HEADER TRANSFERASE/TRANSFERASE INHIBITOR 24-JAN-12 4DG2 TITLE CRYSTAL STRUCTURE OF MYRISTOYLATED WT CATALYTIC SUBUNIT OF CAMP- TITLE 2 DEPENDENT PROTEIN KINASE IN COMPLEX WITH SP20 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT ALPHA; COMPND 3 CHAIN: E; COMPND 4 FRAGMENT: UNP RESIDUES 2-351; COMPND 5 SYNONYM: PKA C-ALPHA; COMPND 6 EC: 2.7.11.11; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE INHIBITOR ALPHA; COMPND 10 CHAIN: I; COMPND 11 FRAGMENT: UNP RESIDUES 6-25; COMPND 12 SYNONYM: PKI-ALPHA, CAMP-DEPENDENT PROTEIN KINASE INHIBITOR, COMPND 13 MUSCLE/BRAIN ISOFORM; COMPND 14 ENGINEERED: YES; COMPND 15 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PRKACA, PKACA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: MOUSE; SOURCE 12 ORGANISM_TAXID: 10090 KEYWDS PROTEIN KINASE, MYRISTOYLATED, PHOSPHOTRANSFERASE OF SER/THR, MG, KEYWDS 2 PKI, PKA REGULATORY SUBUNITS, PHOSPHORYLATED ON S139, T197, S338, KEYWDS 3 MYRISTOYLATED ON G1, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.C.BASTIDAS,J.M.STEICHEN,S.S.TAYLOR REVDAT 4 16-OCT-24 4DG2 1 REMARK SEQADV LINK REVDAT 3 02-JAN-13 4DG2 1 JRNL REVDAT 2 25-JUL-12 4DG2 1 REMARK REVDAT 1 06-JUN-12 4DG2 0 JRNL AUTH A.C.BASTIDAS,M.S.DEAL,J.M.STEICHEN,M.M.KESHWANI,Y.GUO, JRNL AUTH 2 S.S.TAYLOR JRNL TITL ROLE OF N-TERMINAL MYRISTYLATION IN THE STRUCTURE AND JRNL TITL 2 REGULATION OF CAMP-DEPENDENT PROTEIN KINASE. JRNL REF J.MOL.BIOL. V. 422 215 2012 JRNL REFN ISSN 0022-2836 JRNL PMID 22617327 JRNL DOI 10.1016/J.JMB.2012.05.021 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 81.8 REMARK 3 NUMBER OF REFLECTIONS : 24598 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1310 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1760 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.2140 REMARK 3 BIN FREE R VALUE SET COUNT : 74 REMARK 3 BIN FREE R VALUE : 0.2510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2987 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 308 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.39000 REMARK 3 B22 (A**2) : 0.06000 REMARK 3 B33 (A**2) : -1.44000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.226 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.168 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.102 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.063 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3083 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4162 ; 0.866 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 372 ; 4.383 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 148 ;35.823 ;23.986 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 536 ;12.802 ;15.028 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;17.499 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 442 ; 0.062 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2330 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1844 ; 0.232 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2964 ; 0.446 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1239 ; 0.598 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1196 ; 1.022 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 5 E 350 REMARK 3 ORIGIN FOR THE GROUP (A): -8.5360 5.3970 -24.0760 REMARK 3 T TENSOR REMARK 3 T11: 0.0072 T22: 0.0084 REMARK 3 T33: 0.0342 T12: -0.0003 REMARK 3 T13: 0.0120 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 0.6299 L22: 1.5369 REMARK 3 L33: 2.6666 L12: 0.2652 REMARK 3 L13: 0.0096 L23: 0.8567 REMARK 3 S TENSOR REMARK 3 S11: 0.0307 S12: -0.0459 S13: -0.0042 REMARK 3 S21: 0.0719 S22: -0.0488 S23: 0.0469 REMARK 3 S31: 0.0340 S32: 0.0127 S33: 0.0182 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : I 5 I 24 REMARK 3 ORIGIN FOR THE GROUP (A): 3.4900 -6.0210 -32.4200 REMARK 3 T TENSOR REMARK 3 T11: 0.0630 T22: 0.0488 REMARK 3 T33: 0.0591 T12: 0.0217 REMARK 3 T13: -0.0090 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 1.6749 L22: 10.4797 REMARK 3 L33: 13.5178 L12: -1.1096 REMARK 3 L13: 0.8087 L23: 9.7888 REMARK 3 S TENSOR REMARK 3 S11: -0.1103 S12: -0.2097 S13: 0.2035 REMARK 3 S21: -0.2621 S22: 0.0949 S23: -0.4301 REMARK 3 S31: -0.5304 S32: 0.0336 S33: 0.0154 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 501 E 752 REMARK 3 RESIDUE RANGE : I 101 I 130 REMARK 3 ORIGIN FOR THE GROUP (A): -7.2010 5.3810 -23.9280 REMARK 3 T TENSOR REMARK 3 T11: 0.1263 T22: 0.1483 REMARK 3 T33: 0.1596 T12: -0.0032 REMARK 3 T13: 0.0016 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.3405 L22: 0.7034 REMARK 3 L33: 1.2425 L12: 0.1191 REMARK 3 L13: -0.2437 L23: 0.5135 REMARK 3 S TENSOR REMARK 3 S11: 0.0314 S12: -0.0454 S13: -0.0063 REMARK 3 S21: 0.0369 S22: -0.0353 S23: 0.0274 REMARK 3 S31: 0.0085 S32: -0.0059 S33: 0.0038 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4DG2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000070283. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25942 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 39.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 82.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.26800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MOTHER LIQUOR: 6% MPD PROTEIN REMARK 280 SOLUTION: 50 MM BICINE, 150 MM AMMONIUM ACETATE, 10 MM DTT, 8-10 REMARK 280 MG/ML 9% MEOH, 1:1 PROTEIN:MOTHER LIQUOR, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277.15K, PH 8.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.24000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.94500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.81500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.94500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.24000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.81500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS E 8 CG CD CE NZ REMARK 470 GLU E 13 CG CD OE1 OE2 REMARK 470 GLU E 17 CG CD OE1 OE2 REMARK 470 LYS E 21 CD CE NZ REMARK 470 LYS E 83 CE NZ REMARK 470 SEP E 139 P O1P O2P O3P REMARK 470 ARG E 256 CG CD NE CZ NH1 NH2 REMARK 470 LYS E 317 CG CD CE NZ REMARK 470 PHE E 318 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU E 334 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP E 166 40.43 -147.04 REMARK 500 ASP E 184 88.02 63.45 REMARK 500 ASN E 216 -160.09 -128.26 REMARK 500 LEU E 273 49.84 -88.77 REMARK 500 LYS E 319 32.94 -99.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MYR E 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN I OF CAMP-DEPENDENT REMARK 800 PROTEIN KINASE INHIBITOR ALPHA REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DG0 RELATED DB: PDB REMARK 900 SAME PROTEIN IN COMPLEX WITH AMP-PNP AND SP20. REMARK 900 RELATED ID: 4DFX RELATED DB: PDB REMARK 900 MYR-K7C CATALYTIC SUBUNIT OF PKA IN COMPLEX WITH SP20 AND AMP-PNP. REMARK 900 RELATED ID: 4DFZ RELATED DB: PDB REMARK 900 MYR-K7C CATALYTIC SUBUNIT OF PKA IN COMPLEX WITH SP20. REMARK 900 RELATED ID: 1ATP RELATED DB: PDB REMARK 900 THE CATALYTIC SUBUNIT OF PKA IN COMPLEX WITH ATP AND IP20. REMARK 900 RELATED ID: 1CTP RELATED DB: PDB REMARK 900 MYRISTOYLATED CATALYTIC SUBUNIT OF PKA BOUND TO IP20. REMARK 900 RELATED ID: 1JBP RELATED DB: PDB REMARK 900 THE CATALYTIC SUBUNIT OF PKA IN COMPLEX WITH ADP AND SP20. DBREF 4DG2 E 1 350 UNP P05132 KAPCA_MOUSE 2 351 DBREF 4DG2 I 5 24 UNP P63248 IPKA_MOUSE 6 25 SEQADV 4DG2 ALA I 20 UNP P63248 ASN 21 ENGINEERED MUTATION SEQADV 4DG2 SER I 21 UNP P63248 ALA 22 ENGINEERED MUTATION SEQRES 1 E 350 GLY ASN ALA ALA ALA ALA LYS LYS GLY SER GLU GLN GLU SEQRES 2 E 350 SER VAL LYS GLU PHE LEU ALA LYS ALA LYS GLU ASP PHE SEQRES 3 E 350 LEU LYS LYS TRP GLU THR PRO SER GLN ASN THR ALA GLN SEQRES 4 E 350 LEU ASP GLN PHE ASP ARG ILE LYS THR LEU GLY THR GLY SEQRES 5 E 350 SER PHE GLY ARG VAL MET LEU VAL LYS HIS LYS GLU SER SEQRES 6 E 350 GLY ASN HIS TYR ALA MET LYS ILE LEU ASP LYS GLN LYS SEQRES 7 E 350 VAL VAL LYS LEU LYS GLN ILE GLU HIS THR LEU ASN GLU SEQRES 8 E 350 LYS ARG ILE LEU GLN ALA VAL ASN PHE PRO PHE LEU VAL SEQRES 9 E 350 LYS LEU GLU PHE SER PHE LYS ASP ASN SER ASN LEU TYR SEQRES 10 E 350 MET VAL MET GLU TYR VAL ALA GLY GLY GLU MET PHE SER SEQRES 11 E 350 HIS LEU ARG ARG ILE GLY ARG PHE SEP GLU PRO HIS ALA SEQRES 12 E 350 ARG PHE TYR ALA ALA GLN ILE VAL LEU THR PHE GLU TYR SEQRES 13 E 350 LEU HIS SER LEU ASP LEU ILE TYR ARG ASP LEU LYS PRO SEQRES 14 E 350 GLU ASN LEU LEU ILE ASP GLN GLN GLY TYR ILE GLN VAL SEQRES 15 E 350 THR ASP PHE GLY PHE ALA LYS ARG VAL LYS GLY ARG THR SEQRES 16 E 350 TRP TPO LEU CYS GLY THR PRO GLU TYR LEU ALA PRO GLU SEQRES 17 E 350 ILE ILE LEU SER LYS GLY TYR ASN LYS ALA VAL ASP TRP SEQRES 18 E 350 TRP ALA LEU GLY VAL LEU ILE TYR GLU MET ALA ALA GLY SEQRES 19 E 350 TYR PRO PRO PHE PHE ALA ASP GLN PRO ILE GLN ILE TYR SEQRES 20 E 350 GLU LYS ILE VAL SER GLY LYS VAL ARG PHE PRO SER HIS SEQRES 21 E 350 PHE SER SER ASP LEU LYS ASP LEU LEU ARG ASN LEU LEU SEQRES 22 E 350 GLN VAL ASP LEU THR LYS ARG PHE GLY ASN LEU LYS ASN SEQRES 23 E 350 GLY VAL ASN ASP ILE LYS ASN HIS LYS TRP PHE ALA THR SEQRES 24 E 350 THR ASP TRP ILE ALA ILE TYR GLN ARG LYS VAL GLU ALA SEQRES 25 E 350 PRO PHE ILE PRO LYS PHE LYS GLY PRO GLY ASP THR SER SEQRES 26 E 350 ASN PHE ASP ASP TYR GLU GLU GLU GLU ILE ARG VAL SEP SEQRES 27 E 350 ILE ASN GLU LYS CYS GLY LYS GLU PHE THR GLU PHE SEQRES 1 I 20 THR THR TYR ALA ASP PHE ILE ALA SER GLY ARG THR GLY SEQRES 2 I 20 ARG ARG ALA SER ILE HIS ASP MODRES 4DG2 SEP E 139 SER PHOSPHOSERINE MODRES 4DG2 TPO E 197 THR PHOSPHOTHREONINE MODRES 4DG2 SEP E 338 SER PHOSPHOSERINE HET SEP E 139 6 HET TPO E 197 11 HET SEP E 338 10 HET MYR E 401 15 HETNAM SEP PHOSPHOSERINE HETNAM TPO PHOSPHOTHREONINE HETNAM MYR MYRISTIC ACID HETSYN SEP PHOSPHONOSERINE HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 SEP 2(C3 H8 N O6 P) FORMUL 1 TPO C4 H10 N O6 P FORMUL 3 MYR C14 H28 O2 FORMUL 4 HOH *308(H2 O) HELIX 1 1 GLY E 1 LYS E 7 1 7 HELIX 2 2 GLU E 11 THR E 32 1 22 HELIX 3 3 GLN E 39 ASP E 41 5 3 HELIX 4 4 LYS E 76 LEU E 82 1 7 HELIX 5 5 GLN E 84 GLN E 96 1 13 HELIX 6 6 GLU E 127 GLY E 136 1 10 HELIX 7 7 SEP E 139 LEU E 160 1 22 HELIX 8 8 LYS E 168 GLU E 170 5 3 HELIX 9 9 THR E 201 LEU E 205 5 5 HELIX 10 10 ALA E 206 LEU E 211 1 6 HELIX 11 11 LYS E 217 GLY E 234 1 18 HELIX 12 12 GLN E 242 SER E 252 1 11 HELIX 13 13 SER E 262 LEU E 273 1 12 HELIX 14 14 VAL E 288 ASN E 293 1 6 HELIX 15 15 HIS E 294 ALA E 298 5 5 HELIX 16 16 ASP E 301 GLN E 307 1 7 HELIX 17 17 THR I 6 ALA I 12 1 7 SHEET 1 A 5 PHE E 43 THR E 51 0 SHEET 2 A 5 GLY E 55 HIS E 62 -1 O LEU E 59 N LYS E 47 SHEET 3 A 5 HIS E 68 ASP E 75 -1 O MET E 71 N MET E 58 SHEET 4 A 5 ASN E 115 GLU E 121 -1 O MET E 118 N LYS E 72 SHEET 5 A 5 LEU E 106 LYS E 111 -1 N PHE E 108 O VAL E 119 SHEET 1 B 2 LEU E 162 ILE E 163 0 SHEET 2 B 2 LYS E 189 ARG E 190 -1 O LYS E 189 N ILE E 163 SHEET 1 C 2 LEU E 172 ILE E 174 0 SHEET 2 C 2 ILE E 180 VAL E 182 -1 O GLN E 181 N LEU E 173 SHEET 1 D 2 CYS E 199 GLY E 200 0 SHEET 2 D 2 ILE I 22 HIS I 23 -1 O ILE I 22 N GLY E 200 LINK N GLY E 1 C1 MYR E 401 1555 1555 1.50 LINK C PHE E 138 N SEP E 139 1555 1555 1.33 LINK C SEP E 139 N GLU E 140 1555 1555 1.33 LINK C TRP E 196 N TPO E 197 1555 1555 1.33 LINK C TPO E 197 N LEU E 198 1555 1555 1.33 LINK C VAL E 337 N SEP E 338 1555 1555 1.33 LINK C SEP E 338 N ILE E 339 1555 1555 1.33 SITE 1 AC1 7 GLY E 1 ASN E 2 ALA E 3 ALA E 4 SITE 2 AC1 7 SER E 14 LEU E 152 ASP I 24 SITE 1 AC2 61 GLY E 1 ASN E 2 ALA E 3 GLN E 84 SITE 2 AC2 61 GLU E 86 ARG E 93 GLU E 127 PHE E 129 SITE 3 AC2 61 SER E 130 ARG E 133 ASP E 166 LYS E 168 SITE 4 AC2 61 PRO E 169 GLU E 170 PHE E 187 LYS E 189 SITE 5 AC2 61 ARG E 190 VAL E 191 LYS E 192 LEU E 198 SITE 6 AC2 61 CYS E 199 GLY E 200 PRO E 202 GLU E 203 SITE 7 AC2 61 GLU E 230 GLY E 234 TYR E 235 PRO E 236 SITE 8 AC2 61 PHE E 239 ASP E 241 ASP E 328 TYR E 330 SITE 9 AC2 61 GLU E 349 MYR E 401 HOH E 507 HOH E 543 SITE 10 AC2 61 HOH E 544 HOH E 665 HOH E 679 HOH E 680 SITE 11 AC2 61 HOH E 731 HOH I 103 HOH I 104 HOH I 106 SITE 12 AC2 61 HOH I 108 HOH I 110 HOH I 111 HOH I 112 SITE 13 AC2 61 HOH I 113 HOH I 114 HOH I 115 HOH I 117 SITE 14 AC2 61 HOH I 119 HOH I 120 HOH I 121 HOH I 122 SITE 15 AC2 61 HOH I 125 HOH I 126 HOH I 127 HOH I 130 SITE 16 AC2 61 HOH I 131 CRYST1 48.480 79.630 117.890 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020627 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012558 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008482 0.00000