8 HELX_P HELX_P4 4 LYS A 105 ? SER A 126 ? LYS A 467 SER A 488 1 ? 22 HELX_P HELX_P5 5 ALA A 134 ? ARG A 136 ? ALA A 496 ARG A 498 5 ? 3 HELX_P HELX_P6 6 PRO A 173 ? TYR A 177 ? PRO A 535 TYR A 539 5 ? 5 HELX_P HELX_P7 7 ALA A 178 ? TYR A 184 ? ALA A 540 TYR A 546 1 ? 7 HELX_P HELX_P8 8 SER A 188 ? SER A 205 ? SER A 550 SER A 567 1 ? 18 HELX_P HELX_P9 9 LYS A 215 ? LYS A 225 ? LYS A 577 LYS A 587 1 ? 11 HELX_P HELX_P10 10 PRO A 236 ? TRP A 247 ? PRO A 598 TRP A 609 1 ? 12 HELX_P HELX_P11 11 GLY A 256 ? VAL A 272 ? GLY A 618 VAL A 634 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 3 ? C ? 2 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 8 ? SER A 17 ? LEU A 370 SER A 379 A 2 GLY A 21 ? GLN A 29 ? GLY A 383 GLN A 391 A 3 VAL A 34 ? LEU A 42 ? VAL A 396 LEU A 404 A 4 TRP A 82 ? GLU A 87 ? TRP A 444 GLU A 449 A 5 MET A 73 ? GLU A 78 ? MET A 435 GLU A 440 B 1 GLY A 92 ? PRO A 93 ? GLY A 454 PRO A 455 B 2 VAL A 138 ? THR A 142 ? VAL A 500 THR A 504 B 3 TYR A 145 ? ILE A 148 ? TYR A 507 ILE A 510 C 1 PHE A 128 ? VAL A 129 ? PHE A 490 VAL A 491 C 2 LYS A 155 ? ALA A 156 ? LYS A 517 ALA A 518 D 1 TYR A 164 ? LYS A 165 ? TYR A 526 LYS A 527 D 2 LYS A 186 ? PHE A 187 ? LYS A 548 PHE A 549 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 9 ? N THR A 371 O TYR A 27 ? O TYR A 389 A 2 3 N GLY A 26 ? N GLY A 388 O VAL A 37 ? O VAL A 399 A 3 4 N LYS A 40 ? N LYS A 402 O LEU A 84 ? O LEU A 446 A 4 5 O VAL A 85 ? O VAL A 447 N GLY A 75 ? N GLY A 437 B 1 2 N GLY A 92 ? N GLY A 454 O LEU A 140 ? O LEU A 502 B 2 3 N LEU A 139 ? N LEU A 501 O LYS A 147 ? O LYS A 509 C 1 2 N VAL A 129 ? N VAL A 491 O LYS A 155 ? O LYS A 517 D 1 2 N TYR A 164 ? N TYR A 526 O PHE A 187 ? O PHE A 549 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 11 _struct_site.details 'BINDING SITE FOR RESIDUE 0K1 A 701' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 11 VAL A 23 ? VAL A 385 . ? 1_555 ? 2 AC1 11 ALA A 38 ? ALA A 400 . ? 1_555 ? 3 AC1 11 MET A 86 ? MET A 448 . ? 1_555 ? 4 AC1 11 GLU A 87 ? GLU A 449 . ? 1_555 ? 5 AC1 11 MET A 88 ? MET A 450 . ? 1_555 ? 6 AC1 11 ALA A 89 ? ALA A 451 . ? 1_555 ? 7 AC1 11 LYS A 96 ? LYS A 458 . ? 1_555 ? 8 AC1 11 LEU A 139 ? LEU A 501 . ? 1_555 ? 9 AC1 11 SER A 149 ? SER A 511 . ? 1_555 ? 10 AC1 11 ASP A 150 ? ASP A 512 . ? 1_555 ? 11 AC1 11 HOH C . ? HOH A 817 . ? 1_555 ? # _atom_sites.entry_id 4DFN _atom_sites.fract_transf_matrix[1][1] 0.024817 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011786 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010989 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 363 363 VAL VAL A . n A 1 2 TYR 2 364 364 TYR TYR A . n A 1 3 LEU 3 365 365 LEU LEU A . n A 1 4 ASP 4 366 366 ASP ASP A . n A 1 5 ARG 5 367 367 ARG ARG A . n A 1 6 LYS 6 368 368 LYS LYS A . n A 1 7 LEU 7 369 369 LEU LEU A . n A 1 8 LEU 8 370 370 LEU LEU A . n A 1 9 THR 9 371 371 THR THR A . n A 1 10 LEU 10 372 372 LEU LEU A . n A 1 11 GLU 11 373 373 GLU GLU A . n A 1 12 ASP 12 374 374 ASP ASP A . n A 1 13 LYS 13 375 375 LYS LYS A . n A 1 14 GLU 14 376 376 GLU GLU A . n A 1 15 LEU 15 377 377 LEU LEU A . n A 1 16 GLY 16 378 378 GLY GLY A . n A 1 17 SER 17 379 379 SER SER A . n A 1 18 GLY 18 380 380 GLY GLY A . n A 1 19 ASN 19 381 381 ASN ASN A . n A 1 20 PHE 20 382 382 PHE PHE A . n A 1 21 GLY 21 383 383 GLY GLY A . n A 1 22 THR 22 384 384 THR THR A . n A 1 23 VAL 23 385 385 VAL VAL A . n A 1 24 LYS 24 386 386 LYS LYS A . n A 1 25 LYS 25 387 387 LYS LYS A . n A 1 26 GLY 26 388 388 GLY GLY A . n A 1 27 TYR 27 389 389 TYR TYR A . n A 1 28 TYR 28 390 390 TYR TYR A . n A 1 29 GLN 29 391 391 GLN GLN A . n A 1 30 MET 30 392 392 MET MET A . n A 1 31 LYS 31 393 393 LYS LYS A . n A 1 32 LYS 32 394 394 LYS LYS A . n A 1 33 VAL 33 395 395 VAL VAL A . n A 1 34 VAL 34 396 396 VAL VAL A . n A 1 35 LYS 35 397 397 LYS LYS A . n A 1 36 THR 36 398 398 THR THR A . n A 1 37 VAL 37 399 399 VAL VAL A . n A 1 38 ALA 38 400 400 ALA ALA A . n A 1 39 VAL 39 401 401 VAL VAL A . n A 1 40 LYS 40 402 402 LYS LYS A . n A 1 41 ILE 41 403 403 ILE ILE A . n A 1 42 LEU 42 404 404 LEU LEU A . n A 1 43 LYS 43 405 405 LYS LYS A . n A 1 44 ASN 44 406 ? ? ? A . n A 1 45 GLU 45 407 ? ? ? A . n A 1 46 ALA 46 408 ? ? ? A . n A 1 47 ASN 47 409 ? ? ? A . n A 1 48 ASP 48 410 ? ? ? A . n A 1 49 PRO 49 411 411 PRO PRO A . n A 1 50 ALA 50 412 412 ALA ALA A . n A 1 51 LEU 51 413 413 LEU LEU A . n A 1 52 LYS 52 414 414 LYS LYS A . n A 1 53 ASP 53 415 415 ASP ASP A . n A 1 54 GLU 54 416 416 GLU GLU A . n A 1 55 LEU 55 417 417 LEU LEU A . n A 1 56 LEU 56 418 418 LEU LEU A . n A 1 57 ALA 57 419 419 ALA ALA A . n A 1 58 GLU 58 420 420 GLU GLU A . n A 1 59 ALA 59 421 421 ALA ALA A . n A 1 60 ASN 60 422 422 ASN ASN A . n A 1 61 VAL 61 423 423 VAL VAL A . n A 1 62 MET 62 424 424 MET MET A . n A 1 63 GLN 63 425 425 GLN GLN A . n A 1 64 GLN 64 426 426 GLN GLN A . n A 1 65 LEU 65 427 427 LEU LEU A . n A 1 66 ASP 66 428 428 ASP ASP A . n A 1 67 ASN 67 429 429 ASN ASN A . n A 1 68 PRO 68 430 430 PRO PRO A . n A 1 69 TYR 69 431 431 TYR TYR A . n A 1 70 ILE 70 432 432 ILE ILE A . n A 1 71 VAL 71 433 433 VAL VAL A . n A 1 72 ARG 72 434 434 ARG ARG A . n A 1 73 MET 73 435 435 MET MET A . n A 1 74 ILE 74 436 436 ILE ILE A . n A 1 75 GLY 75 437 437 GLY GLY A . n A 1 76 ILE 76 438 438 ILE ILE A . n A 1 77 CYS 77 439 439 CYS CYS A . n A 1 78 GLU 78 440 440 GLU GLU A . n A 1 79 ALA 79 441 441 ALA ALA A . n A 1 80 GLU 80 442 442 GLU GLU A . n A 1 81 SER 81 443 443 SER SER A . n A 1 82 TRP 82 444 444 TRP TRP A . n A 1 83 MET 83 445 445 MET MET A . n A 1 84 LEU 84 446 446 LEU LEU A . n A 1 85 VAL 85 447 447 VAL VAL A . n A 1 86 MET 86 448 448 MET MET A . n A 1 87 GLU 87 449 449 GLU GLU A . n A 1 88 MET 88 450 450 MET MET A . n A 1 89 ALA 89 451 451 ALA ALA A . n A 1 90 GLU 90 452 452 GLU GLU A . n A 1 91 LEU 91 453 453 LEU LEU A . n A 1 92 GLY 92 454 454 GLY GLY A . n A 1 93 PRO 93 455 455 PRO PRO A . n A 1 94 LEU 94 456 456 LEU LEU A . n A 1 95 ASN 95 457 457 ASN ASN A . n A 1 96 LYS 96 458 458 LYS LYS A . n A 1 97 TYR 97 459 459 TYR TYR A . n A 1 98 LEU 98 460 460 LEU LEU A . n A 1 99 GLN 99 461 461 GLN GLN A . n A 1 100 GLN 100 462 462 GLN GLN A . n A 1 101 ASN 101 463 463 ASN ASN A . n A 1 102 ARG 102 464 464 ARG ARG A . n A 1 103 HIS 103 465 465 HIS HIS A . n A 1 104 VAL 104 466 466 VAL VAL A . n A 1 105 LYS 105 467 467 LYS LYS A . n A 1 106 ASP 106 468 468 ASP ASP A . n A 1 107 LYS 107 469 469 LYS LYS A . n A 1 108 ASN 108 470 470 ASN ASN A . n A 1 109 ILE 109 471 471 ILE ILE A . n A 1 110 ILE 110 472 472 ILE ILE A . n A 1 111 GLU 111 473 473 GLU GLU A . n A 1 112 LEU 112 474 474 LEU LEU A . n A 1 113 VAL 113 475 475 VAL VAL A . n A 1 114 HIS 114 476 476 HIS HIS A . n A 1 115 GLN 115 477 477 GLN GLN A . n A 1 116 VAL 116 478 478 VAL VAL A . n A 1 117 SER 117 479 479 SER SER A . n A 1 118 MET 118 480 480 MET MET A . n A 1 119 GLY 119 481 481 GLY GLY A . n A 1 120 MET 120 482 482 MET MET A . n A 1 121 LYS 121 483 483 LYS LYS A . n A 1 122 TYR 122 484 484 TYR TYR A . n A 1 123 LEU 123 485 485 LEU LEU A . n A 1 124 GLU 124 486 486 GLU GLU A . n A 1 125 GLU 125 487 487 GLU GLU A . n A 1 126 SER 126 488 488 SER SER A . n A 1 127 ASN 127 489 489 ASN ASN A . n A 1 128 PHE 128 490 490 PHE PHE A . n A 1 129 VAL 129 491 491 VAL VAL A . n A 1 130 HIS 130 492 492 HIS HIS A . n A 1 131 ARG 131 493 493 ARG ARG A . n A 1 132 ASP 132 494 494 ASP ASP A . n A 1 133 LEU 133 495 495 LEU LEU A . n A 1 134 ALA 134 496 496 ALA ALA A . n A 1 135 ALA 135 497 497 ALA ALA A . n A 1 136 ARG 136 498 498 ARG ARG A . n A 1 137 ASN 137 499 499 ASN ASN A . n A 1 138 VAL 138 500 500 VAL VAL A . n A 1 139 LEU 139 501 501 LEU LEU A . n A 1 140 LEU 140 502 502 LEU LEU A . n A 1 141 VAL 141 503 503 VAL VAL A . n A 1 142 THR 142 504 504 THR THR A . n A 1 143 GLN 143 505 505 GLN GLN A . n A 1 144 HIS 144 506 506 HIS HIS A . n A 1 145 TYR 145 507 507 TYR TYR A . n A 1 146 ALA 146 508 508 ALA ALA A . n A 1 147 LYS 147 509 509 LYS LYS A . n A 1 148 ILE 148 510 510 ILE ILE A . n A 1 149 SER 149 511 511 SER SER A . n A 1 150 ASP 150 512 512 ASP ASP A . n A 1 151 PHE 151 513 513 PHE PHE A . n A 1 152 GLY 152 514 514 GLY GLY A . n A 1 153 LEU 153 515 515 LEU LEU A . n A 1 154 SER 154 516 516 SER SER A . n A 1 155 LYS 155 517 517 LYS LYS A . n A 1 156 ALA 156 518 518 ALA ALA A . n A 1 157 LEU 157 519 519 LEU LEU A . n A 1 158 ARG 158 520 520 ARG ARG A . n A 1 159 ALA 159 521 521 ALA ALA A . n A 1 160 ASP 160 522 522 ASP ASP A . n A 1 161 GLU 161 523 523 GLU GLU A . n A 1 162 ASN 162 524 524 ASN ASN A . n A 1 163 TYR 163 525 525 TYR TYR A . n A 1 164 TYR 164 526 526 TYR TYR A . n A 1 165 LYS 165 527 527 LYS LYS A . n A 1 166 ALA 166 528 528 ALA ALA A . n A 1 167 GLN 167 529 529 GLN GLN A . n A 1 168 THR 168 530 530 THR THR A . n A 1 169 HIS 169 531 531 HIS HIS A . n A 1 170 GLY 170 532 532 GLY GLY A . n A 1 171 LYS 171 533 533 LYS LYS A . n A 1 172 TRP 172 534 534 TRP TRP A . n A 1 173 PRO 173 535 535 PRO PRO A . n A 1 174 VAL 174 536 536 VAL VAL A . n A 1 175 LYS 175 537 537 LYS LYS A . n A 1 176 TRP 176 538 538 TRP TRP A . n A 1 177 TYR 177 539 539 TYR TYR A . n A 1 178 ALA 178 540 540 ALA ALA A . n A 1 179 PRO 179 541 541 PRO PRO A . n A 1 180 GLU 180 542 542 GLU GLU A . n A 1 181 CYS 181 543 543 CYS CYS A . n A 1 182 ILE 182 544 544 ILE ILE A . n A 1 183 ASN 183 545 545 ASN ASN A . n A 1 184 TYR 184 546 546 TYR TYR A . n A 1 185 TYR 185 547 547 TYR TYR A . n A 1 186 LYS 186 548 548 LYS LYS A . n A 1 187 PHE 187 549 549 PHE PHE A . n A 1 188 SER 188 550 550 SER SER A . n A 1 189 SER 189 551 551 SER SER A . n A 1 190 LYS 190 552 552 LYS LYS A . n A 1 191 SER 191 553 553 SER SER A . n A 1 192 ASP 192 554 554 ASP ASP A . n A 1 193 VAL 193 555 555 VAL VAL A . n A 1 194 TRP 194 556 556 TRP TRP A . n A 1 195 SER 195 557 557 SER SER A . n A 1 196 PHE 196 558 558 PHE PHE A . n A 1 197 GLY 197 559 559 GLY GLY A . n A 1 198 VAL 198 560 560 VAL VAL A . n A 1 199 LEU 199 561 561 LEU LEU A . n A 1 200 MET 200 562 562 MET MET A . n A 1 201 TRP 201 563 563 TRP TRP A . n A 1 202 GLU 202 564 564 GLU GLU A . n A 1 203 ALA 203 565 565 ALA ALA A . n A 1 204 PHE 204 566 566 PHE PHE A . n A 1 205 SER 205 567 567 SER SER A . n A 1 206 TYR 206 568 568 TYR TYR A . n A 1 207 GLY 207 569 569 GLY GLY A . n A 1 208 GLN 208 570 570 GLN GLN A . n A 1 209 LYS 209 571 571 LYS LYS A . n A 1 210 PRO 210 572 572 PRO PRO A . n A 1 211 TYR 211 573 573 TYR TYR A . n A 1 212 ARG 212 574 574 ARG ARG A . n A 1 213 GLY 213 575 575 GLY GLY A . n A 1 214 MET 214 576 576 MET MET A . n A 1 215 LYS 215 577 577 LYS LYS A . n A 1 216 GLY 216 578 578 GLY GLY A . n A 1 217 SER 217 579 579 SER SER A . n A 1 218 GLU 218 580 580 GLU GLU A . n A 1 219 VAL 219 581 581 VAL VAL A . n A 1 220 THR 220 582 582 THR THR A . n A 1 221 ALA 221 583 583 ALA ALA A . n A 1 222 MET 222 584 584 MET MET A . n A 1 223 LEU 223 585 585 LEU LEU A . n A 1 224 GLU 224 586 586 GLU GLU A . n A 1 225 LYS 225 587 587 LYS LYS A . n A 1 226 GLY 226 588 588 GLY GLY A . n A 1 227 GLU 227 589 589 GLU GLU A . n A 1 228 ARG 228 590 590 ARG ARG A . n A 1 229 MET 229 591 591 MET MET A . n A 1 230 GLY 230 592 592 GLY GLY A . n A 1 231 CYS 231 593 593 CYS CYS A . n A 1 232 PRO 232 594 594 PRO PRO A . n A 1 233 ALA 233 595 595 ALA ALA A . n A 1 234 GLY 234 596 596 GLY GLY A . n A 1 235 CYS 235 597 597 CYS CYS A . n A 1 236 PRO 236 598 598 PRO PRO A . n A 1 237 ARG 237 599 599 ARG ARG A . n A 1 238 GLU 238 600 600 GLU GLU A . n A 1 239 MET 239 601 601 MET MET A . n A 1 240 TYR 240 602 602 TYR TYR A . n A 1 241 ASP 241 603 603 ASP ASP A . n A 1 242 LEU 242 604 604 LEU LEU A . n A 1 243 MET 243 605 605 MET MET A . n A 1 244 ASN 244 606 606 ASN ASN A . n A 1 245 LEU 245 607 607 LEU LEU A . n A 1 246 CYS 246 608 608 CYS CYS A . n A 1 247 TRP 247 609 609 TRP TRP A . n A 1 248 THR 248 610 610 THR THR A . n A 1 249 TYR 249 611 611 TYR TYR A . n A 1 250 ASP 250 612 612 ASP ASP A . n A 1 251 VAL 251 613 613 VAL VAL A . n A 1 252 GLU 252 614 614 GLU GLU A . n A 1 253 ASN 253 615 615 ASN ASN A . n A 1 254 ARG 254 616 616 ARG ARG A . n A 1 255 PRO 255 617 617 PRO PRO A . n A 1 256 GLY 256 618 618 GLY GLY A . n A 1 257 PHE 257 619 619 PHE PHE A . n A 1 258 ALA 258 620 620 ALA ALA A . n A 1 259 ALA 259 621 621 ALA ALA A . n A 1 260 VAL 260 622 622 VAL VAL A . n A 1 261 GLU 261 623 623 GLU GLU A . n A 1 262 LEU 262 624 624 LEU LEU A . n A 1 263 ARG 263 625 625 ARG ARG A . n A 1 264 LEU 264 626 626 LEU LEU A . n A 1 265 ARG 265 627 627 ARG ARG A . n A 1 266 ASN 266 628 628 ASN ASN A . n A 1 267 TYR 267 629 629 TYR TYR A . n A 1 268 TYR 268 630 630 TYR TYR A . n A 1 269 TYR 269 631 631 TYR TYR A . n A 1 270 ASP 270 632 632 ASP ASP A . n A 1 271 VAL 271 633 633 VAL VAL A . n A 1 272 VAL 272 634 634 VAL VAL A . n A 1 273 ASN 273 635 635 ASN ASN A . n A 1 274 GLU 274 636 636 GLU GLU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 0K1 1 701 1 0K1 INX A . C 3 HOH 1 801 1 HOH HOH A . C 3 HOH 2 802 2 HOH HOH A . C 3 HOH 3 803 3 HOH HOH A . C 3 HOH 4 804 4 HOH HOH A . C 3 HOH 5 805 5 HOH HOH A . C 3 HOH 6 806 6 HOH HOH A . C 3 HOH 7 807 7 HOH HOH A . C 3 HOH 8 808 8 HOH HOH A . C 3 HOH 9 809 9 HOH HOH A . C 3 HOH 10 810 10 HOH HOH A . C 3 HOH 11 811 11 HOH HOH A . C 3 HOH 12 812 12 HOH HOH A . C 3 HOH 13 813 13 HOH HOH A . C 3 HOH 14 814 14 HOH HOH A . C 3 HOH 15 815 15 HOH HOH A . C 3 HOH 16 816 16 HOH HOH A . C 3 HOH 17 817 17 HOH HOH A . C 3 HOH 18 818 18 HOH HOH A . C 3 HOH 19 819 19 HOH HOH A . C 3 HOH 20 820 20 HOH HOH A . C 3 HOH 21 821 21 HOH HOH A . C 3 HOH 22 822 22 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-04-25 2 'Structure model' 1 1 2018-04-04 3 'Structure model' 1 2 2018-04-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Data collection' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Source and taxonomy' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' diffrn_source 2 2 'Structure model' pdbx_unobs_or_zero_occ_atoms 3 2 'Structure model' pdbx_unobs_or_zero_occ_residues 4 3 'Structure model' diffrn_source 5 3 'Structure model' entity_src_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_diffrn_source.type' 2 3 'Structure model' '_diffrn_source.pdbx_synchrotron_beamline' 3 3 'Structure model' '_diffrn_source.type' 4 3 'Structure model' '_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 11.5516 -2.4366 10.2999 0.3280 0.3040 0.2185 0.0149 0.1486 0.0067 3.3434 10.0069 5.3642 -0.0634 -1.6375 3.2098 -0.2857 -0.0468 0.3325 0.5165 0.0222 -0.4180 -1.3327 0.0220 0.0118 'X-RAY DIFFRACTION' 2 ? refined 0.5402 16.1634 23.8650 0.0701 0.0967 0.0325 -0.0077 0.0388 -0.0189 4.5874 6.1882 2.2641 -0.8670 -0.6499 -0.8606 0.0515 0.0623 -0.1138 -0.1102 0.2163 0.0372 0.2681 -0.0911 -0.0153 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 363 A 450 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 A 451 A 636 ? . . . . ? # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 REFMAC 5.5.0088 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 XDS . ? ? ? ? 'data reduction' ? ? ? 4 XSCALE . ? ? ? ? 'data scaling' ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 394 ? ? -127.02 -56.18 2 1 ALA A 441 ? ? -125.51 -138.15 3 1 ASP A 494 ? ? -151.03 33.67 4 1 ASP A 512 ? ? 61.62 83.88 5 1 TRP A 609 ? ? -93.52 35.42 6 1 ASN A 635 ? ? 88.77 -15.69 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASN 406 ? A ASN 44 2 1 Y 1 A GLU 407 ? A GLU 45 3 1 Y 1 A ALA 408 ? A ALA 46 4 1 Y 1 A ASN 409 ? A ASN 47 5 1 Y 1 A ASP 410 ? A ASP 48 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '3-amino-6-[3-(1-methyl-1H-pyrazol-4-yl)phenyl]-N-[(1R,2r,3S,5s,7s)-5-hydroxyadamantan-2-yl]pyrazine-2-carboxamide' 0K1 3 water HOH #